Wall clock time and date at job start Tue Mar 31 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 108.85435 * 2 1 4 4 C 1.53998 * 108.82960 * 241.56975 * 2 1 3 5 5 C 1.54071 * 112.85406 * 197.66120 * 4 2 1 6 6 C 1.50470 * 112.41687 * 318.13879 * 5 4 2 7 7 C 1.54231 * 108.51737 * 94.20623 * 6 5 4 8 8 H 1.08996 * 108.89861 * 40.65174 * 7 6 5 9 9 N 1.46498 * 108.89883 * 159.24579 * 7 6 5 10 10 C 1.34781 * 120.00025 * 274.99881 * 9 7 6 11 11 O 1.21285 * 119.99553 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00233 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.47180 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47060 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47230 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47418 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99809 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00030 * 180.02562 * 16 15 14 19 19 N 1.31505 * 119.99738 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99757 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47190 * 89.99947 * 20 18 16 22 22 H 1.48500 * 109.47034 * 209.99502 * 20 18 16 23 23 H 1.48495 * 109.47269 * 329.99693 * 20 18 16 24 24 C 1.45547 * 112.40761 * 279.99534 * 7 6 5 25 25 C 1.50478 * 108.87686 * 118.55820 * 2 1 3 26 26 H 1.09008 * 109.47036 * 301.44127 * 1 2 3 27 27 H 1.09001 * 109.47199 * 61.44069 * 1 2 3 28 28 H 1.09002 * 109.47282 * 181.44768 * 1 2 3 29 29 H 1.09001 * 108.87577 * 76.73727 * 4 2 1 30 30 H 1.09001 * 108.72188 * 318.47770 * 4 2 1 31 31 H 1.09002 * 108.87929 * 197.40739 * 5 4 2 32 32 H 1.08999 * 108.87602 * 78.86520 * 5 4 2 33 33 H 1.09009 * 109.62845 * 213.91245 * 6 5 4 34 34 H 1.08999 * 109.63047 * 334.29315 * 6 5 4 35 35 H 0.96999 * 120.00282 * 94.99172 * 9 7 6 36 36 H 1.09004 * 109.47457 * 300.00252 * 12 10 9 37 37 H 1.09002 * 109.47294 * 60.00027 * 12 10 9 38 38 H 1.08994 * 109.46904 * 300.00380 * 13 12 10 39 39 H 1.09002 * 109.46643 * 60.00204 * 13 12 10 40 40 H 1.09004 * 109.47382 * 300.00090 * 14 13 12 41 41 H 1.09002 * 109.47488 * 59.99939 * 14 13 12 42 42 H 1.09004 * 109.46816 * 300.00197 * 15 14 13 43 43 H 1.09002 * 109.47131 * 59.99480 * 15 14 13 44 44 H 0.97005 * 119.99808 * 180.02562 * 19 18 16 45 45 H 1.09005 * 108.89614 * 182.68690 * 24 7 6 46 46 H 1.08996 * 108.90005 * 301.28165 * 24 7 6 47 47 H 1.09000 * 109.62360 * 95.11022 * 25 2 1 48 48 H 1.08995 * 109.78446 * 334.63102 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8823 1.0315 0.0000 4 6 2.0270 -0.6939 -1.2818 5 6 3.5006 -1.1345 -1.1908 6 6 4.3707 -0.0957 -0.5366 7 6 4.4789 -0.4235 0.9666 8 1 4.5871 -1.5015 1.0860 9 7 5.6685 0.2353 1.5116 10 6 6.8723 -0.3637 1.4195 11 8 6.9706 -1.4484 0.8860 12 6 8.0961 0.3143 1.9795 13 6 9.3219 -0.5710 1.7452 14 6 10.5642 0.1170 2.3144 15 6 11.7900 -0.7680 2.0795 16 6 13.0136 -0.0906 2.6407 17 1 12.9258 0.8748 3.1168 18 6 14.2453 -0.7028 2.5453 19 7 14.3522 -1.8781 1.9651 20 14 15.7622 0.1372 3.2402 21 1 15.9473 -0.2682 4.6567 22 1 16.9548 -0.2627 2.4510 23 1 15.5902 1.6103 3.1654 24 6 3.3114 0.0169 1.7159 25 6 2.0169 -0.6807 1.2506 26 1 -0.3633 0.5361 0.8768 27 1 -0.3634 0.4913 -0.9026 28 1 -0.3634 -1.0273 0.0260 29 1 1.9169 -0.0064 -2.1204 30 1 1.4084 -1.5722 -1.4666 31 1 3.8745 -1.3250 -2.1968 32 1 3.5578 -2.0571 -0.6132 33 1 5.3631 -0.1126 -0.9874 34 1 3.9256 0.8905 -0.6683 35 1 5.5898 1.1028 1.9385 36 1 8.2404 1.2731 1.4815 37 1 7.9640 0.4768 3.0492 38 1 9.1779 -1.5300 2.2430 39 1 9.4538 -0.7331 0.6754 40 1 10.7083 1.0762 1.8170 41 1 10.4320 0.2788 3.3842 42 1 11.6460 -1.7273 2.5766 43 1 11.9220 -0.9294 1.0097 44 1 15.2187 -2.3090 1.8983 45 1 3.4683 -0.1989 2.7728 46 1 3.1960 1.0933 1.5891 47 1 2.2218 -1.7303 1.0400 48 1 1.2593 -0.6049 2.0306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588164875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:15 Heat of formation + Delta-G solvation = -110.645123 kcal Electronic energy + Delta-G solvation = -21918.814532 eV Core-core repulsion = 18777.608395 eV Total energy + Delta-G solvation = -3141.206137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29505 -39.62642 -36.70999 -36.02804 -34.60933 -33.55169 -32.66429 -31.23168 -28.22053 -27.32862 -25.79220 -24.13906 -23.63221 -21.84138 -21.76535 -21.09980 -19.92733 -18.42745 -17.91361 -17.46524 -16.87221 -16.50933 -16.06541 -15.80881 -15.57066 -15.20399 -14.77912 -14.55424 -14.36754 -14.03854 -13.73130 -13.63265 -13.56263 -13.50190 -13.24803 -12.82404 -12.71482 -12.38799 -12.33734 -12.19175 -12.13561 -12.12832 -11.97868 -11.54933 -11.37910 -11.35138 -11.28275 -11.20045 -11.14634 -11.07574 -10.67317 -10.55275 -10.02880 -8.18738 -6.31029 1.40125 1.42675 1.53768 1.69344 2.22830 2.42073 3.13739 3.62132 3.78017 3.82431 3.96033 4.07406 4.08989 4.15924 4.19212 4.28927 4.38267 4.45324 4.49177 4.66140 4.69268 4.76394 4.79869 4.85064 4.86519 4.88457 4.94173 5.06563 5.10438 5.17391 5.19193 5.20532 5.27634 5.29287 5.33385 5.36546 5.38282 5.45837 5.49376 5.56008 5.61316 5.63822 5.77837 5.87831 6.25158 6.62351 6.87372 7.34237 7.38453 8.93512 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.055636 B = 0.002220 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.152408 B =12610.791111 C =12845.389357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.074 0.926 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.118 4.118 7 C 0.150 3.850 8 H 0.054 0.946 9 N -0.719 5.719 10 C 0.510 3.490 11 O -0.588 6.588 12 C -0.129 4.129 13 C -0.095 4.095 14 C -0.095 4.095 15 C 0.018 3.982 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.971 3.029 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.259 1.259 24 C -0.124 4.124 25 C -0.106 4.106 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.416 0.584 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.061 0.939 42 H -0.016 1.016 43 H -0.016 1.016 44 H 0.263 0.737 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.019 9.034 -1.758 32.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.157 4.157 7 C 0.045 3.955 8 H 0.072 0.928 9 N -0.371 5.371 10 C 0.298 3.702 11 O -0.468 6.468 12 C -0.168 4.168 13 C -0.134 4.134 14 C -0.133 4.133 15 C -0.019 4.019 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.161 4.161 25 C -0.144 4.144 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.253 0.747 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.075 0.925 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -30.851 8.149 -2.178 31.983 hybrid contribution 1.244 -0.095 0.111 1.253 sum -29.606 8.054 -2.067 30.752 Atomic orbital electron populations 1.21934 0.94598 1.01847 1.02061 1.20949 0.96014 1.00024 0.93908 0.90794 1.21953 0.94177 1.00520 0.97851 1.21242 0.95615 0.98364 1.00290 1.21642 0.99026 1.00476 0.94556 1.19918 0.85026 0.97238 0.93282 0.92790 1.46184 1.06489 1.23917 1.60518 1.21187 0.85837 0.85126 0.78075 1.90691 1.86724 1.23524 1.45902 1.21678 0.90488 1.00412 1.04252 1.21235 0.93816 0.98202 1.00116 1.21448 0.93068 0.98494 1.00287 1.19064 0.93700 0.94633 0.94521 1.21754 0.93503 1.05136 1.37537 0.91530 1.26123 1.03073 0.95654 0.95731 1.70136 1.25454 1.17010 1.45222 0.85358 0.77709 0.79163 0.78262 1.19691 1.20938 1.18287 1.20721 0.93455 1.02138 0.99831 1.21325 0.95974 0.99446 0.97622 0.91971 0.92618 0.92853 0.91776 0.92030 0.92725 0.93136 0.94248 0.89777 0.74694 0.86465 0.86393 0.94009 0.94054 0.92082 0.92024 0.99771 0.99775 0.92862 0.91135 0.89636 0.92508 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.78 71.98 0.63 -0.58 16 2 C -0.09 -0.90 2.21 -11.27 -0.02 -0.92 16 3 H 0.07 0.68 6.64 -2.39 -0.02 0.67 16 4 C -0.11 -1.32 5.22 31.29 0.16 -1.16 16 5 C -0.12 -2.01 5.32 30.14 0.16 -1.85 16 6 C -0.12 -2.16 5.18 30.19 0.16 -2.01 16 7 C 0.15 2.73 1.97 43.13 0.09 2.82 16 8 H 0.05 1.34 6.82 -2.39 -0.02 1.33 16 9 N -0.72 -13.41 4.99 -451.47 -2.25 -15.66 16 10 C 0.51 14.13 7.68 87.65 0.67 14.81 16 11 O -0.59 -22.59 15.60 -3.05 -0.05 -22.64 16 12 C -0.13 -3.25 5.70 29.85 0.17 -3.08 16 13 C -0.10 -3.55 4.50 30.59 0.14 -3.41 16 14 C -0.10 -3.98 5.15 30.59 0.16 -3.82 16 15 C 0.02 1.00 4.97 29.85 0.15 1.15 16 16 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 17 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 18 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 19 N -0.94 -59.67 13.29 21.45 0.28 -59.38 16 20 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 24 C -0.12 -1.44 4.62 28.74 0.13 -1.31 16 25 C -0.11 -1.14 5.13 30.20 0.15 -0.99 16 26 H 0.06 0.43 8.08 -2.38 -0.02 0.41 16 27 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.74 7.97 -2.39 -0.02 0.72 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.99 6.62 -2.39 -0.02 0.97 16 33 H 0.04 0.95 8.01 -2.38 -0.02 0.93 16 34 H 0.08 1.20 6.99 -2.39 -0.02 1.18 16 35 H 0.42 4.69 8.58 -92.71 -0.80 3.89 16 36 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 39 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H 0.26 15.64 8.31 -92.70 -0.77 14.86 16 45 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.09 0.71 7.47 -2.39 -0.02 0.69 16 47 H 0.06 0.77 6.97 -2.39 -0.02 0.75 16 48 H 0.08 0.70 7.68 -2.39 -0.02 0.68 16 Total: -1.00 -75.49 369.40 3.56 -71.93 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.10 Total: 10.46 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 3.44 Total: -31.95 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.97 Total: -75.04 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.49 3.56 -71.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.715 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds