Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46820 * 2 1 4 4 C 1.52993 * 109.47608 * 120.00542 * 2 1 3 5 5 C 1.52995 * 109.47365 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47229 * 299.99571 * 5 4 2 7 7 C 1.53008 * 109.46698 * 60.00272 * 6 5 4 8 8 C 1.53002 * 109.46900 * 299.99631 * 7 6 5 9 9 H 1.09004 * 109.46758 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47344 * 300.00425 * 8 7 6 11 11 C 1.46498 * 120.00458 * 6.61052 * 10 8 7 12 12 C 1.34779 * 119.99929 * 186.61517 * 10 8 7 13 13 O 1.21278 * 120.00074 * 6.24659 * 12 10 8 14 14 C 1.50700 * 120.00064 * 186.24442 * 12 10 8 15 15 C 1.53001 * 109.47074 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.46865 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46939 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47148 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99746 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99914 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00227 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99872 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47317 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46900 * 120.00465 * 22 20 18 25 25 H 1.48504 * 109.47323 * 240.00256 * 22 20 18 26 26 H 1.09004 * 109.46630 * 185.83261 * 1 2 3 27 27 H 1.09001 * 109.47206 * 305.82980 * 1 2 3 28 28 H 1.08996 * 109.47200 * 65.83513 * 1 2 3 29 29 H 1.09003 * 109.47092 * 59.99556 * 4 2 1 30 30 H 1.09005 * 109.46901 * 300.00304 * 4 2 1 31 31 H 1.09004 * 109.46915 * 180.02562 * 5 4 2 32 32 H 1.08997 * 109.47116 * 60.00228 * 5 4 2 33 33 H 1.09002 * 109.47605 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47608 * 300.00356 * 6 5 4 35 35 H 1.08994 * 109.47377 * 60.00109 * 7 6 5 36 36 H 1.09004 * 109.46928 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.46937 * 92.36994 * 11 10 8 38 38 H 1.09003 * 109.47804 * 212.37488 * 11 10 8 39 39 H 1.09002 * 109.46967 * 332.37387 * 11 10 8 40 40 H 1.08994 * 109.47365 * 299.99988 * 14 12 10 41 41 H 1.09005 * 109.46991 * 60.00303 * 14 12 10 42 42 H 1.08994 * 109.47292 * 300.00372 * 15 14 12 43 43 H 1.09004 * 109.47126 * 60.00749 * 15 14 12 44 44 H 1.09003 * 109.47143 * 299.99881 * 16 15 14 45 45 H 1.08997 * 109.47121 * 59.99972 * 16 15 14 46 46 H 1.09003 * 109.46788 * 299.99710 * 17 16 15 47 47 H 1.08998 * 109.47115 * 59.99556 * 17 16 15 48 48 H 0.96997 * 119.99891 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5701 -0.7207 1.2493 6 6 4.0806 -1.4415 0.0001 7 6 3.5705 -0.7201 -1.2491 8 6 2.0405 -0.7208 -1.2494 9 1 1.6771 -0.2072 -2.1395 10 7 1.5527 -2.1021 -1.2497 11 6 2.4971 -3.2126 -1.1037 12 6 0.2351 -2.3515 -1.3844 13 8 -0.5332 -1.4428 -1.6185 14 6 -0.2836 -3.7594 -1.2442 15 6 -1.8010 -3.7659 -1.4402 16 6 -2.3276 -5.1953 -1.2972 17 6 -3.8449 -5.2018 -1.4937 18 6 -4.3636 -6.6098 -1.3535 19 1 -3.6794 -7.4189 -1.1447 20 6 -5.7115 -6.8647 -1.4908 21 7 -6.5447 -5.8793 -1.7446 22 14 -6.3545 -8.6099 -1.3163 23 1 -5.2227 -9.5285 -1.0329 24 1 -7.3306 -8.6683 -0.1987 25 1 -7.0216 -9.0202 -2.5780 26 1 -0.3633 -1.0224 0.1044 27 1 -0.3634 0.6016 0.8332 28 1 -0.3633 0.4207 -0.9376 29 1 1.6767 -1.7490 1.2490 30 1 1.6767 -0.2076 2.1391 31 1 3.9334 -1.2350 2.1391 32 1 3.9330 0.3071 1.2497 33 1 5.1706 -1.4408 0.0000 34 1 3.7176 -2.4693 -0.0002 35 1 3.9334 0.3076 -1.2488 36 1 3.9338 -1.2339 -2.1392 37 1 2.5875 -3.4764 -0.0500 38 1 2.1344 -4.0742 -1.6643 39 1 3.4721 -2.9132 -1.4882 40 1 0.1829 -4.3951 -1.9967 41 1 -0.0444 -4.1375 -0.2502 42 1 -2.2672 -3.1302 -0.6874 43 1 -2.0406 -3.3878 -2.4340 44 1 -1.8614 -5.8313 -2.0497 45 1 -2.0880 -5.5731 -0.3032 46 1 -4.3114 -4.5658 -0.7414 47 1 -4.0842 -4.8241 -2.4878 48 1 -7.4931 -6.0587 -1.8409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588277026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = -32.852342 kcal Electronic energy + Delta-G solvation = -23200.787885 eV Core-core repulsion = 20062.955096 eV Total energy + Delta-G solvation = -3137.832789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13392 -38.27734 -34.99765 -34.72609 -32.92423 -32.51125 -30.79314 -29.33294 -27.65075 -25.98913 -25.39638 -22.95111 -22.01638 -21.52007 -20.26766 -19.85122 -18.67628 -16.86132 -16.79634 -16.13146 -15.73903 -15.22145 -14.79583 -14.54692 -14.42367 -14.01358 -13.82742 -13.40912 -13.27592 -12.70132 -12.62136 -12.42642 -12.29730 -12.17131 -11.99642 -11.63407 -11.58393 -11.52918 -11.32763 -10.98172 -10.72668 -10.53601 -10.47074 -10.44085 -10.36484 -10.21052 -10.18641 -9.57916 -9.46514 -9.15939 -8.93840 -8.41960 -8.28785 -5.93404 -3.95768 2.78531 2.97346 3.34325 3.41462 3.45466 4.36060 4.44408 4.50375 4.51397 4.76770 4.88709 4.93199 4.97013 5.14353 5.20547 5.21627 5.24186 5.32876 5.38546 5.41802 5.44259 5.45237 5.48870 5.69374 5.73137 5.75795 5.85864 5.93428 5.95048 5.98073 6.09227 6.17498 6.18894 6.27011 6.34448 6.53423 6.62664 6.70769 6.88161 7.05662 7.23122 7.41110 7.76781 7.92971 8.08437 8.33131 8.50369 9.12283 9.67862 11.17965 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034524 B = 0.002963 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.837482 B = 9446.937498 C = 9702.896736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.158 4.158 7 C -0.125 4.125 8 C 0.154 3.846 9 H 0.076 0.924 10 N -0.614 5.614 11 C 0.068 3.932 12 C 0.503 3.497 13 O -0.516 6.516 14 C -0.137 4.137 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.890 3.110 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.897 10.441 3.625 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.195 4.195 7 C -0.163 4.163 8 C 0.051 3.949 9 H 0.094 0.906 10 N -0.350 5.350 11 C -0.074 4.074 12 C 0.293 3.707 13 O -0.391 6.391 14 C -0.177 4.177 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 24.300 10.969 3.463 26.885 hybrid contribution -0.319 -0.888 0.162 0.957 sum 23.981 10.081 3.625 26.266 Atomic orbital electron populations 1.22425 0.93291 1.03264 1.01068 1.21571 0.97233 0.98719 0.94376 0.91121 1.21555 0.94980 1.01041 0.97425 1.21504 0.95923 1.00391 0.97609 1.22452 1.00303 1.02381 0.94334 1.21792 0.94231 1.01723 0.98506 1.21011 0.93263 0.82407 0.98205 0.90644 1.47868 1.06755 1.06196 1.74132 1.22223 0.94386 0.89659 1.01168 1.20848 0.81179 0.91833 0.76849 1.90771 1.56450 1.46108 1.45807 1.21827 0.99533 0.92927 1.03416 1.21451 0.90886 0.99113 1.02609 1.21644 0.99912 0.93256 0.99937 1.19096 0.88716 0.96759 0.97150 1.21327 0.92478 0.93884 1.48045 0.92725 1.25045 0.97182 0.96902 0.95479 1.69988 1.03067 1.31033 1.49393 0.86564 0.78885 0.85082 0.77624 1.19776 1.21067 1.21061 0.90926 0.95131 0.91142 0.91870 0.92280 0.92220 0.92423 0.92179 0.88516 0.90649 0.91339 0.92160 0.91301 0.89813 0.89410 0.89529 0.91919 0.91871 0.93567 0.93570 0.96623 0.96619 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.29 37.16 0.27 -1.65 16 2 C -0.10 -1.03 2.54 -90.62 -0.23 -1.26 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.04 5.04 -26.74 -0.13 -1.18 16 5 C -0.12 -0.85 5.92 -26.74 -0.16 -1.01 16 6 C -0.16 -1.00 5.15 -26.73 -0.14 -1.14 16 7 C -0.12 -0.87 4.93 -26.73 -0.13 -1.01 16 8 C 0.15 1.52 2.63 -67.93 -0.18 1.34 16 9 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 10 N -0.61 -6.42 2.22 -174.08 -0.39 -6.81 16 11 C 0.07 0.50 7.93 59.85 0.47 0.97 16 12 C 0.50 6.96 6.01 -10.98 -0.07 6.89 16 13 O -0.52 -8.81 11.14 5.56 0.06 -8.75 16 14 C -0.14 -1.86 4.43 -27.88 -0.12 -1.99 16 15 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 16 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 17 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 18 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 19 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.72 13.29 55.43 0.74 -26.99 16 22 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H 0.07 1.11 4.94 -52.12 -0.26 0.86 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 1.06 6.88 -51.93 -0.36 0.70 16 29 H 0.06 0.65 7.36 -51.93 -0.38 0.27 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.59 3.22 -52.12 -0.17 0.42 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.44 7.22 -51.93 -0.37 0.06 16 37 H 0.06 0.40 6.67 -51.93 -0.35 0.05 16 38 H 0.07 0.48 6.59 -51.93 -0.34 0.13 16 39 H 0.08 0.48 4.76 -51.93 -0.25 0.23 16 40 H 0.09 1.05 7.23 -51.93 -0.38 0.67 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 43 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -32.47 351.47 -9.26 -41.73 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -8.72 Total: -3.59 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.22 Total: -17.91 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.35 Total: -33.80 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.06 Total: -8.75 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.47 -9.26 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588277026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.878 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds