Wall clock time and date at job start Tue Mar 31 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.78203 * 2 1 4 4 C 1.50475 * 109.62964 * 120.48591 * 2 1 3 5 5 C 1.54063 * 112.49667 * 213.85768 * 4 2 1 6 6 C 1.54066 * 112.81900 * 318.28216 * 5 4 2 7 7 C 1.50472 * 112.49807 * 318.28513 * 6 5 4 8 8 H 1.09000 * 109.78931 * 334.34586 * 7 6 5 9 9 N 1.46504 * 109.62520 * 213.85682 * 7 6 5 10 10 C 1.34779 * 119.99616 * 85.97608 * 9 7 6 11 11 O 1.21275 * 120.00054 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99529 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.46822 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46982 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46867 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47038 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00159 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00120 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00089 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 C 1.54242 * 108.51824 * 94.15122 * 7 6 5 25 25 C 1.45543 * 112.40721 * 280.01009 * 24 7 6 26 26 H 1.09003 * 109.47586 * 180.48541 * 1 2 3 27 27 H 1.09006 * 109.47015 * 300.48401 * 1 2 3 28 28 H 1.08996 * 109.47310 * 60.47783 * 1 2 3 29 29 H 1.09000 * 108.87726 * 334.63834 * 4 2 1 30 30 H 1.09004 * 108.87553 * 93.07934 * 4 2 1 31 31 H 1.08999 * 108.81313 * 79.14231 * 5 4 2 32 32 H 1.09007 * 108.81139 * 197.53371 * 5 4 2 33 33 H 1.08998 * 108.87860 * 197.50461 * 6 5 4 34 34 H 1.09006 * 108.87436 * 79.06045 * 6 5 4 35 35 H 0.96998 * 120.00153 * 265.96879 * 9 7 6 36 36 H 1.08996 * 109.47466 * 60.00133 * 12 10 9 37 37 H 1.09004 * 109.47173 * 299.99653 * 12 10 9 38 38 H 1.08996 * 109.47142 * 59.99749 * 13 12 10 39 39 H 1.09004 * 109.46812 * 299.99690 * 13 12 10 40 40 H 1.08996 * 109.47435 * 59.99869 * 14 13 12 41 41 H 1.08996 * 109.47029 * 299.99747 * 14 13 12 42 42 H 1.09003 * 109.46825 * 60.00325 * 15 14 13 43 43 H 1.08996 * 109.47396 * 299.99898 * 15 14 13 44 44 H 0.96998 * 119.99255 * 0.02562 * 19 18 16 45 45 H 1.09000 * 108.89826 * 40.76762 * 24 7 6 46 46 H 1.08999 * 108.89266 * 159.35060 * 24 7 6 47 47 H 1.09002 * 108.89399 * 182.69294 * 25 24 7 48 48 H 1.09003 * 108.89497 * 301.18236 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0355 -0.7190 1.2214 5 6 3.3468 -0.1159 1.7600 6 6 4.3396 0.2516 0.6405 7 6 4.4028 -0.7945 -0.4392 8 1 4.1146 -1.7635 -0.0317 9 7 5.7655 -0.8701 -0.9719 10 6 6.6824 -1.6522 -0.3684 11 8 6.3795 -2.2929 0.6157 12 6 8.0839 -1.7304 -0.9167 13 6 8.9167 -2.6807 -0.0538 14 6 10.3398 -2.7596 -0.6100 15 6 11.1727 -3.7094 0.2532 16 6 12.5747 -3.7867 -0.2943 17 1 12.8445 -3.2159 -1.1706 18 6 13.5126 -4.5870 0.3228 19 7 13.1840 -5.2825 1.3896 20 14 15.2505 -4.6822 -0.3554 21 1 15.3335 -5.7801 -1.3520 22 1 16.2010 -4.9481 0.7542 23 1 15.5987 -3.3943 -1.0075 24 6 3.4276 -0.3954 -1.5656 25 6 2.0480 -0.7369 -1.2520 26 1 -0.3634 -1.0276 0.0087 27 1 -0.3633 0.5214 0.8857 28 1 -0.3634 0.5064 -0.8942 29 1 1.2761 -0.6657 2.0015 30 1 2.2061 -1.7656 0.9690 31 1 3.1121 0.7827 2.3306 32 1 3.8201 -0.8396 2.4237 33 1 5.3322 0.3708 1.0746 34 1 4.0349 1.1992 0.1961 35 1 6.0077 -0.3574 -1.7589 36 1 8.5349 -0.7382 -0.9041 37 1 8.0532 -2.1027 -1.9407 38 1 8.4655 -3.6728 -0.0668 39 1 8.9474 -2.3088 0.9703 40 1 10.7907 -1.7674 -0.5968 41 1 10.3094 -3.1312 -1.6342 42 1 10.7220 -4.7018 0.2402 43 1 11.2030 -3.3374 1.2773 44 1 12.2816 -5.2327 1.7419 45 1 3.4968 0.6803 -1.7279 46 1 3.7175 -0.9094 -2.4821 47 1 1.4176 -0.4752 -2.1018 48 1 1.9802 -1.8116 -1.0824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:07 Heat of formation + Delta-G solvation = -96.361061 kcal Electronic energy + Delta-G solvation = -22024.393354 eV Core-core repulsion = 18883.806620 eV Total energy + Delta-G solvation = -3140.586733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36634 -38.81020 -35.36661 -34.85509 -32.95864 -32.79659 -31.89750 -29.49982 -27.60496 -25.54258 -24.38033 -23.44882 -22.30496 -20.99902 -20.36820 -19.98973 -19.48691 -16.90989 -16.62685 -16.48675 -15.76357 -15.36376 -14.96832 -14.65468 -14.17922 -14.08275 -13.70017 -13.53385 -13.50923 -13.29935 -12.82830 -12.75404 -12.46537 -12.29384 -12.09450 -11.81035 -11.53092 -11.13250 -11.08417 -10.92142 -10.90817 -10.79642 -10.65371 -10.62234 -10.54710 -10.40075 -10.08188 -9.83952 -9.71916 -9.47499 -9.13631 -8.44078 -8.25058 -6.28785 -3.97198 2.74185 3.12656 3.46767 3.50973 3.66654 4.19721 4.22934 4.50400 4.60117 4.69375 4.83398 4.86573 4.90860 5.00673 5.01633 5.10095 5.25272 5.28336 5.34416 5.38650 5.41066 5.48579 5.53634 5.59771 5.66701 5.70919 5.81354 5.82943 5.87412 5.90060 5.97135 6.01259 6.07327 6.11896 6.15391 6.23651 6.42263 6.49617 6.74587 6.91532 7.07261 7.47445 7.52528 7.65401 8.29102 8.31380 8.54853 8.96782 9.75536 11.12016 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.050576 B = 0.002286 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.489659 B =12242.935285 C =12501.783664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.127 4.127 7 C 0.146 3.854 8 H 0.090 0.910 9 N -0.736 5.736 10 C 0.512 3.488 11 O -0.535 6.535 12 C -0.139 4.139 13 C -0.104 4.104 14 C -0.103 4.103 15 C 0.006 3.994 16 C -0.601 4.601 17 H 0.048 0.952 18 C 0.011 3.989 19 N -0.915 5.915 20 Si 1.072 2.928 21 H -0.288 1.288 22 H -0.285 1.285 23 H -0.289 1.289 24 C -0.123 4.123 25 C -0.112 4.112 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.007 0.993 43 H 0.007 0.993 44 H 0.269 0.731 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.006 14.302 -6.378 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.166 4.166 7 C 0.041 3.959 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.299 3.701 11 O -0.411 6.411 12 C -0.179 4.179 13 C -0.142 4.142 14 C -0.141 4.141 15 C -0.031 4.031 16 C -0.640 4.640 17 H 0.066 0.934 18 C -0.192 4.192 19 N -0.552 5.552 20 Si 0.901 3.099 21 H -0.215 1.215 22 H -0.210 1.210 23 H -0.216 1.216 24 C -0.161 4.161 25 C -0.150 4.150 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.737 13.122 -5.415 28.521 hybrid contribution -1.406 1.041 -0.679 1.876 sum -26.143 14.164 -6.093 30.351 Atomic orbital electron populations 1.21886 0.95156 1.01771 1.01524 1.20938 0.95298 0.99984 0.94756 0.90873 1.21458 0.96734 1.00062 0.97278 1.21826 0.94830 1.00895 0.97596 1.21759 0.99978 0.98460 0.96379 1.20665 0.81229 1.00385 0.93574 0.89212 1.46236 1.11174 1.48630 1.32781 1.21047 0.87436 0.78052 0.83522 1.90697 1.80765 1.43766 1.25835 1.21782 0.91550 1.02895 1.01679 1.21452 0.95535 0.98447 0.98729 1.21517 0.92748 1.00284 0.99548 1.19231 0.95045 0.93924 0.94884 1.22113 0.96363 1.30382 1.15097 0.93390 1.25871 1.04853 0.93312 0.95196 1.70735 1.22573 1.40024 1.21835 0.83508 0.74989 0.75825 0.75613 1.21519 1.21030 1.21554 1.20740 0.95230 1.01914 0.98234 1.20489 0.95608 1.00836 0.98031 0.92685 0.92714 0.92812 0.92088 0.91972 0.92257 0.91760 0.91649 0.92118 0.76846 0.89193 0.89188 0.91894 0.91909 0.93329 0.93326 0.97513 0.97503 0.92012 0.91595 0.91467 0.91752 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.87 37.16 0.33 -0.49 16 2 C -0.09 -0.59 2.40 -91.23 -0.22 -0.81 16 3 H 0.07 0.48 6.98 -51.93 -0.36 0.12 16 4 C -0.12 -0.90 4.89 -27.44 -0.13 -1.03 16 5 C -0.11 -1.01 5.86 -25.62 -0.15 -1.16 16 6 C -0.13 -1.18 5.03 -27.44 -0.14 -1.32 16 7 C 0.15 1.39 2.13 -68.54 -0.15 1.24 16 8 H 0.09 1.07 6.43 -51.93 -0.33 0.74 16 9 N -0.74 -7.42 4.96 -54.40 -0.27 -7.69 16 10 C 0.51 7.19 7.68 -10.99 -0.08 7.10 16 11 O -0.53 -9.78 15.64 5.56 0.09 -9.70 16 12 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 13 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 14 C -0.10 -2.19 5.15 -26.73 -0.14 -2.33 16 15 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 16 C -0.60 -17.81 9.11 -34.44 -0.31 -18.12 16 17 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 18 C 0.01 0.33 5.46 -17.82 -0.10 0.24 16 19 N -0.92 -29.16 13.65 55.43 0.76 -28.41 16 20 Si 1.07 26.06 29.90 -169.99 -5.08 20.98 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.12 -0.84 4.77 -29.60 -0.14 -0.98 16 25 C -0.11 -0.72 4.68 -29.60 -0.14 -0.86 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.29 8.11 -51.93 -0.42 -0.13 16 28 H 0.05 0.27 8.13 -51.93 -0.42 -0.15 16 29 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 30 H 0.06 0.53 6.64 -51.93 -0.34 0.19 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 34 H 0.06 0.47 6.63 -51.93 -0.34 0.13 16 35 H 0.40 2.86 8.61 -40.82 -0.35 2.51 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 43 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 44 H 0.27 8.60 7.22 -40.82 -0.29 8.31 16 45 H 0.07 0.39 7.47 -51.93 -0.39 0.00 16 46 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 47 H 0.06 0.36 7.97 -51.93 -0.41 -0.06 16 48 H 0.06 0.45 7.47 -51.93 -0.39 0.07 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -34.13 368.23 -9.86 -43.98 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -9.13 Total: -2.20 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -1.77 Total: -22.52 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.49 Total: -36.10 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.13 -9.86 -43.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.381 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds