Wall clock time and date at job start Tue Mar 31 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 108.85435 * 2 1 4 4 C 1.53998 * 108.82960 * 241.56975 * 2 1 3 5 5 C 1.54071 * 112.85406 * 197.66120 * 4 2 1 6 6 C 1.50470 * 112.41687 * 318.13879 * 5 4 2 7 7 C 1.54231 * 108.51737 * 94.20623 * 6 5 4 8 8 H 1.08996 * 108.89861 * 40.65174 * 7 6 5 9 9 N 1.46498 * 108.89883 * 159.24579 * 7 6 5 10 10 C 1.34781 * 120.00025 * 274.99881 * 9 7 6 11 11 O 1.21285 * 119.99553 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00233 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.47180 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47060 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47230 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47418 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99809 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00030 * 180.02562 * 16 15 14 19 19 N 1.31505 * 119.99738 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99757 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47190 * 89.99947 * 20 18 16 22 22 H 1.48500 * 109.47034 * 209.99502 * 20 18 16 23 23 H 1.48495 * 109.47269 * 329.99693 * 20 18 16 24 24 C 1.45547 * 112.40761 * 279.99534 * 7 6 5 25 25 C 1.50478 * 108.87686 * 118.55820 * 2 1 3 26 26 H 1.09008 * 109.47036 * 301.44127 * 1 2 3 27 27 H 1.09001 * 109.47199 * 61.44069 * 1 2 3 28 28 H 1.09002 * 109.47282 * 181.44768 * 1 2 3 29 29 H 1.09001 * 108.87577 * 76.73727 * 4 2 1 30 30 H 1.09001 * 108.72188 * 318.47770 * 4 2 1 31 31 H 1.09002 * 108.87929 * 197.40739 * 5 4 2 32 32 H 1.08999 * 108.87602 * 78.86520 * 5 4 2 33 33 H 1.09009 * 109.62845 * 213.91245 * 6 5 4 34 34 H 1.08999 * 109.63047 * 334.29315 * 6 5 4 35 35 H 0.96999 * 120.00282 * 94.99172 * 9 7 6 36 36 H 1.09004 * 109.47457 * 300.00252 * 12 10 9 37 37 H 1.09002 * 109.47294 * 60.00027 * 12 10 9 38 38 H 1.08994 * 109.46904 * 300.00380 * 13 12 10 39 39 H 1.09002 * 109.46643 * 60.00204 * 13 12 10 40 40 H 1.09004 * 109.47382 * 300.00090 * 14 13 12 41 41 H 1.09002 * 109.47488 * 59.99939 * 14 13 12 42 42 H 1.09004 * 109.46816 * 300.00197 * 15 14 13 43 43 H 1.09002 * 109.47131 * 59.99480 * 15 14 13 44 44 H 0.97005 * 119.99808 * 180.02562 * 19 18 16 45 45 H 1.09005 * 108.89614 * 182.68690 * 24 7 6 46 46 H 1.08996 * 108.90005 * 301.28165 * 24 7 6 47 47 H 1.09000 * 109.62360 * 95.11022 * 25 2 1 48 48 H 1.08995 * 109.78446 * 334.63102 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8823 1.0315 0.0000 4 6 2.0270 -0.6939 -1.2818 5 6 3.5006 -1.1345 -1.1908 6 6 4.3707 -0.0957 -0.5366 7 6 4.4789 -0.4235 0.9666 8 1 4.5871 -1.5015 1.0860 9 7 5.6685 0.2353 1.5116 10 6 6.8723 -0.3637 1.4195 11 8 6.9706 -1.4484 0.8860 12 6 8.0961 0.3143 1.9795 13 6 9.3219 -0.5710 1.7452 14 6 10.5642 0.1170 2.3144 15 6 11.7900 -0.7680 2.0795 16 6 13.0136 -0.0906 2.6407 17 1 12.9258 0.8748 3.1168 18 6 14.2453 -0.7028 2.5453 19 7 14.3522 -1.8781 1.9651 20 14 15.7622 0.1372 3.2402 21 1 15.9473 -0.2682 4.6567 22 1 16.9548 -0.2627 2.4510 23 1 15.5902 1.6103 3.1654 24 6 3.3114 0.0169 1.7159 25 6 2.0169 -0.6807 1.2506 26 1 -0.3633 0.5361 0.8768 27 1 -0.3634 0.4913 -0.9026 28 1 -0.3634 -1.0273 0.0260 29 1 1.9169 -0.0064 -2.1204 30 1 1.4084 -1.5722 -1.4666 31 1 3.8745 -1.3250 -2.1968 32 1 3.5578 -2.0571 -0.6132 33 1 5.3631 -0.1126 -0.9874 34 1 3.9256 0.8905 -0.6683 35 1 5.5898 1.1028 1.9385 36 1 8.2404 1.2731 1.4815 37 1 7.9640 0.4768 3.0492 38 1 9.1779 -1.5300 2.2430 39 1 9.4538 -0.7331 0.6754 40 1 10.7083 1.0762 1.8170 41 1 10.4320 0.2788 3.3842 42 1 11.6460 -1.7273 2.5766 43 1 11.9220 -0.9294 1.0097 44 1 15.2187 -2.3090 1.8983 45 1 3.4683 -0.1989 2.7728 46 1 3.1960 1.0933 1.5891 47 1 2.2218 -1.7303 1.0400 48 1 1.2593 -0.6049 2.0306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:15 Heat of formation + Delta-G solvation = -91.118340 kcal Electronic energy + Delta-G solvation = -21917.967787 eV Core-core repulsion = 18777.608395 eV Total energy + Delta-G solvation = -3140.359392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39374 -38.74262 -35.41091 -34.73230 -32.91104 -32.59597 -31.75293 -29.59826 -27.45697 -25.83240 -24.83489 -23.21111 -22.26709 -21.04777 -20.13031 -19.89591 -19.35344 -16.92552 -16.58202 -16.09877 -15.69397 -15.32149 -15.17149 -14.65846 -14.41298 -14.16757 -13.67955 -13.48009 -13.40075 -13.04993 -12.93661 -12.57054 -12.25678 -12.12642 -11.78455 -11.68579 -11.60444 -11.46459 -11.27929 -10.95957 -10.91991 -10.71230 -10.60370 -10.51712 -10.49886 -10.47565 -10.37328 -9.70415 -9.57824 -9.18004 -9.07809 -8.94856 -8.28257 -5.92990 -3.95352 2.80145 3.15539 3.35473 3.41382 3.44700 4.24783 4.37873 4.45162 4.50844 4.71392 4.75602 4.89765 4.93453 4.98681 5.10768 5.16387 5.26046 5.29994 5.38194 5.41020 5.41753 5.43516 5.54221 5.60861 5.67332 5.71856 5.80551 5.83862 5.89016 5.94812 5.96224 6.05014 6.11145 6.18275 6.20020 6.35190 6.46636 6.59627 6.88175 7.06288 7.23584 7.52393 7.76830 7.93227 8.08745 8.35385 8.50616 9.12388 9.68034 11.18325 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.055636 B = 0.002220 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.152408 B =12610.791111 C =12845.389357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.124 4.124 7 C 0.147 3.853 8 H 0.084 0.916 9 N -0.739 5.739 10 C 0.512 3.488 11 O -0.535 6.535 12 C -0.140 4.140 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.128 4.128 25 C -0.107 4.107 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.689 6.097 -3.046 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.162 4.162 7 C 0.042 3.958 8 H 0.102 0.898 9 N -0.391 5.391 10 C 0.299 3.701 11 O -0.410 6.410 12 C -0.180 4.180 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.166 4.166 25 C -0.145 4.145 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.474 5.160 -3.485 30.124 hybrid contribution 0.855 0.876 0.551 1.343 sum -28.618 6.036 -2.935 29.395 Atomic orbital electron populations 1.21957 0.95420 1.01734 1.01536 1.20962 0.95366 1.00071 0.94707 0.91331 1.21988 0.95825 1.00170 0.96971 1.21259 0.94207 0.99017 1.01056 1.21704 1.00356 0.99258 0.94931 1.19876 0.84340 0.98844 0.92713 0.89790 1.46354 1.07498 1.23515 1.61745 1.21083 0.84612 0.85766 0.78632 1.90699 1.85908 1.21122 1.43319 1.21800 0.93236 1.00813 1.02101 1.21439 0.92362 0.98223 1.02049 1.21649 0.94859 0.99238 0.99050 1.19099 0.90821 0.94747 0.97096 1.21288 0.92577 1.04529 1.37409 0.92767 1.25050 0.99074 0.95003 0.95519 1.69975 1.24374 1.15195 1.43906 0.86606 0.82701 0.79779 0.78966 1.20729 1.21268 1.19938 1.20765 0.94595 1.01014 1.00248 1.21325 0.96014 1.00200 0.97006 0.92730 0.92896 0.92713 0.92378 0.92226 0.92022 0.91818 0.91353 0.91683 0.76940 0.89260 0.89269 0.91861 0.91858 0.93520 0.93515 0.96605 0.96592 0.93065 0.91449 0.91600 0.91277 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.78 37.16 0.33 -0.46 16 2 C -0.09 -0.56 2.21 -91.36 -0.20 -0.76 16 3 H 0.07 0.43 6.64 -51.93 -0.34 0.08 16 4 C -0.11 -0.75 5.22 -25.65 -0.13 -0.89 16 5 C -0.12 -0.99 5.32 -27.44 -0.15 -1.14 16 6 C -0.12 -1.15 5.18 -27.35 -0.14 -1.30 16 7 C 0.15 1.39 1.97 -70.80 -0.14 1.25 16 8 H 0.08 1.00 6.82 -51.93 -0.35 0.65 16 9 N -0.74 -7.47 4.99 -56.63 -0.28 -7.76 16 10 C 0.51 7.21 7.68 -10.99 -0.08 7.13 16 11 O -0.53 -9.84 15.60 5.55 0.09 -9.75 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 14 C -0.11 -2.32 5.15 -26.74 -0.14 -2.45 16 15 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 16 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 20 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.13 -0.89 4.62 -29.60 -0.14 -1.03 16 25 C -0.11 -0.68 5.13 -27.34 -0.14 -0.82 16 26 H 0.05 0.27 8.08 -51.92 -0.42 -0.15 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 7.97 -51.93 -0.41 -0.03 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.58 6.62 -51.93 -0.34 0.24 16 33 H 0.07 0.80 8.01 -51.92 -0.42 0.39 16 34 H 0.06 0.53 6.99 -51.93 -0.36 0.17 16 35 H 0.40 2.88 8.58 -40.82 -0.35 2.53 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.40 7.47 -51.93 -0.39 0.01 16 47 H 0.07 0.49 6.97 -51.93 -0.36 0.12 16 48 H 0.07 0.38 7.68 -51.93 -0.40 -0.02 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -33.30 369.40 -9.87 -43.17 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -9.19 Total: -3.17 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.76 Total: -18.09 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.45 Total: -34.80 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.30 -9.87 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.949 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds