Wall clock time and date at job start Tue Mar 31 2020 05:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.78718 * 2 1 4 4 C 1.54241 * 109.63304 * 239.51679 * 2 1 3 5 5 C 1.45539 * 112.41321 * 160.29713 * 4 2 1 6 6 C 1.54242 * 112.40461 * 61.93156 * 5 4 2 7 7 C 1.50470 * 108.52569 * 280.02109 * 6 5 4 8 8 H 1.08994 * 108.80178 * 333.42580 * 7 6 5 9 9 N 1.46504 * 108.87228 * 214.92169 * 7 6 5 10 10 C 1.34779 * 119.99616 * 82.02836 * 9 7 6 11 11 O 1.21275 * 120.00054 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99529 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.46822 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46982 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46867 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47038 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00159 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00120 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00089 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 C 1.54069 * 112.49583 * 94.14821 * 7 6 5 25 25 C 1.50464 * 109.63276 * 120.48754 * 2 1 3 26 26 H 1.09003 * 109.46927 * 299.51038 * 1 2 3 27 27 H 1.08999 * 109.47325 * 59.51077 * 1 2 3 28 28 H 1.08997 * 109.47034 * 179.51190 * 1 2 3 29 29 H 1.08999 * 108.88887 * 281.05260 * 4 2 1 30 30 H 1.09003 * 108.89260 * 39.53675 * 4 2 1 31 31 H 1.08995 * 108.89575 * 182.69327 * 5 4 2 32 32 H 1.09004 * 108.88960 * 301.28123 * 5 4 2 33 33 H 1.08996 * 109.62822 * 160.30336 * 6 5 4 34 34 H 1.08999 * 109.62272 * 39.73140 * 6 5 4 35 35 H 0.96998 * 120.00153 * 262.02107 * 9 7 6 36 36 H 1.08996 * 109.47466 * 60.00133 * 12 10 9 37 37 H 1.09004 * 109.47173 * 299.99653 * 12 10 9 38 38 H 1.08996 * 109.47142 * 59.99749 * 13 12 10 39 39 H 1.09004 * 109.46812 * 299.99690 * 13 12 10 40 40 H 1.08996 * 109.47435 * 59.99869 * 14 13 12 41 41 H 1.08996 * 109.47029 * 299.99747 * 14 13 12 42 42 H 1.09003 * 109.46825 * 60.00325 * 15 14 13 43 43 H 1.08996 * 109.47396 * 299.99898 * 15 14 13 44 44 H 0.96998 * 119.99255 * 0.02562 * 19 18 16 45 45 H 1.09008 * 108.81414 * 79.14153 * 24 7 6 46 46 H 1.08997 * 108.81070 * 197.41606 * 24 7 6 47 47 H 1.08998 * 108.88016 * 93.08241 * 25 2 1 48 48 H 1.09008 * 108.79817 * 334.58801 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0483 -0.7370 -1.2519 5 6 3.4278 -0.3953 -1.5657 6 6 4.4030 -0.7941 -0.4392 7 6 4.3396 0.2519 0.6406 8 1 4.0339 1.1986 0.1952 9 7 5.6738 0.4121 1.2241 10 6 6.5875 1.1918 0.6127 11 8 6.3052 1.7604 -0.4207 12 6 7.9597 1.3571 1.2132 13 6 8.7947 2.2858 0.3293 14 6 10.1881 2.4531 0.9386 15 6 11.0233 3.3813 0.0544 16 6 12.3960 3.5456 0.6542 17 1 12.6475 3.0389 1.5743 18 6 13.3306 4.3434 0.0289 19 7 13.0243 4.9607 -1.0912 20 14 15.0323 4.5465 0.7721 21 1 15.0315 5.7042 1.7021 22 1 16.0206 4.7824 -0.3110 23 1 15.3979 3.3143 1.5159 24 6 3.3469 -0.1158 1.7600 25 6 2.0356 -0.7190 1.2212 26 1 -0.3633 0.5062 0.8944 27 1 -0.3634 0.5214 -0.8855 28 1 -0.3633 -1.0276 -0.0088 29 1 1.9806 -1.8115 -1.0821 30 1 1.4177 -0.4754 -2.1017 31 1 3.7186 -0.9080 -2.4825 32 1 3.4971 0.6807 -1.7262 33 1 5.4168 -0.8504 -0.8355 34 1 4.1129 -1.7615 -0.0293 35 1 5.8996 -0.0429 2.0505 36 1 8.4465 0.3842 1.2804 37 1 7.8705 1.7883 2.2103 38 1 8.3077 3.2586 0.2625 39 1 8.8840 1.8549 -0.6680 40 1 10.6749 1.4801 1.0050 41 1 10.0992 2.8837 1.9360 42 1 10.5367 4.3544 -0.0123 43 1 11.1122 2.9503 -0.9428 44 1 12.1407 4.8549 -1.4772 45 1 3.8192 -0.8388 2.4252 46 1 3.1121 0.7827 2.3307 47 1 2.2063 -1.7655 0.9690 48 1 1.2757 -0.6641 2.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:10 Heat of formation + Delta-G solvation = -95.700910 kcal Electronic energy + Delta-G solvation = -22035.023894 eV Core-core repulsion = 18894.465787 eV Total energy + Delta-G solvation = -3140.558107 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.36296 -38.81187 -35.40847 -34.86032 -33.11643 -32.80522 -31.63540 -29.46272 -27.62457 -25.53665 -24.56168 -23.36131 -22.26116 -20.89215 -20.35368 -20.06080 -19.61004 -16.87700 -16.60385 -16.37945 -15.80898 -15.28098 -15.06923 -14.77263 -14.09037 -14.00121 -13.71084 -13.58322 -13.52501 -13.16474 -12.83774 -12.79999 -12.48860 -12.29973 -12.18238 -11.78463 -11.46797 -11.13056 -11.06236 -10.92764 -10.90756 -10.74576 -10.66802 -10.61452 -10.54652 -10.48670 -10.08156 -9.82908 -9.71830 -9.46711 -9.13185 -8.44024 -8.25030 -6.28762 -3.97169 2.74775 3.12698 3.46790 3.50998 3.66679 4.18356 4.29681 4.52375 4.60165 4.65778 4.79898 4.81081 4.89024 4.99134 5.09895 5.12703 5.23538 5.29169 5.34727 5.37178 5.38404 5.48575 5.48745 5.61882 5.66314 5.75195 5.78079 5.83802 5.86499 5.93020 5.95302 6.07012 6.07398 6.12238 6.18374 6.23722 6.42665 6.49734 6.74713 6.91648 7.07329 7.47173 7.52581 7.65462 8.29393 8.31513 8.54891 8.96824 9.75573 11.12056 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.048223 B = 0.002297 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.495851 B =12187.821596 C =12446.842075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.125 4.125 7 C 0.145 3.855 8 H 0.084 0.916 9 N -0.738 5.738 10 C 0.512 3.488 11 O -0.535 6.535 12 C -0.139 4.139 13 C -0.103 4.103 14 C -0.103 4.103 15 C 0.006 3.994 16 C -0.601 4.601 17 H 0.048 0.952 18 C 0.011 3.989 19 N -0.915 5.915 20 Si 1.072 2.928 21 H -0.288 1.288 22 H -0.285 1.285 23 H -0.289 1.289 24 C -0.122 4.122 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.397 0.603 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.007 0.993 43 H 0.007 0.993 44 H 0.269 0.731 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.719 -14.948 5.963 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.163 4.163 7 C 0.041 3.959 8 H 0.102 0.898 9 N -0.391 5.391 10 C 0.299 3.701 11 O -0.410 6.410 12 C -0.179 4.179 13 C -0.142 4.142 14 C -0.141 4.141 15 C -0.031 4.031 16 C -0.639 4.639 17 H 0.066 0.934 18 C -0.192 4.192 19 N -0.552 5.552 20 Si 0.901 3.099 21 H -0.215 1.215 22 H -0.210 1.210 23 H -0.216 1.216 24 C -0.160 4.160 25 C -0.147 4.147 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.454 -13.782 4.986 28.510 hybrid contribution -1.389 -1.035 0.709 1.872 sum -25.844 -14.817 5.695 30.329 Atomic orbital electron populations 1.21879 0.95081 1.01641 1.01670 1.20968 0.95412 1.00204 0.94815 0.90798 1.20567 0.96561 1.00151 0.97631 1.20406 0.94613 1.02288 0.98263 1.21756 1.00192 0.98570 0.95789 1.20826 0.81807 0.99908 0.93369 0.89809 1.46365 1.13422 1.50882 1.28415 1.21038 0.86914 0.77578 0.84569 1.90696 1.80077 1.46783 1.23490 1.21782 0.92052 1.02770 1.01314 1.21451 0.95670 0.98585 0.98447 1.21517 0.93052 1.00158 0.99370 1.19230 0.94991 0.93974 0.94885 1.22113 0.98380 1.32438 1.11019 0.93392 1.25871 1.04377 0.93457 0.95527 1.70735 1.23909 1.41782 1.18750 0.83509 0.75091 0.75898 0.75439 1.21517 1.21031 1.21552 1.22146 0.95245 1.01315 0.97343 1.21359 0.95880 0.99907 0.97517 0.92727 0.92688 0.92762 0.92280 0.92217 0.92085 0.91618 0.91271 0.91670 0.76946 0.89209 0.89217 0.91903 0.91905 0.93332 0.93333 0.97517 0.97503 0.92009 0.91650 0.91621 0.91819 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.87 37.16 0.33 -0.51 16 2 C -0.10 -0.65 2.40 -91.24 -0.22 -0.87 16 3 H 0.07 0.59 6.97 -51.93 -0.36 0.23 16 4 C -0.11 -0.80 4.68 -29.60 -0.14 -0.94 16 5 C -0.12 -1.06 5.26 -29.60 -0.16 -1.22 16 6 C -0.12 -1.17 5.25 -27.34 -0.14 -1.32 16 7 C 0.15 1.38 1.95 -68.63 -0.13 1.24 16 8 H 0.08 1.00 6.07 -51.93 -0.32 0.68 16 9 N -0.74 -7.46 4.97 -54.50 -0.27 -7.73 16 10 C 0.51 7.18 7.49 -10.99 -0.08 7.10 16 11 O -0.53 -9.74 15.64 5.56 0.09 -9.65 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 14 C -0.10 -2.19 5.15 -26.73 -0.14 -2.33 16 15 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 16 C -0.60 -17.81 9.11 -34.44 -0.31 -18.13 16 17 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 18 C 0.01 0.33 5.46 -17.82 -0.10 0.24 16 19 N -0.92 -29.18 13.65 55.43 0.76 -28.42 16 20 Si 1.07 26.07 29.90 -169.99 -5.08 20.99 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.12 -0.83 5.39 -25.62 -0.14 -0.97 16 25 C -0.11 -0.66 4.89 -27.44 -0.13 -0.80 16 26 H 0.05 0.30 8.09 -51.93 -0.42 -0.12 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.39 7.47 -51.93 -0.39 0.01 16 30 H 0.06 0.41 7.97 -51.93 -0.41 0.00 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.70 7.46 -51.93 -0.39 0.31 16 33 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 34 H 0.06 0.52 6.98 -51.93 -0.36 0.16 16 35 H 0.40 2.87 8.43 -40.82 -0.34 2.53 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 43 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 44 H 0.27 8.60 7.22 -40.82 -0.29 8.31 16 45 H 0.06 0.37 7.91 -51.92 -0.41 -0.04 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.38 6.63 -51.93 -0.34 0.03 16 48 H 0.06 0.35 7.67 -51.92 -0.40 -0.05 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -34.09 367.55 -9.83 -43.92 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -9.10 Total: -2.12 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -1.76 Total: -22.52 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.49 Total: -36.15 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.09 -9.83 -43.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.778 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds