Wall clock time and date at job start Tue Mar 31 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52998 * 109.46876 * 299.99984 * 8 7 6 10 10 C 1.53005 * 109.46795 * 60.00011 * 8 7 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 12 12 C 1.50703 * 109.46940 * 179.97438 * 11 8 7 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 8 14 14 C 1.37875 * 120.00213 * 180.02562 * 12 11 8 15 15 N 1.31512 * 120.00116 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47129 * 60.00316 * 16 14 12 18 18 H 1.48498 * 109.47276 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47240 * 300.00255 * 16 14 12 20 20 C 1.52999 * 109.47028 * 119.99588 * 2 1 3 21 21 C 1.54265 * 110.03551 * 297.90518 * 20 2 1 22 22 C 1.54962 * 104.16636 * 217.13502 * 21 20 2 23 23 C 1.54891 * 102.77138 * 37.89050 * 22 21 20 24 24 C 1.53876 * 110.03223 * 180.69132 * 20 2 1 25 25 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 26 26 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 27 27 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 29 29 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 30 30 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 31 31 H 1.08996 * 109.47009 * 60.00253 * 9 8 7 32 32 H 1.09004 * 109.46783 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.47156 * 300.00070 * 9 8 7 34 34 H 1.09000 * 109.47011 * 60.00556 * 10 8 7 35 35 H 1.09004 * 109.46658 * 180.02562 * 10 8 7 36 36 H 1.08996 * 109.47069 * 299.99740 * 10 8 7 37 37 H 1.08995 * 109.47672 * 299.99669 * 11 8 7 38 38 H 1.09007 * 109.47288 * 60.00489 * 11 8 7 39 39 H 0.97000 * 120.00572 * 179.97438 * 15 14 12 40 40 H 1.08998 * 110.02177 * 59.30165 * 20 2 1 41 41 H 1.09003 * 110.48941 * 335.78823 * 21 20 2 42 42 H 1.09004 * 110.48356 * 98.42853 * 21 20 2 43 43 H 1.09000 * 110.72142 * 279.58315 * 22 21 20 44 44 H 1.08998 * 110.76577 * 156.22410 * 22 21 20 45 45 H 1.09007 * 110.48630 * 203.40526 * 23 22 21 46 46 H 1.09001 * 110.59830 * 80.82154 * 23 22 21 47 47 H 1.09005 * 110.03423 * 238.56712 * 24 20 2 48 48 H 1.08994 * 110.03389 * 0.02562 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 6 1.6946 -0.2128 -4.8999 9 6 0.1647 -0.2135 -4.9059 10 6 2.2040 1.2300 -4.8939 11 6 2.2104 -0.9301 -6.1490 12 6 1.7121 -0.2169 -7.3795 13 1 1.0901 0.6604 -7.2805 14 6 2.0502 -0.6844 -8.6318 15 7 2.8071 -1.7531 -8.7524 16 14 1.4330 0.2000 -10.1570 17 1 1.9275 1.6002 -10.1514 18 1 1.9325 -0.4970 -11.3695 19 1 -0.0520 0.1994 -10.1628 20 6 2.0399 -0.7212 1.2493 21 6 1.5766 0.0259 2.5170 22 6 2.7746 -0.1017 3.4915 23 6 3.9974 0.0385 2.5512 24 6 3.5785 -0.7136 1.2711 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.1493 0.5388 -2.5436 29 1 3.2901 -0.9367 -3.6464 30 1 1.8372 -1.9650 -3.6549 31 1 -0.2024 0.2978 -4.0160 32 1 -0.1954 0.3030 -5.7957 33 1 -0.1982 -1.2413 -4.9101 34 1 3.2940 1.2304 -4.8897 35 1 1.8436 1.7462 -5.7838 36 1 1.8369 1.7412 -4.0040 37 1 3.3003 -0.9292 -6.1446 38 1 1.8478 -1.9581 -6.1535 39 1 3.0447 -2.0823 -9.6334 40 1 1.6714 -1.7468 1.2647 41 1 1.3785 1.0738 2.2913 42 1 0.6899 -0.4490 2.9370 43 1 2.7725 -1.0762 3.9797 44 1 2.7602 0.7010 4.2288 45 1 4.8766 -0.4270 2.9967 46 1 4.1931 1.0878 2.3305 47 1 3.9566 -1.7356 1.2979 48 1 3.9619 -0.1958 0.3920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588177832.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:42 Heat of formation + Delta-G solvation = -85.935993 kcal Electronic energy + Delta-G solvation = -22925.421390 eV Core-core repulsion = 19785.286722 eV Total energy + Delta-G solvation = -3140.134668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17724 -38.16055 -36.87582 -33.83408 -33.15217 -31.95459 -28.86246 -27.82177 -27.10709 -26.51725 -26.25297 -24.00233 -22.60214 -20.73852 -20.32281 -19.52826 -18.21402 -16.81868 -16.33996 -15.94474 -15.55455 -15.06333 -14.91835 -14.48315 -13.97652 -13.65338 -13.44651 -13.29167 -13.10411 -12.82227 -12.70136 -12.38588 -12.08066 -12.05357 -11.64095 -11.22229 -11.18707 -11.14164 -11.07130 -10.99957 -10.87411 -10.81600 -10.71182 -10.63292 -10.41436 -10.37543 -10.26564 -9.87376 -9.57347 -9.12028 -8.92697 -8.66024 -8.36005 -6.00039 -4.01535 2.89745 3.31547 3.37063 3.37856 3.49372 4.41093 4.44776 4.48567 4.55777 4.90615 4.94742 5.01703 5.28274 5.35278 5.35458 5.47061 5.49327 5.50634 5.54528 5.59868 5.63413 5.64826 5.68848 5.75411 5.80901 5.89504 5.97549 6.04123 6.16891 6.17918 6.23214 6.29854 6.34609 6.38074 6.39994 6.59394 6.62440 6.79604 7.06216 7.06990 7.13200 7.63667 7.76347 7.81426 7.98570 8.40075 8.51248 9.03095 9.61536 11.11407 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040430 B = 0.003072 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.385413 B = 9112.224552 C = 9370.965498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.093 0.907 4 C 0.509 3.491 5 O -0.542 6.542 6 N -0.722 5.722 7 C 0.128 3.872 8 C -0.073 4.073 9 C -0.126 4.126 10 C -0.127 4.127 11 C 0.036 3.964 12 C -0.512 4.512 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.070 4.070 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.108 4.108 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.397 0.603 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.028 0.972 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 6.089 21.540 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.111 0.889 4 C 0.295 3.705 5 O -0.419 6.419 6 N -0.374 5.374 7 C 0.005 3.995 8 C -0.073 4.073 9 C -0.183 4.183 10 C -0.184 4.184 11 C -0.001 4.001 12 C -0.550 4.550 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.089 4.089 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.166 4.166 24 C -0.146 4.146 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.232 0.768 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.067 5.245 21.455 22.299 hybrid contribution -0.528 0.782 -1.134 1.475 sum -3.595 6.027 20.321 21.499 Atomic orbital electron populations 1.21798 0.93164 1.02789 1.02472 1.21482 0.97284 1.00582 0.93371 0.88857 1.20592 0.80392 0.84847 0.84694 1.90688 1.37983 1.26398 1.86854 1.46242 1.53151 1.32050 1.05962 1.21597 0.98752 0.96029 0.83087 1.20900 0.95462 0.95800 0.95134 1.21752 0.95296 1.01130 1.00168 1.21758 1.00506 0.95944 1.00173 1.19081 0.96291 0.95234 0.89492 1.21148 1.31198 1.12126 0.90548 0.92327 1.25012 0.95310 0.95082 0.99074 1.69952 1.36800 1.23097 1.23559 0.86711 0.79119 0.79786 0.82680 1.20328 1.21389 1.20332 1.21561 0.95878 0.99384 0.92069 1.22476 0.97835 1.00345 0.95039 1.22498 0.94977 1.01397 0.97371 1.22434 0.97686 1.00370 0.96159 1.22092 0.94581 1.00900 0.96987 0.91489 0.92139 0.92061 0.76806 0.91979 0.91965 0.95288 0.91477 0.93398 0.93401 0.91465 0.95294 0.96387 0.96384 0.92971 0.90507 0.91495 0.91726 0.91625 0.91883 0.92010 0.91970 0.91490 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.88 37.16 0.33 -0.93 16 2 C -0.11 -1.11 2.01 -91.78 -0.18 -1.30 16 3 H 0.09 0.87 8.13 -51.93 -0.42 0.44 16 4 C 0.51 7.41 6.55 -10.99 -0.07 7.34 16 5 O -0.54 -9.92 14.71 5.55 0.08 -9.84 16 6 N -0.72 -10.41 4.85 -60.29 -0.29 -10.70 16 7 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 8 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 9 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 10 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 11 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 12 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 13 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 16 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.07 -0.73 2.12 -89.50 -0.19 -0.92 16 21 C -0.12 -0.96 5.30 -25.03 -0.13 -1.09 16 22 C -0.12 -0.99 6.91 -24.70 -0.17 -1.16 16 23 C -0.13 -1.17 6.83 -25.07 -0.17 -1.34 16 24 C -0.11 -1.24 5.10 -25.61 -0.13 -1.37 16 25 H 0.07 0.47 7.22 -51.93 -0.38 0.09 16 26 H 0.06 0.50 7.56 -51.93 -0.39 0.10 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.40 4.86 5.58 -40.82 -0.23 4.63 16 29 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 32 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 36 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 41 H 0.07 0.49 7.72 -51.93 -0.40 0.09 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.81 6.96 -51.93 -0.36 0.45 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -30.14 363.85 -8.64 -38.78 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.93 Total: 1.24 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.70 Total: -15.38 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.44 Total: -36.46 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.14 -8.64 -38.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177832.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.160 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds