Wall clock time and date at job start Tue Mar 31 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47057 * 2 1 4 4 C 1.52993 * 109.47372 * 240.00304 * 2 1 3 5 5 C 1.53005 * 109.47194 * 299.99862 * 4 2 1 6 6 C 1.53001 * 109.46714 * 300.00187 * 5 4 2 7 7 H 1.09002 * 109.47224 * 299.99572 * 6 5 4 8 8 N 1.46507 * 109.47126 * 179.97438 * 6 5 4 9 9 C 1.34776 * 120.00105 * 84.99431 * 8 6 5 10 10 O 1.21282 * 119.99940 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00035 * 179.97438 * 9 8 6 12 12 C 1.52996 * 109.47188 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47131 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47184 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99933 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99912 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47017 * 89.99937 * 19 17 15 21 21 H 1.48507 * 109.47241 * 209.99826 * 19 17 15 22 22 H 1.48500 * 109.47209 * 329.99791 * 19 17 15 23 23 C 1.53006 * 109.47516 * 59.99745 * 6 5 4 24 24 C 1.52997 * 109.46931 * 300.00049 * 23 6 5 25 25 H 1.09002 * 109.46984 * 299.99669 * 24 23 6 26 26 C 1.52995 * 109.47273 * 180.02562 * 24 23 6 27 27 H 1.09000 * 109.47057 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47162 * 299.99557 * 1 2 3 29 29 H 1.09002 * 109.47281 * 60.00206 * 1 2 3 30 30 H 1.09002 * 109.47232 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47333 * 59.99522 * 4 2 1 32 32 H 1.08988 * 109.47473 * 180.02562 * 5 4 2 33 33 H 1.08994 * 109.46803 * 59.99593 * 5 4 2 34 34 H 0.96995 * 119.99791 * 265.00538 * 8 6 5 35 35 H 1.09001 * 109.46665 * 60.00498 * 11 9 8 36 36 H 1.08992 * 109.47413 * 300.00829 * 11 9 8 37 37 H 1.09001 * 109.46993 * 60.00038 * 12 11 9 38 38 H 1.09004 * 109.47298 * 300.00453 * 12 11 9 39 39 H 1.09001 * 109.46832 * 60.00325 * 13 12 11 40 40 H 1.08993 * 109.47194 * 299.99846 * 13 12 11 41 41 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 42 42 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 43 43 H 0.97007 * 120.00011 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.46624 * 59.99822 * 23 6 5 45 45 H 1.08996 * 109.46802 * 179.97438 * 23 6 5 46 46 H 1.09004 * 109.46868 * 300.00278 * 26 24 23 47 47 H 1.08995 * 109.47174 * 59.99496 * 26 24 23 48 48 H 1.08999 * 109.47594 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8849 0.0000 7 1 3.1301 -2.8849 0.0000 8 7 1.5513 -4.2660 0.0003 9 6 2.2277 -5.2204 -0.6692 10 8 3.2411 -4.9359 -1.2716 11 6 1.7252 -6.6411 -0.6684 12 6 2.6690 -7.5163 -1.4955 13 6 2.1586 -8.9586 -1.4952 14 6 3.1028 -9.8340 -2.3218 15 6 2.6004 -11.2548 -2.3210 16 1 1.6976 -11.5080 -1.7849 17 6 3.2926 -12.2312 -3.0054 18 7 2.8538 -13.4709 -3.0051 19 14 4.8536 -11.7930 -3.9332 20 1 6.0240 -11.9445 -3.0320 21 1 5.0067 -12.6988 -5.1000 22 1 4.7709 -10.3875 -4.4053 23 6 1.5300 -2.1637 1.2493 24 6 2.0400 -0.7212 1.2493 25 1 3.1300 -0.7212 1.2493 26 6 1.5305 -0.0001 2.4988 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.1300 -0.7207 -1.2494 31 1 1.6766 -0.2073 -2.1392 32 1 1.8937 -2.6776 -2.1389 33 1 0.4401 -2.1637 -1.2493 34 1 0.7409 -4.4936 0.4822 35 1 0.7258 -6.6733 -1.1022 36 1 1.6890 -7.0132 0.3554 37 1 3.6683 -7.4841 -1.0613 38 1 2.7057 -7.1444 -2.5195 39 1 1.1594 -8.9905 -1.9296 40 1 2.1217 -9.3308 -0.4714 41 1 3.1401 -9.4619 -3.3456 42 1 4.1018 -9.8020 -1.8870 43 1 3.3410 -14.1580 -3.4864 44 1 0.4401 -2.1638 1.2492 45 1 1.8930 -2.6778 2.1392 46 1 0.4405 -0.0002 2.4993 47 1 1.8942 -0.5141 3.3885 48 1 1.8934 1.0277 2.4986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:54 Heat of formation + Delta-G solvation = -91.646705 kcal Electronic energy + Delta-G solvation = -22057.394864 eV Core-core repulsion = 18917.012560 eV Total energy + Delta-G solvation = -3140.382303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46396 -38.99835 -35.22668 -34.70387 -32.70660 -32.52493 -31.07951 -29.78503 -27.84707 -26.21562 -25.60732 -22.78890 -22.27902 -21.23373 -20.24159 -19.99246 -18.75394 -16.85255 -16.60182 -16.27717 -15.87699 -15.64916 -15.40066 -14.42963 -14.25366 -14.18628 -13.82851 -13.60536 -13.25136 -13.00802 -12.62920 -12.53361 -12.38898 -12.34777 -12.20614 -12.02881 -11.75267 -11.72206 -11.40751 -11.09992 -11.04969 -10.72855 -10.69924 -10.58412 -10.51143 -10.43686 -9.90461 -9.77084 -9.62025 -9.36538 -9.12179 -9.09553 -8.47562 -5.98794 -3.96090 2.72751 3.10119 3.36871 3.43723 3.50125 4.27154 4.28772 4.40586 4.51840 4.67073 4.76458 4.86488 4.92653 5.03857 5.08092 5.18195 5.22075 5.24013 5.29369 5.30429 5.33593 5.36806 5.44277 5.54222 5.58445 5.61821 5.67256 5.76353 5.82547 5.86891 5.94461 5.97923 6.03060 6.06646 6.17894 6.19786 6.39356 6.47151 6.71543 6.85628 7.01942 7.40699 7.46204 7.53518 7.86816 8.28027 8.60305 9.06239 9.64684 11.14689 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.042603 B = 0.002411 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.074163 B =11611.830242 C =11819.473608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.145 3.855 7 H 0.085 0.915 8 N -0.735 5.735 9 C 0.513 3.487 10 O -0.537 6.537 11 C -0.140 4.140 12 C -0.106 4.106 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.264 1.264 23 C -0.123 4.123 24 C -0.083 4.083 25 H 0.072 0.928 26 C -0.149 4.149 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.961 30.417 10.173 32.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.169 4.169 6 C 0.041 3.959 7 H 0.103 0.897 8 N -0.387 5.387 9 C 0.300 3.700 10 O -0.413 6.413 11 C -0.180 4.180 12 C -0.144 4.144 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.160 4.160 24 C -0.102 4.102 25 H 0.090 0.910 26 C -0.206 4.206 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.175 30.430 9.661 32.343 hybrid contribution 0.384 -0.059 -0.268 0.472 sum -4.791 30.371 9.393 32.149 Atomic orbital electron populations 1.21997 0.95330 1.02167 1.01505 1.21150 0.96027 0.99069 0.94393 0.91207 1.21528 1.00866 0.95128 0.97528 1.21953 1.01020 0.95459 0.98510 1.20917 0.99929 0.80498 0.94589 0.89687 1.46184 1.29588 1.08449 1.54495 1.21069 0.83556 0.87684 0.77686 1.90693 1.24837 1.82990 1.42814 1.21777 1.01818 0.91050 1.03306 1.21473 0.98172 0.95146 0.99581 1.21476 0.99746 0.92234 1.00554 1.19581 0.94969 0.95557 0.95205 1.21187 1.11344 0.91146 1.31980 0.91118 1.25047 0.97599 0.94892 0.96138 1.69924 1.40089 1.01106 1.43440 0.86769 0.83924 0.78818 0.79759 1.20328 1.21472 1.18893 1.21899 1.01437 0.95439 0.97272 1.21073 1.00423 0.93920 0.94820 0.90978 1.21879 1.01463 1.00176 0.97080 0.92045 0.92544 0.92907 0.91757 0.91729 0.91422 0.91562 0.76806 0.89079 0.89077 0.91847 0.91854 0.92871 0.92896 0.96632 0.97067 0.92841 0.91086 0.91384 0.92288 0.92698 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.15 37.16 0.30 -0.56 16 2 C -0.09 -0.54 2.72 -90.62 -0.25 -0.79 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 4 C -0.11 -0.84 5.45 -26.73 -0.15 -0.99 16 5 C -0.13 -1.17 5.22 -26.73 -0.14 -1.31 16 6 C 0.15 1.33 2.45 -67.92 -0.17 1.16 16 7 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 8 N -0.74 -7.09 5.08 -53.80 -0.27 -7.36 16 9 C 0.51 6.89 7.79 -10.99 -0.09 6.81 16 10 O -0.54 -9.49 15.65 5.56 0.09 -9.40 16 11 C -0.14 -1.79 5.70 -27.89 -0.16 -1.95 16 12 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 13 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 14 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 15 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 16 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 17 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 19 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 23 C -0.12 -0.81 4.40 -26.73 -0.12 -0.93 16 24 C -0.08 -0.51 2.49 -90.62 -0.23 -0.74 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 C -0.15 -0.77 8.84 37.16 0.33 -0.44 16 27 H 0.06 0.36 4.81 -51.93 -0.25 0.11 16 28 H 0.06 0.28 6.43 -51.93 -0.33 -0.05 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.78 8.14 -51.94 -0.42 0.35 16 33 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 34 H 0.40 2.72 8.60 -40.82 -0.35 2.37 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.15 8.10 -51.93 -0.42 0.72 16 38 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 42 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.07 0.41 6.43 -51.93 -0.33 0.08 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.29 6.43 -51.93 -0.33 -0.05 16 47 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -33.58 364.77 -9.06 -42.64 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -9.02 Total: -3.38 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.46 Total: -18.08 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.50 Total: -35.18 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.58 -9.06 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.005 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds