Wall clock time and date at job start Tue Mar 31 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 108.77102 * 2 1 4 4 C 1.50469 * 108.87889 * 118.51509 * 2 1 3 5 5 C 1.54248 * 108.51626 * 214.93197 * 4 2 1 6 6 C 1.45386 * 112.55395 * 280.12581 * 5 4 2 7 7 C 1.54234 * 112.49369 * 61.62885 * 6 5 4 8 8 H 1.09001 * 109.63045 * 40.12701 * 7 6 5 9 9 N 1.46506 * 109.62995 * 160.50843 * 7 6 5 10 10 C 1.34777 * 120.00033 * 274.61589 * 9 7 6 11 11 O 1.21287 * 119.99681 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99885 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.46973 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46995 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.46922 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47211 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99691 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00462 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00606 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99683 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47162 * 89.99881 * 20 18 16 22 22 H 1.48502 * 109.46889 * 209.99845 * 20 18 16 23 23 H 1.48501 * 109.46884 * 329.99472 * 20 18 16 24 24 C 1.50474 * 108.68530 * 280.31566 * 7 6 5 25 25 C 1.54063 * 112.49754 * 94.05244 * 24 7 6 26 26 H 1.08998 * 109.47191 * 178.50916 * 1 2 3 27 27 H 1.08998 * 109.46954 * 298.51426 * 1 2 3 28 28 H 1.09002 * 109.47188 * 58.50889 * 1 2 3 29 29 H 1.09006 * 109.62487 * 334.63289 * 4 2 1 30 30 H 1.08995 * 109.63180 * 95.21802 * 4 2 1 31 31 H 1.08996 * 108.89457 * 40.76473 * 5 4 2 32 32 H 1.09000 * 108.89059 * 159.35000 * 5 4 2 33 33 H 1.09000 * 108.68962 * 300.95835 * 6 5 4 34 34 H 1.09002 * 109.01107 * 182.52032 * 6 5 4 35 35 H 0.97000 * 119.99812 * 94.60750 * 9 7 6 36 36 H 1.09001 * 109.47165 * 299.99943 * 12 10 9 37 37 H 1.08997 * 109.47334 * 59.99905 * 12 10 9 38 38 H 1.09001 * 109.47368 * 300.00112 * 13 12 10 39 39 H 1.09007 * 109.47050 * 60.00086 * 13 12 10 40 40 H 1.08993 * 109.47412 * 300.00059 * 14 13 12 41 41 H 1.08998 * 109.47225 * 60.00804 * 14 13 12 42 42 H 1.09006 * 109.46765 * 299.99716 * 15 14 13 43 43 H 1.08994 * 109.47475 * 60.00381 * 15 14 13 44 44 H 0.96995 * 120.00005 * 180.02562 * 19 18 16 45 45 H 1.08997 * 108.87834 * 214.82925 * 24 7 6 46 46 H 1.09001 * 108.87647 * 333.27652 * 24 7 6 47 47 H 1.09001 * 108.81310 * 79.14219 * 25 24 7 48 48 H 1.08998 * 108.81666 * 197.53234 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8808 1.0321 0.0000 4 6 2.0169 -0.6797 1.2510 5 6 3.3100 0.0202 1.7172 6 6 4.4793 -0.4137 0.9701 7 6 4.3713 -0.0916 -0.5343 8 1 3.9249 0.8939 -0.6667 9 7 5.7056 -0.1126 -1.1391 10 6 6.4806 0.9893 -1.1002 11 8 6.0732 1.9985 -0.5648 12 6 7.8532 0.9675 -1.7218 13 6 8.5167 2.3342 -1.5411 14 6 9.9105 2.3119 -2.1716 15 6 10.5742 3.6785 -1.9903 16 6 11.9469 3.6567 -2.6120 17 1 12.3098 2.7579 -3.0883 18 6 12.7395 4.7841 -2.5726 19 7 13.9376 4.7650 -3.1146 20 14 12.1122 6.3385 -1.7481 21 1 12.4910 6.3247 -0.3123 22 1 12.7134 7.5257 -2.4073 23 1 10.6334 6.4009 -1.8694 24 6 3.5032 -1.1318 -1.1889 25 6 2.0284 -0.6958 -1.2811 26 1 -0.3633 -1.0273 -0.0267 27 1 -0.3633 0.4906 0.9030 28 1 -0.3634 0.5368 -0.8763 29 1 1.2575 -0.6019 2.0292 30 1 2.2237 -1.7290 1.0409 31 1 3.1938 1.0966 1.5912 32 1 3.4671 -0.1962 2.7739 33 1 4.5926 -1.4908 1.0933 34 1 5.3626 0.0807 1.3745 35 1 6.0312 -0.9197 -1.5675 36 1 8.4593 0.2020 -1.2373 37 1 7.7670 0.7436 -2.7851 38 1 7.9104 3.0994 -2.0259 39 1 8.6028 2.5586 -0.4778 40 1 10.5165 1.5468 -1.6865 41 1 9.8247 2.0875 -3.2348 42 1 9.9682 4.4439 -2.4753 43 1 10.6601 3.9026 -0.9271 44 1 14.4953 5.5581 -3.0866 45 1 3.8782 -1.3220 -2.1946 46 1 3.5627 -2.0547 -0.6120 47 1 1.9166 -0.0092 -2.1202 48 1 1.4123 -1.5762 -1.4634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:13 Heat of formation + Delta-G solvation = -88.761100 kcal Electronic energy + Delta-G solvation = -22049.956767 eV Core-core repulsion = 18909.699593 eV Total energy + Delta-G solvation = -3140.257174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36544 -38.79672 -35.37047 -34.82862 -33.29448 -32.57219 -31.67571 -29.99438 -27.52379 -26.06467 -24.85173 -23.25461 -22.05445 -20.91416 -20.20531 -19.99602 -19.48579 -16.82902 -16.58578 -16.40487 -15.73270 -15.57191 -15.21813 -14.67717 -14.32494 -14.09323 -13.84181 -13.54811 -13.37663 -13.24263 -12.95788 -12.62493 -12.41446 -12.16944 -12.08750 -11.77452 -11.72154 -11.49564 -11.30150 -11.08050 -10.94959 -10.71770 -10.70760 -10.57559 -10.55171 -10.50695 -9.91571 -9.77266 -9.62229 -9.37142 -9.12060 -9.09544 -8.47561 -5.98753 -3.96095 2.72751 3.12534 3.36871 3.43725 3.50113 4.20438 4.29309 4.48464 4.51830 4.67004 4.70941 4.83693 4.92599 4.95734 5.03833 5.13490 5.25067 5.28216 5.32644 5.35160 5.37063 5.39205 5.49599 5.59158 5.67287 5.72386 5.74872 5.82809 5.84283 5.90852 5.94109 6.05339 6.06535 6.10430 6.14009 6.19511 6.40690 6.48310 6.71575 6.85665 7.01954 7.40708 7.46506 7.53522 7.86812 8.28445 8.60309 9.06238 9.64710 11.14727 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.002467 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.372432 B =11349.342065 C =11598.612709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.125 4.125 7 C 0.146 3.854 8 H 0.089 0.911 9 N -0.735 5.735 10 C 0.512 3.488 11 O -0.537 6.537 12 C -0.140 4.140 13 C -0.106 4.106 14 C -0.103 4.103 15 C -0.016 4.016 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.264 1.264 24 C -0.127 4.127 25 C -0.107 4.107 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.316 -15.898 6.477 32.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.164 4.164 7 C 0.042 3.958 8 H 0.107 0.893 9 N -0.387 5.387 10 C 0.300 3.700 11 O -0.413 6.413 12 C -0.180 4.180 13 C -0.144 4.144 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 C -0.165 4.165 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.452 -15.038 6.827 32.037 hybrid contribution 0.033 0.394 0.183 0.435 sum -27.419 -14.645 7.010 31.866 Atomic orbital electron populations 1.21951 0.95333 1.01605 1.01684 1.21014 0.95533 1.00376 0.94602 0.91097 1.21456 0.96981 0.99831 0.96798 1.20397 0.94536 1.00964 0.99603 1.20807 0.99132 1.01293 0.95171 1.20639 0.82537 1.00638 0.92003 0.89263 1.46269 1.17136 1.15208 1.60105 1.21068 0.87341 0.82595 0.79039 1.90694 1.74156 1.32200 1.44209 1.21779 0.92360 1.01912 1.01914 1.21472 0.96997 0.93942 1.01952 1.21476 0.93071 0.99987 0.99484 1.19581 0.96301 0.93033 0.96397 1.21188 0.98415 0.99581 1.36469 0.91120 1.25047 0.94715 0.98811 0.95103 1.69921 1.09409 1.29537 1.45695 0.86770 0.79812 0.82941 0.79756 1.20330 1.21472 1.18890 1.21644 0.95098 0.98617 1.01138 1.21896 0.94645 1.00448 0.97490 0.92797 0.92650 0.92856 0.91770 0.91672 0.91789 0.92097 0.92262 0.91652 0.76795 0.89075 0.89083 0.91840 0.91862 0.92900 0.92866 0.96629 0.97065 0.92841 0.91346 0.91422 0.92043 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.84 37.16 0.33 -0.54 16 2 C -0.10 -0.65 2.20 -91.33 -0.20 -0.85 16 3 H 0.07 0.58 6.64 -51.92 -0.34 0.23 16 4 C -0.11 -0.74 5.13 -27.34 -0.14 -0.88 16 5 C -0.12 -0.94 5.25 -29.66 -0.16 -1.10 16 6 C -0.13 -1.12 4.89 -29.67 -0.15 -1.26 16 7 C 0.15 1.34 2.11 -68.54 -0.14 1.19 16 8 H 0.09 1.03 6.44 -51.93 -0.33 0.70 16 9 N -0.73 -7.09 4.98 -54.40 -0.27 -7.36 16 10 C 0.51 6.87 7.72 -10.99 -0.08 6.79 16 11 O -0.54 -9.44 15.65 5.55 0.09 -9.35 16 12 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 13 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 14 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 15 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 16 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 17 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 20 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 24 C -0.13 -0.84 4.93 -27.44 -0.14 -0.97 16 25 C -0.11 -0.68 5.23 -25.62 -0.13 -0.81 16 26 H 0.05 0.28 8.11 -51.93 -0.42 -0.14 16 27 H 0.05 0.31 8.01 -51.93 -0.42 -0.10 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.39 7.63 -51.93 -0.40 -0.01 16 30 H 0.06 0.40 6.98 -51.93 -0.36 0.04 16 31 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.46 7.49 -51.93 -0.39 0.07 16 34 H 0.06 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.40 2.71 8.51 -40.82 -0.35 2.36 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 39 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 43 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.07 0.42 7.85 -51.93 -0.41 0.01 16 46 H 0.07 0.39 6.65 -51.93 -0.35 0.05 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.35 7.95 -51.93 -0.41 -0.06 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -33.57 365.66 -9.48 -43.04 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -9.13 Total: -3.20 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -1.77 Total: -18.72 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.50 Total: -35.17 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.57 -9.48 -43.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.716 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds