Wall clock time and date at job start Tue Mar 31 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 108.45760 * 2 1 4 4 C 1.52535 * 108.51958 * 117.56400 * 2 1 3 5 5 C 1.50117 * 105.41191 * 210.65188 * 4 2 1 6 6 C 1.54842 * 110.81853 * 262.31641 * 5 4 2 7 7 C 1.54903 * 110.14109 * 38.86852 * 6 5 4 8 8 H 1.09006 * 108.15758 * 279.64284 * 7 6 5 9 9 C 1.52993 * 108.16239 * 162.86925 * 7 6 5 10 10 N 1.43436 * 116.07752 * 41.35877 * 7 6 5 11 11 C 1.34778 * 120.53675 * 88.45756 * 10 7 6 12 12 O 1.21280 * 119.99671 * 4.39330 * 11 10 7 13 13 C 1.50692 * 119.99915 * 184.39531 * 11 10 7 14 14 C 1.53001 * 109.46939 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47153 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47153 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46912 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00587 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99815 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99972 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99923 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47238 * 60.00076 * 21 19 17 23 23 H 1.48493 * 109.46887 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47212 * 299.99924 * 21 19 17 25 25 C 1.46233 * 108.52359 * 242.28220 * 2 1 3 26 26 H 1.09002 * 109.47107 * 177.71355 * 1 2 3 27 27 H 1.08996 * 109.47785 * 297.71467 * 1 2 3 28 28 H 1.09005 * 109.46992 * 57.72261 * 1 2 3 29 29 H 1.09002 * 110.24766 * 329.62370 * 4 2 1 30 30 H 1.08999 * 110.24792 * 91.68012 * 4 2 1 31 31 H 1.09004 * 109.21037 * 22.66097 * 5 4 2 32 32 H 1.09003 * 109.21064 * 142.01574 * 5 4 2 33 33 H 1.09001 * 109.36358 * 159.07295 * 6 5 4 34 34 H 1.09001 * 109.35942 * 278.66686 * 6 5 4 35 35 H 1.08999 * 109.47306 * 72.06869 * 9 7 6 36 36 H 1.08996 * 109.47486 * 192.07588 * 9 7 6 37 37 H 1.09003 * 109.46973 * 312.07355 * 9 7 6 38 38 H 1.09000 * 109.47100 * 299.99564 * 13 11 10 39 39 H 1.09001 * 109.47409 * 59.99977 * 13 11 10 40 40 H 1.08996 * 109.47497 * 300.00104 * 14 13 11 41 41 H 1.08998 * 109.46729 * 60.00436 * 14 13 11 42 42 H 1.09000 * 109.47166 * 300.00019 * 15 14 13 43 43 H 1.09001 * 109.47129 * 60.00300 * 15 14 13 44 44 H 1.08996 * 109.47497 * 300.00316 * 16 15 14 45 45 H 1.09007 * 109.46875 * 60.00853 * 16 15 14 46 46 H 0.96998 * 120.00008 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.84873 * 299.85711 * 25 2 1 48 48 H 1.09003 * 109.84261 * 60.84656 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8751 1.0339 0.0000 4 6 2.0145 -0.6693 1.2822 5 6 3.3218 -0.0073 1.6084 6 6 4.5117 -0.8626 1.1082 7 6 4.1756 -1.4916 -0.2669 8 1 3.5555 -2.3715 -0.0955 9 6 5.4836 -1.9526 -0.9129 10 7 3.4961 -0.6405 -1.2004 11 6 4.1939 0.1499 -2.0399 12 8 5.4048 0.0874 -2.0658 13 6 3.4694 1.1114 -2.9463 14 6 4.4870 1.8827 -3.7892 15 6 3.7514 2.8585 -4.7100 16 6 4.7690 3.6294 -5.5534 17 6 4.0444 4.5900 -6.4607 18 1 2.9661 4.6455 -6.4379 19 6 4.7582 5.3981 -7.3202 20 7 6.0712 5.3303 -7.3484 21 14 3.8601 6.5893 -8.4444 22 1 3.0720 7.5448 -7.6250 23 1 4.8477 7.3374 -9.2630 24 1 2.9468 5.8333 -9.3384 25 6 1.9946 -0.6449 -1.2275 26 1 -0.3633 -1.0269 -0.0410 27 1 -0.3634 0.4779 0.9097 28 1 -0.3633 0.5488 -0.8689 29 1 1.2978 -0.5060 2.0870 30 1 2.1628 -1.7366 1.1178 31 1 3.3574 0.9714 1.1298 32 1 3.4004 0.1187 2.6883 33 1 5.3948 -0.2312 1.0106 34 1 4.7146 -1.6554 1.8282 35 1 5.8564 -2.8333 -0.3901 36 1 5.3048 -2.1997 -1.9593 37 1 6.2217 -1.1530 -0.8495 38 1 2.7991 0.5567 -3.6030 39 1 2.8908 1.8123 -2.3446 40 1 5.1570 2.4374 -3.1324 41 1 5.0658 1.1821 -4.3910 42 1 3.0817 2.3035 -5.3669 43 1 3.1722 3.5592 -4.1086 44 1 5.4390 4.1844 -4.8969 45 1 5.3477 2.9284 -6.1549 46 1 6.5734 5.8990 -7.9527 47 1 1.6282 -1.6707 -1.2681 48 1 1.6386 -0.0892 -2.0950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588460879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:31 Heat of formation + Delta-G solvation = -62.018513 kcal Electronic energy + Delta-G solvation = -22991.407892 eV Core-core repulsion = 19852.310363 eV Total energy + Delta-G solvation = -3139.097529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83940 -38.16710 -35.34227 -34.45082 -33.86176 -32.53332 -30.51758 -29.23999 -26.57992 -26.41602 -25.57245 -23.62253 -22.23533 -21.19368 -20.38104 -19.90698 -18.54880 -16.77439 -16.34982 -16.02273 -15.87924 -15.16671 -14.99216 -14.56572 -14.44658 -14.14110 -13.76379 -13.25609 -12.95273 -12.77271 -12.64199 -12.50577 -12.47861 -12.14434 -11.90709 -11.72185 -11.61960 -11.54384 -11.33821 -11.06593 -10.94326 -10.75689 -10.69223 -10.55321 -10.49660 -10.47328 -10.34700 -9.57779 -9.32299 -9.06657 -8.91852 -8.67359 -8.28149 -5.93014 -3.95556 2.76854 2.91602 3.36618 3.40932 3.43170 4.28101 4.38532 4.50932 4.55554 4.71040 4.73783 4.88061 4.92677 5.08391 5.24865 5.25943 5.31095 5.38055 5.39023 5.41579 5.42119 5.44757 5.51268 5.63692 5.68865 5.79029 5.81084 5.91013 5.92605 5.96947 6.01842 6.08958 6.11068 6.18100 6.32760 6.36458 6.58727 6.74197 6.87989 7.05412 7.23056 7.40405 7.76327 7.93064 8.08612 8.37074 8.50381 9.12020 9.67855 11.18312 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.003175 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.528495 B = 8817.724245 C = 9545.953835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.130 4.130 7 C 0.146 3.854 8 H 0.068 0.932 9 C -0.155 4.155 10 N -0.612 5.612 11 C 0.516 3.484 12 O -0.527 6.527 13 C -0.139 4.139 14 C -0.102 4.102 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.053 0.947 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.118 3.882 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.015 0.985 45 H 0.015 0.985 46 H 0.260 0.740 47 H 0.074 0.926 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 -15.955 19.187 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.169 4.169 7 C 0.041 3.959 8 H 0.086 0.914 9 C -0.212 4.212 10 N -0.347 5.347 11 C 0.305 3.695 12 O -0.403 6.403 13 C -0.179 4.179 14 C -0.140 4.140 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.004 4.004 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.649 -15.911 19.059 26.637 hybrid contribution -0.564 0.694 -0.565 1.058 sum -10.213 -15.217 18.494 26.036 Atomic orbital electron populations 1.21952 0.94654 1.01963 1.02267 1.20550 0.96311 1.01270 0.95479 0.90605 1.21135 0.96996 1.00120 0.96651 1.21554 0.94394 0.99441 1.00430 1.22699 0.98495 0.99782 0.95891 1.20597 0.94500 0.91720 0.89119 0.91354 1.22390 0.97625 1.01163 1.00028 1.48236 1.06474 1.43566 1.36383 1.21004 0.87937 0.80337 0.80203 1.90680 1.14176 1.67355 1.68115 1.21837 1.00271 0.97605 0.98167 1.21444 0.96863 0.98058 0.97665 1.21646 0.99226 0.96747 0.97131 1.19088 0.93894 0.94550 0.94141 1.21254 0.93067 1.20810 1.20785 0.92828 1.25041 0.94830 0.97351 0.97328 1.69964 1.05492 1.39795 1.38236 0.86674 0.79401 0.81214 0.80787 1.20293 1.21325 1.20283 1.21174 0.78764 1.01761 0.98659 0.92564 0.92356 0.92353 0.91407 0.91323 0.91844 0.92520 0.91508 0.91221 0.93968 0.92677 0.89497 0.89450 0.89446 0.91899 0.91864 0.93554 0.93575 0.96627 0.96613 0.92999 0.90772 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.91 37.16 0.33 -0.55 16 2 C -0.12 -0.84 2.22 -94.07 -0.21 -1.05 16 3 H 0.08 0.65 6.92 -51.93 -0.36 0.29 16 4 C -0.11 -0.77 5.19 -28.40 -0.15 -0.92 16 5 C -0.12 -1.01 5.65 -27.19 -0.15 -1.16 16 6 C -0.13 -1.20 5.73 -24.76 -0.14 -1.34 16 7 C 0.15 1.48 2.21 -68.55 -0.15 1.33 16 8 H 0.07 0.59 6.89 -51.93 -0.36 0.23 16 9 C -0.15 -1.86 7.69 37.15 0.29 -1.58 16 10 N -0.61 -6.67 2.49 -167.83 -0.42 -7.09 16 11 C 0.52 7.37 7.28 -10.99 -0.08 7.29 16 12 O -0.53 -9.37 12.37 5.56 0.07 -9.30 16 13 C -0.14 -1.92 4.13 -27.89 -0.12 -2.03 16 14 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 15 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 17 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.12 0.93 5.03 -5.20 -0.03 0.90 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.33 7.98 -51.93 -0.41 -0.08 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.41 7.73 -51.93 -0.40 0.01 16 30 H 0.07 0.46 6.29 -51.93 -0.33 0.13 16 31 H 0.06 0.63 6.82 -51.93 -0.35 0.28 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.75 7.51 -51.93 -0.39 0.36 16 37 H 0.09 1.26 6.00 -51.93 -0.31 0.95 16 38 H 0.09 1.05 7.47 -51.93 -0.39 0.66 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 48 H 0.09 0.69 6.11 -51.93 -0.32 0.38 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.58 361.53 -9.46 -42.03 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -9.06 Total: -4.03 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -1.22 Total: -17.05 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.32 Total: -34.12 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.58 -9.46 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588460879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.986 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds