Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47225 * 2 1 4 4 C 1.53005 * 109.46976 * 240.00358 * 2 1 3 5 5 C 1.52996 * 109.46976 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47301 * 60.00330 * 5 4 2 7 7 H 1.08999 * 109.47119 * 59.99648 * 6 5 4 8 8 N 1.46496 * 109.47085 * 180.02562 * 6 5 4 9 9 C 1.34777 * 119.99614 * 274.99223 * 8 6 5 10 10 O 1.21283 * 120.00391 * 0.02562 * 9 8 6 11 11 C 1.50706 * 120.00110 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.47348 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46929 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.53005 * 109.46836 * 299.99755 * 6 5 4 24 24 C 1.52996 * 109.46976 * 60.00045 * 23 6 5 25 25 H 1.08999 * 109.47321 * 59.99898 * 24 23 6 26 26 C 1.53001 * 109.47028 * 180.02562 * 24 23 6 27 27 H 1.08999 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47069 * 299.99601 * 1 2 3 29 29 H 1.09005 * 109.47036 * 59.99260 * 1 2 3 30 30 H 1.09005 * 109.46926 * 60.00315 * 4 2 1 31 31 H 1.08999 * 109.47179 * 300.00189 * 4 2 1 32 32 H 1.09004 * 109.47225 * 299.99642 * 5 4 2 33 33 H 1.09006 * 109.46918 * 179.97438 * 5 4 2 34 34 H 0.96996 * 120.00499 * 94.99801 * 8 6 5 35 35 H 1.09004 * 109.47058 * 59.99967 * 11 9 8 36 36 H 1.09006 * 109.46863 * 300.00634 * 11 9 8 37 37 H 1.09000 * 109.46986 * 59.99910 * 12 11 9 38 38 H 1.09002 * 109.46857 * 299.99776 * 12 11 9 39 39 H 1.09000 * 109.47441 * 60.00090 * 13 12 11 40 40 H 1.09002 * 109.47087 * 299.99536 * 13 12 11 41 41 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 42 42 H 1.09006 * 109.47297 * 299.99829 * 14 13 12 43 43 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 44 44 H 1.08996 * 109.46872 * 179.97438 * 23 6 5 45 45 H 1.09004 * 109.46852 * 300.00174 * 23 6 5 46 46 H 1.09002 * 109.47311 * 179.97438 * 26 24 23 47 47 H 1.09005 * 109.47071 * 299.99781 * 26 24 23 48 48 H 1.08999 * 109.47446 * 59.99616 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7206 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 1 3.7175 -2.4694 -0.0004 8 7 5.5454 -1.4406 -0.0006 9 6 6.2199 -2.3962 -0.6701 10 8 5.6141 -3.2568 -1.2729 11 6 7.7270 -2.3955 -0.6697 12 6 8.2378 -3.5764 -1.4977 13 6 9.7677 -3.5759 -1.4968 14 6 10.2785 -4.7571 -2.3243 15 6 11.7856 -4.7564 -2.3239 16 1 12.3251 -3.9899 -1.7875 17 6 12.4756 -5.7343 -3.0084 18 7 11.8186 -6.6675 -3.6620 19 14 14.3436 -5.7330 -3.0085 20 1 14.8380 -4.9302 -4.1557 21 1 14.8382 -5.1404 -1.7398 22 1 14.8395 -7.1275 -3.1299 23 6 3.5705 -0.7205 1.2488 24 6 2.0405 -0.7210 1.2491 25 1 1.6775 -1.7488 1.2493 26 6 1.5306 0.0007 2.4981 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.6766 -0.2072 -2.1393 31 1 1.6766 -1.7488 -1.2494 32 1 3.9329 0.3072 -1.2499 33 1 3.9332 -1.2349 -2.1395 34 1 6.0300 -0.7522 0.4813 35 1 8.0901 -2.4851 0.3541 36 1 8.0900 -1.4638 -1.1037 37 1 7.8746 -3.4863 -2.5215 38 1 7.8748 -4.5082 -1.0641 39 1 10.1305 -3.6662 -0.4729 40 1 10.1311 -2.6441 -1.9302 41 1 9.9159 -4.6674 -3.3483 42 1 9.9152 -5.6888 -1.8905 43 1 10.8486 -6.6680 -3.6623 44 1 3.9338 -1.2344 2.1387 45 1 3.9335 0.3074 1.2486 46 1 0.4405 0.0007 2.4982 47 1 1.8943 -0.5126 3.3883 48 1 1.8935 1.0285 2.4976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588164064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -123.706074 kcal Electronic energy + Delta-G solvation = -21860.859782 eV Core-core repulsion = 18719.087280 eV Total energy + Delta-G solvation = -3141.772502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21995 -39.72037 -36.94846 -35.89506 -34.79198 -33.22494 -32.40635 -31.01315 -28.19470 -27.17680 -26.05044 -24.32655 -22.91624 -22.29610 -21.66509 -21.41430 -20.48393 -18.87331 -17.96698 -17.16559 -16.94396 -15.93785 -15.67116 -15.59932 -15.51557 -15.27286 -15.19521 -14.87182 -14.75895 -14.05302 -14.00119 -13.67798 -13.52383 -13.00525 -12.89077 -12.70878 -12.70071 -12.67483 -12.48311 -12.35630 -12.21359 -11.93761 -11.93157 -11.87468 -11.65259 -11.52148 -11.50195 -11.24091 -11.03206 -10.81251 -10.57853 -10.55377 -10.05689 -8.70306 -6.40793 1.51917 1.62472 1.62590 1.79898 2.17381 2.57643 3.15204 3.63071 3.68874 3.76556 3.89937 3.99207 4.02430 4.04339 4.11962 4.36667 4.39919 4.47764 4.53695 4.55838 4.57656 4.69555 4.70552 4.72437 4.76060 4.84716 4.90861 4.96031 5.03669 5.06115 5.08956 5.11295 5.13851 5.18737 5.20732 5.25979 5.27087 5.40720 5.47583 5.52144 5.55381 5.56752 5.61201 5.99501 6.18208 6.55153 6.57017 7.27827 7.43419 8.69986 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.052199 B = 0.002211 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.282998 B =12660.256114 C =12920.105340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.079 0.921 4 C -0.110 4.110 5 C -0.125 4.125 6 C 0.143 3.857 7 H 0.055 0.945 8 N -0.715 5.715 9 C 0.510 3.490 10 O -0.590 6.590 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.089 4.089 14 C 0.002 3.998 15 C -0.617 4.617 16 H 0.057 0.943 17 C -0.048 4.048 18 N -0.941 5.941 19 Si 1.125 2.875 20 H -0.271 1.271 21 H -0.264 1.264 22 H -0.284 1.284 23 C -0.111 4.111 24 C -0.083 4.083 25 H 0.060 0.940 26 C -0.145 4.145 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.417 0.583 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.061 0.939 41 H -0.019 1.019 42 H -0.019 1.019 43 H 0.252 0.748 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.024 20.649 13.909 33.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 H 0.098 0.902 4 C -0.148 4.148 5 C -0.164 4.164 6 C 0.039 3.961 7 H 0.074 0.926 8 N -0.367 5.367 9 C 0.298 3.702 10 O -0.470 6.470 11 C -0.168 4.168 12 C -0.134 4.134 13 C -0.127 4.127 14 C -0.035 4.035 15 C -0.655 4.655 16 H 0.076 0.924 17 C -0.244 4.244 18 N -0.579 5.579 19 Si 0.945 3.055 20 H -0.196 1.196 21 H -0.189 1.189 22 H -0.210 1.210 23 C -0.149 4.149 24 C -0.102 4.102 25 H 0.079 0.921 26 C -0.202 4.202 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.254 0.746 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.079 0.921 41 H -0.001 1.001 42 H 0.000 1.000 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.152 19.256 12.946 31.398 hybrid contribution -1.352 0.337 0.182 1.406 sum -22.504 19.593 13.128 32.599 Atomic orbital electron populations 1.21882 0.94597 1.01771 1.02330 1.21167 0.96022 0.99610 0.93312 0.90241 1.21549 0.93845 1.00607 0.98844 1.21867 0.96697 1.00847 0.96963 1.20983 0.79228 0.99589 0.96327 0.92639 1.46003 1.07220 1.30380 1.53086 1.21168 0.91101 0.80439 0.77446 1.90690 1.71554 1.39474 1.45261 1.21665 0.90005 1.01143 1.03976 1.21243 0.95123 0.97704 0.99326 1.21341 0.93581 0.98031 0.99744 1.19248 0.95878 0.94428 0.93987 1.22568 0.92953 1.14761 1.35193 0.92426 1.27649 1.12074 0.92202 0.92504 1.70889 1.09281 1.35333 1.42357 0.82856 0.68320 0.76632 0.77656 1.19646 1.18861 1.20952 1.21818 0.96089 1.01420 0.95591 1.21096 0.93807 0.99746 0.95574 0.92139 1.21848 1.01547 1.00584 0.96207 0.93252 0.91307 0.92530 0.91237 0.93077 0.90404 0.94565 0.74572 0.86342 0.86396 0.93954 0.93923 0.92062 0.92061 1.00059 1.00031 0.93834 0.90925 0.89523 0.91755 0.92587 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.84 71.98 0.64 -0.81 16 2 C -0.08 -0.92 2.25 -10.79 -0.02 -0.94 16 3 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 4 C -0.11 -1.69 5.20 30.59 0.16 -1.53 16 5 C -0.13 -2.30 5.49 30.59 0.17 -2.13 16 6 C 0.14 2.65 2.45 44.99 0.11 2.76 16 7 H 0.06 1.39 7.58 -2.39 -0.02 1.37 16 8 N -0.71 -13.36 5.08 -442.53 -2.25 -15.61 16 9 C 0.51 14.13 7.79 87.66 0.68 14.81 16 10 O -0.59 -22.61 15.65 -3.04 -0.05 -22.66 16 11 C -0.13 -3.23 5.70 29.85 0.17 -3.06 16 12 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 13 C -0.09 -3.75 5.15 30.59 0.16 -3.59 16 14 C 0.00 0.09 4.28 29.85 0.13 0.22 16 15 C -0.62 -36.68 9.11 25.60 0.23 -36.45 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C -0.05 -2.90 5.46 84.65 0.46 -2.44 16 18 N -0.94 -61.49 13.65 21.45 0.29 -61.19 16 19 Si 1.13 51.57 29.90 68.60 2.05 53.62 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 C -0.11 -1.30 4.67 30.59 0.14 -1.16 16 24 C -0.08 -0.93 2.25 -10.79 -0.02 -0.95 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 C -0.14 -1.18 8.84 71.98 0.64 -0.55 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.53 6.43 -2.39 -0.02 0.52 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.42 4.70 8.60 -92.71 -0.80 3.90 16 35 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 38 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 39 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 41 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 42 H -0.02 -1.12 8.01 -2.38 -0.02 -1.14 16 43 H 0.25 16.90 7.22 -92.71 -0.67 16.23 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.06 0.48 6.43 -2.39 -0.02 0.46 16 47 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 48 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -77.24 374.09 4.02 -73.22 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.19 Total: 11.84 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 3.78 Total: -39.21 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -1.95 Total: -76.80 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -77.24 4.02 -73.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.489 kcal (2) G-P(sol) polarization free energy of solvation -77.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds