Wall clock time and date at job start Tue Mar 31 2020 05:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.18300 * 2 1 4 4 C 1.47086 * 109.33010 * 240.43445 * 2 1 3 5 5 C 1.52566 * 114.32799 * 176.93948 * 4 2 1 6 6 C 1.50876 * 109.36172 * 85.00998 * 5 4 2 7 7 C 1.53601 * 109.95320 * 268.02709 * 6 5 4 8 8 H 1.09000 * 108.93825 * 280.02113 * 7 6 5 9 9 C 1.53002 * 108.75667 * 161.51306 * 7 6 5 10 10 N 1.47602 * 112.34282 * 40.83194 * 7 6 5 11 11 C 1.34777 * 118.64634 * 222.03986 * 10 7 6 12 12 O 1.21279 * 119.99633 * 359.73108 * 11 10 7 13 13 C 1.50701 * 120.00115 * 179.72709 * 11 10 7 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 90.00289 * 21 19 17 23 23 H 1.48505 * 109.47195 * 210.00171 * 21 19 17 24 24 H 1.48493 * 109.47449 * 330.00136 * 21 19 17 25 25 C 1.44589 * 122.71003 * 41.75725 * 10 7 6 26 26 H 1.09005 * 109.47514 * 300.43736 * 1 2 3 27 27 H 1.09002 * 109.47439 * 60.43650 * 1 2 3 28 28 H 1.08997 * 109.47427 * 180.43512 * 1 2 3 29 29 H 1.09002 * 108.51328 * 298.19338 * 4 2 1 30 30 H 1.09001 * 108.51688 * 55.83815 * 4 2 1 31 31 H 1.09005 * 109.49266 * 204.97540 * 5 4 2 32 32 H 1.08999 * 109.48979 * 325.04532 * 5 4 2 33 33 H 1.09000 * 109.36820 * 28.30303 * 6 5 4 34 34 H 1.08997 * 109.37014 * 148.05287 * 6 5 4 35 35 H 1.08999 * 109.47086 * 297.25145 * 9 7 6 36 36 H 1.09001 * 109.46849 * 57.24540 * 9 7 6 37 37 H 1.09002 * 109.47503 * 177.25264 * 9 7 6 38 38 H 1.09002 * 109.47060 * 60.00000 * 13 11 10 39 39 H 1.09001 * 109.46927 * 300.00196 * 13 11 10 40 40 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 41 41 H 1.09001 * 109.46832 * 300.00193 * 14 13 11 42 42 H 1.09002 * 109.47103 * 59.99753 * 15 14 13 43 43 H 1.08998 * 109.46862 * 300.00565 * 15 14 13 44 44 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 45 45 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 46 46 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.44849 * 29.57081 * 25 10 7 48 48 H 1.08997 * 109.44668 * 149.49417 * 25 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8882 1.0295 0.0000 4 6 2.0169 -0.6848 -1.2072 5 6 3.5349 -0.6862 -1.3600 6 6 4.1147 -1.8427 -0.5837 7 6 4.4800 -1.3893 0.8377 8 1 5.4364 -0.8673 0.8077 9 6 4.6192 -2.6258 1.7280 10 7 3.4624 -0.4921 1.4193 11 6 3.8738 0.5881 2.1125 12 8 5.0591 0.8038 2.2519 13 6 2.8609 1.5279 2.7142 14 6 3.5863 2.6619 3.4414 15 6 2.5581 3.6156 4.0528 16 6 3.2835 4.7493 4.7805 17 6 2.2706 5.6891 5.3822 18 1 1.2151 5.4968 5.2583 19 6 2.6915 6.7938 6.0917 20 7 3.9768 7.0276 6.2430 21 14 1.4361 7.9583 6.8381 22 1 1.1024 7.5106 8.2141 23 1 2.0017 9.3305 6.8876 24 1 0.2061 7.9597 6.0061 25 6 2.0425 -0.7210 1.2711 26 1 -0.3634 0.5206 0.8861 27 1 -0.3634 0.5070 -0.8939 28 1 -0.3634 -1.0276 0.0078 29 1 1.6706 -1.7181 -1.1824 30 1 1.5838 -0.1969 -2.0804 31 1 3.7943 -0.7890 -2.4137 32 1 3.9399 0.2497 -0.9751 33 1 3.3812 -2.6473 -0.5319 34 1 5.0115 -2.2030 -1.0877 35 1 3.6614 -3.1430 1.7839 36 1 5.3692 -3.2947 1.3059 37 1 4.9262 -2.3206 2.7284 38 1 2.2355 0.9835 3.4217 39 1 2.2370 1.9444 1.9233 40 1 4.2114 3.2062 2.7335 41 1 4.2105 2.2456 4.2321 42 1 1.9333 3.0711 4.7607 43 1 1.9335 4.0317 3.2623 44 1 3.9086 5.2939 4.0729 45 1 3.9077 4.3327 5.5710 46 1 4.2729 7.8051 6.7419 47 1 1.8547 -1.7910 1.1820 48 1 1.5191 -0.3325 2.1447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588460880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:33 Heat of formation + Delta-G solvation = -97.373737 kcal Electronic energy + Delta-G solvation = -22943.475694 eV Core-core repulsion = 19802.845047 eV Total energy + Delta-G solvation = -3140.630646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.62656 -39.02933 -36.74056 -35.74247 -34.93874 -34.40163 -31.64039 -30.85724 -27.57075 -27.25800 -27.05779 -24.63165 -23.50856 -22.01147 -21.44259 -21.26279 -19.54384 -18.45552 -18.05621 -17.38364 -16.94481 -16.49718 -16.07491 -15.51782 -15.38118 -15.19682 -14.73186 -14.50337 -14.27537 -14.10374 -13.67631 -13.61661 -13.40662 -13.33622 -13.09684 -12.94910 -12.83093 -12.68846 -12.44383 -12.33317 -12.21476 -12.18108 -12.10859 -11.73008 -11.52282 -11.40052 -11.35313 -11.29875 -11.19479 -11.09705 -10.64841 -10.55306 -9.58908 -8.18694 -6.31125 1.40296 1.42873 1.53970 1.62534 2.02288 2.42066 3.13932 3.50088 3.78809 3.84907 3.95405 3.99199 4.01593 4.05513 4.10894 4.28307 4.47501 4.49309 4.55407 4.59924 4.66186 4.71311 4.74650 4.78418 4.82359 4.85895 4.95133 4.97436 5.00215 5.05891 5.15209 5.16564 5.23439 5.27516 5.32091 5.34932 5.37180 5.39692 5.48284 5.54977 5.56040 5.76665 5.76916 5.87221 6.24879 6.42164 6.87129 7.21942 7.38512 8.93692 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.003171 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.201889 B = 8827.505985 C = 9490.994003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.052 0.948 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.115 4.115 7 C 0.129 3.871 8 H 0.062 0.938 9 C -0.154 4.154 10 N -0.594 5.594 11 C 0.505 3.495 12 O -0.590 6.590 13 C -0.127 4.127 14 C -0.094 4.094 15 C -0.094 4.094 16 C 0.019 3.981 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.258 1.258 25 C 0.107 3.893 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.061 0.939 43 H 0.060 0.940 44 H -0.017 1.017 45 H -0.016 1.016 46 H 0.263 0.737 47 H 0.099 0.901 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 -23.476 -16.761 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.071 0.929 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.153 4.153 7 C 0.027 3.973 8 H 0.080 0.920 9 C -0.212 4.212 10 N -0.325 5.325 11 C 0.294 3.706 12 O -0.471 6.471 13 C -0.166 4.166 14 C -0.133 4.133 15 C -0.131 4.131 16 C -0.018 4.018 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.182 1.182 25 C -0.016 4.016 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.002 0.998 45 H 0.003 0.997 46 H 0.072 0.928 47 H 0.117 0.883 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.342 -23.303 -16.640 29.560 hybrid contribution 0.310 1.159 0.622 1.351 sum -7.032 -22.144 -16.017 28.220 Atomic orbital electron populations 1.21779 0.92917 1.02900 1.02394 1.20834 0.97102 0.99453 0.95493 0.92924 1.20481 0.94707 1.01877 0.97609 1.21078 0.96371 0.97981 1.00258 1.21711 1.02611 0.98518 0.92419 1.21455 0.91132 0.90588 0.94154 0.91971 1.22118 1.03218 0.97013 0.98841 1.47863 1.07804 1.24705 1.52176 1.21264 0.89570 0.81792 0.77927 1.90662 1.20205 1.74920 1.61267 1.21727 0.97610 0.95559 1.01724 1.21241 0.97709 0.95630 0.98683 1.21433 0.97248 0.95556 0.98902 1.19050 0.95159 0.93599 0.93984 1.21749 0.93907 1.09018 1.33282 0.91512 1.26110 0.97396 1.00018 0.96915 1.70138 1.16139 1.29160 1.42442 0.85366 0.78891 0.77385 0.78905 1.19656 1.20947 1.18235 1.21941 0.78713 1.02381 0.98540 0.92138 0.92375 0.91101 0.90456 0.92152 0.90939 0.94618 0.89318 0.89902 0.90723 0.90113 0.94693 0.86616 0.87121 0.94168 0.93955 0.91992 0.92168 0.99825 0.99747 0.92849 0.88271 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.10 71.98 0.66 -0.79 16 2 C -0.11 -1.46 2.49 -12.00 -0.03 -1.49 16 3 H 0.05 0.95 7.27 -2.38 -0.02 0.93 16 4 C -0.11 -1.30 4.38 28.61 0.13 -1.17 16 5 C -0.12 -1.77 5.51 29.76 0.16 -1.60 16 6 C -0.11 -1.49 5.06 30.11 0.15 -1.34 16 7 C 0.13 2.52 2.60 44.98 0.12 2.64 16 8 H 0.06 1.65 6.96 -2.39 -0.02 1.63 16 9 C -0.15 -2.48 9.33 71.98 0.67 -1.81 16 10 N -0.59 -12.55 1.84 -795.09 -1.46 -14.01 16 11 C 0.50 15.06 7.62 87.66 0.67 15.73 16 12 O -0.59 -23.50 15.26 -3.03 -0.05 -23.55 16 13 C -0.13 -3.47 4.20 29.85 0.13 -3.35 16 14 C -0.09 -3.62 4.50 30.59 0.14 -3.48 16 15 C -0.09 -3.97 5.15 30.59 0.16 -3.81 16 16 C 0.02 1.08 4.97 29.85 0.15 1.23 16 17 C -0.54 -31.86 9.11 25.60 0.23 -31.63 16 18 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 19 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 20 N -0.94 -59.79 13.29 21.45 0.28 -59.51 16 21 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 C 0.11 1.49 4.45 87.37 0.39 1.88 16 26 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.67 7.36 -2.39 -0.02 0.65 16 30 H 0.06 0.71 8.11 -2.39 -0.02 0.69 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.03 0.76 7.48 -2.39 -0.02 0.74 16 33 H 0.09 0.81 7.17 -2.39 -0.02 0.79 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.91 7.90 -2.39 -0.02 0.89 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.12 2.57 7.30 -2.39 -0.02 2.55 16 39 H 0.11 2.58 7.08 -2.39 -0.02 2.57 16 40 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 41 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 46 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 47 H 0.10 0.96 7.82 -2.39 -0.02 0.94 16 48 H 0.09 1.16 6.22 -2.39 -0.01 1.14 16 Total: -1.00 -75.50 367.66 5.86 -69.64 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.88 Total: 9.18 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.18 Total: -28.97 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.18 Total: -73.52 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.50 5.86 -69.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588460880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.735 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds