Wall clock time and date at job start Tue Mar 31 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.18300 * 2 1 4 4 C 1.47086 * 109.33010 * 240.43445 * 2 1 3 5 5 C 1.52566 * 114.32799 * 176.93948 * 4 2 1 6 6 C 1.50876 * 109.36172 * 85.00998 * 5 4 2 7 7 C 1.53601 * 109.95320 * 268.02709 * 6 5 4 8 8 H 1.09000 * 108.93825 * 280.02113 * 7 6 5 9 9 C 1.53002 * 108.75667 * 161.51306 * 7 6 5 10 10 N 1.47602 * 112.34282 * 40.83194 * 7 6 5 11 11 C 1.34777 * 118.64634 * 222.03986 * 10 7 6 12 12 O 1.21279 * 119.99633 * 359.73108 * 11 10 7 13 13 C 1.50701 * 120.00115 * 179.72709 * 11 10 7 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 90.00289 * 21 19 17 23 23 H 1.48505 * 109.47195 * 210.00171 * 21 19 17 24 24 H 1.48493 * 109.47449 * 330.00136 * 21 19 17 25 25 C 1.44589 * 122.71003 * 41.75725 * 10 7 6 26 26 H 1.09005 * 109.47514 * 300.43736 * 1 2 3 27 27 H 1.09002 * 109.47439 * 60.43650 * 1 2 3 28 28 H 1.08997 * 109.47427 * 180.43512 * 1 2 3 29 29 H 1.09002 * 108.51328 * 298.19338 * 4 2 1 30 30 H 1.09001 * 108.51688 * 55.83815 * 4 2 1 31 31 H 1.09005 * 109.49266 * 204.97540 * 5 4 2 32 32 H 1.08999 * 109.48979 * 325.04532 * 5 4 2 33 33 H 1.09000 * 109.36820 * 28.30303 * 6 5 4 34 34 H 1.08997 * 109.37014 * 148.05287 * 6 5 4 35 35 H 1.08999 * 109.47086 * 297.25145 * 9 7 6 36 36 H 1.09001 * 109.46849 * 57.24540 * 9 7 6 37 37 H 1.09002 * 109.47503 * 177.25264 * 9 7 6 38 38 H 1.09002 * 109.47060 * 60.00000 * 13 11 10 39 39 H 1.09001 * 109.46927 * 300.00196 * 13 11 10 40 40 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 41 41 H 1.09001 * 109.46832 * 300.00193 * 14 13 11 42 42 H 1.09002 * 109.47103 * 59.99753 * 15 14 13 43 43 H 1.08998 * 109.46862 * 300.00565 * 15 14 13 44 44 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 45 45 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 46 46 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.44849 * 29.57081 * 25 10 7 48 48 H 1.08997 * 109.44668 * 149.49417 * 25 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8882 1.0295 0.0000 4 6 2.0169 -0.6848 -1.2072 5 6 3.5349 -0.6862 -1.3600 6 6 4.1147 -1.8427 -0.5837 7 6 4.4800 -1.3893 0.8377 8 1 5.4364 -0.8673 0.8077 9 6 4.6192 -2.6258 1.7280 10 7 3.4624 -0.4921 1.4193 11 6 3.8738 0.5881 2.1125 12 8 5.0591 0.8038 2.2519 13 6 2.8609 1.5279 2.7142 14 6 3.5863 2.6619 3.4414 15 6 2.5581 3.6156 4.0528 16 6 3.2835 4.7493 4.7805 17 6 2.2706 5.6891 5.3822 18 1 1.2151 5.4968 5.2583 19 6 2.6915 6.7938 6.0917 20 7 3.9768 7.0276 6.2430 21 14 1.4361 7.9583 6.8381 22 1 1.1024 7.5106 8.2141 23 1 2.0017 9.3305 6.8876 24 1 0.2061 7.9597 6.0061 25 6 2.0425 -0.7210 1.2711 26 1 -0.3634 0.5206 0.8861 27 1 -0.3634 0.5070 -0.8939 28 1 -0.3634 -1.0276 0.0078 29 1 1.6706 -1.7181 -1.1824 30 1 1.5838 -0.1969 -2.0804 31 1 3.7943 -0.7890 -2.4137 32 1 3.9399 0.2497 -0.9751 33 1 3.3812 -2.6473 -0.5319 34 1 5.0115 -2.2030 -1.0877 35 1 3.6614 -3.1430 1.7839 36 1 5.3692 -3.2947 1.3059 37 1 4.9262 -2.3206 2.7284 38 1 2.2355 0.9835 3.4217 39 1 2.2370 1.9444 1.9233 40 1 4.2114 3.2062 2.7335 41 1 4.2105 2.2456 4.2321 42 1 1.9333 3.0711 4.7607 43 1 1.9335 4.0317 3.2623 44 1 3.9086 5.2939 4.0729 45 1 3.9077 4.3327 5.5710 46 1 4.2729 7.8051 6.7419 47 1 1.8547 -1.7910 1.1820 48 1 1.5191 -0.3325 2.1447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588460880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:34 Heat of formation + Delta-G solvation = -79.813183 kcal Electronic energy + Delta-G solvation = -22942.714211 eV Core-core repulsion = 19802.845047 eV Total energy + Delta-G solvation = -3139.869163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69013 -38.06172 -35.34248 -34.62023 -33.95854 -32.50581 -30.56925 -29.43263 -26.66519 -26.40344 -25.66900 -23.26742 -22.40773 -20.66379 -20.64350 -19.92957 -18.63362 -17.09525 -16.51192 -16.11290 -15.82316 -15.10722 -14.79782 -14.50683 -14.31122 -14.08246 -13.76239 -13.52214 -13.20363 -12.82710 -12.64925 -12.46896 -12.33855 -12.26216 -11.97730 -11.74645 -11.58281 -11.54296 -11.49488 -11.04584 -10.97386 -10.89728 -10.74053 -10.53833 -10.47004 -10.44468 -10.34971 -9.64045 -9.57190 -9.17472 -8.94546 -8.68101 -8.28022 -5.92779 -3.95188 2.75657 2.94158 3.35586 3.41515 3.44779 4.25116 4.45679 4.50867 4.59202 4.61705 4.71120 4.79932 5.01404 5.13401 5.17703 5.20579 5.29724 5.32248 5.38144 5.42075 5.43381 5.48145 5.53757 5.55424 5.59363 5.64137 5.81205 5.84515 5.89134 5.92924 5.96273 6.01955 6.08382 6.17212 6.19478 6.35157 6.55189 6.63068 6.88496 7.06244 7.23545 7.40080 7.77067 7.93546 8.08994 8.30540 8.50796 9.12588 9.68273 11.18579 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.003171 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.201889 B = 8827.505985 C = 9490.994003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.124 4.124 7 C 0.135 3.865 8 H 0.096 0.904 9 C -0.160 4.160 10 N -0.607 5.607 11 C 0.510 3.490 12 O -0.536 6.536 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.115 3.885 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.015 0.985 46 H 0.260 0.740 47 H 0.074 0.926 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 -21.689 -15.894 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.162 4.162 7 C 0.032 3.968 8 H 0.114 0.886 9 C -0.219 4.219 10 N -0.340 5.340 11 C 0.299 3.701 12 O -0.412 6.412 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.009 4.009 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.078 -21.471 -15.743 26.935 hybrid contribution -0.749 0.628 0.393 1.054 sum -4.827 -20.843 -15.350 26.332 Atomic orbital electron populations 1.21810 0.94303 1.01884 1.02395 1.20882 0.96076 1.00768 0.95527 0.90688 1.20485 0.95657 1.00825 0.97830 1.21072 0.95533 0.99292 0.99720 1.21743 1.01533 0.98347 0.94554 1.21335 0.92650 0.90703 0.92091 0.88583 1.22171 1.01700 0.97458 1.00539 1.47836 1.06236 1.26068 1.53903 1.21168 0.90365 0.80879 0.77649 1.90679 1.18182 1.73426 1.58921 1.21860 0.97948 0.96966 1.00998 1.21456 0.98467 0.94705 0.99505 1.21639 0.97206 0.97077 0.98786 1.19095 0.95562 0.91969 0.95101 1.21289 0.93069 1.08391 1.33048 0.92770 1.25043 0.95130 0.97921 0.96496 1.69977 1.13621 1.28311 1.41568 0.86614 0.81598 0.80321 0.79572 1.20724 1.21271 1.19918 1.21635 0.80723 1.00662 0.97852 0.92038 0.92391 0.92652 0.92333 0.92404 0.91957 0.91466 0.91541 0.90912 0.92680 0.91753 0.92225 0.89300 0.89233 0.91899 0.91895 0.93546 0.93535 0.96609 0.96615 0.93067 0.90714 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.10 37.16 0.34 -0.64 16 2 C -0.11 -0.89 2.49 -92.48 -0.23 -1.12 16 3 H 0.07 0.72 7.27 -51.93 -0.38 0.34 16 4 C -0.11 -0.81 4.38 -29.79 -0.13 -0.94 16 5 C -0.12 -0.97 5.51 -28.02 -0.15 -1.12 16 6 C -0.12 -0.94 5.06 -27.49 -0.14 -1.08 16 7 C 0.13 1.36 2.60 -67.01 -0.17 1.18 16 8 H 0.10 1.20 6.96 -51.93 -0.36 0.84 16 9 C -0.16 -1.41 9.33 37.16 0.35 -1.07 16 10 N -0.61 -6.67 1.84 -165.24 -0.30 -6.97 16 11 C 0.51 7.47 7.62 -10.98 -0.08 7.38 16 12 O -0.54 -10.02 15.26 5.56 0.08 -9.93 16 13 C -0.14 -1.94 4.20 -27.88 -0.12 -2.05 16 14 C -0.10 -1.91 4.50 -26.74 -0.12 -2.03 16 15 C -0.11 -2.30 5.15 -26.74 -0.14 -2.44 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 21 Si 0.89 22.07 29.54 -169.99 -5.02 17.04 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.12 0.96 4.45 -4.08 -0.02 0.95 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.38 7.36 -51.93 -0.38 0.00 16 30 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 33 H 0.07 0.44 7.17 -51.93 -0.37 0.07 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.09 7.30 -51.93 -0.38 0.71 16 39 H 0.09 1.12 7.08 -51.93 -0.37 0.75 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 47 H 0.07 0.53 7.82 -51.93 -0.41 0.12 16 48 H 0.08 0.67 6.22 -51.93 -0.32 0.35 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -33.01 367.66 -9.35 -42.36 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -9.22 Total: -4.50 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.17 Total: -16.50 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.43 Total: -34.02 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.01 -9.35 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588460880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.448 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds