Wall clock time and date at job start Tue Mar 31 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 108.46311 * 2 1 4 4 C 1.52521 * 108.52244 * 242.28699 * 2 1 3 5 5 C 1.50128 * 105.41791 * 149.51027 * 4 2 1 6 6 C 1.54840 * 110.82136 * 97.67877 * 5 4 2 7 7 C 1.54908 * 110.13815 * 321.13738 * 6 5 4 8 8 H 1.08997 * 107.99613 * 80.23306 * 7 6 5 9 9 C 1.52999 * 108.15624 * 196.91814 * 7 6 5 10 10 N 1.43428 * 116.08145 * 318.63747 * 7 6 5 11 11 C 1.34778 * 120.53938 * 271.54659 * 10 7 6 12 12 O 1.21282 * 119.99573 * 355.50695 * 11 10 7 13 13 C 1.50696 * 120.00600 * 175.50914 * 11 10 7 14 14 C 1.52999 * 109.47482 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47233 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47233 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47111 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00051 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00204 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99701 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00246 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47123 * 60.00234 * 21 19 17 23 23 H 1.48504 * 109.46823 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47015 * 299.99741 * 21 19 17 25 25 C 1.46760 * 108.33584 * 117.72304 * 2 1 3 26 26 H 1.08998 * 109.47296 * 177.71521 * 1 2 3 27 27 H 1.09002 * 109.47230 * 297.71588 * 1 2 3 28 28 H 1.09005 * 109.46982 * 57.70919 * 1 2 3 29 29 H 1.08997 * 110.25131 * 30.53355 * 4 2 1 30 30 H 1.09002 * 110.37136 * 268.53770 * 4 2 1 31 31 H 1.09004 * 109.20584 * 337.33205 * 5 4 2 32 32 H 1.09000 * 109.17230 * 218.00533 * 5 4 2 33 33 H 1.08995 * 109.35950 * 200.93149 * 6 5 4 34 34 H 1.09001 * 109.24569 * 81.26886 * 6 5 4 35 35 H 1.08998 * 109.47144 * 169.52960 * 9 7 6 36 36 H 1.09000 * 109.47265 * 289.53331 * 9 7 6 37 37 H 1.09001 * 109.47026 * 49.53340 * 9 7 6 38 38 H 1.09000 * 109.46843 * 59.99453 * 13 11 10 39 39 H 1.09001 * 109.46850 * 299.99916 * 13 11 10 40 40 H 1.08994 * 109.47199 * 59.99861 * 14 13 11 41 41 H 1.09001 * 109.46911 * 299.99757 * 14 13 11 42 42 H 1.09000 * 109.47180 * 59.99278 * 15 14 13 43 43 H 1.09004 * 109.46645 * 300.00112 * 15 14 13 44 44 H 1.09001 * 109.46911 * 299.99497 * 16 15 14 45 45 H 1.08994 * 109.47199 * 59.99600 * 16 15 14 46 46 H 0.96999 * 120.00310 * 180.02562 * 20 19 17 47 47 H 1.08992 * 109.95519 * 60.23001 * 25 2 1 48 48 H 1.09006 * 110.00382 * 299.06946 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8752 1.0340 0.0000 4 6 2.0145 -0.6725 -1.2803 5 6 3.3238 -0.0142 -1.6061 6 6 4.5111 -0.8714 -1.1029 7 6 4.1717 -1.4972 0.2729 8 1 3.5481 -2.3741 0.0994 9 6 5.4774 -1.9649 0.9190 10 7 3.4931 -0.6430 1.2040 11 6 4.1916 0.1473 2.0431 12 8 5.4022 0.0808 2.0719 13 6 3.4684 1.1136 2.9455 14 6 4.4867 1.8837 3.7886 15 6 3.7524 2.8643 4.7053 16 6 4.7706 3.6340 5.5489 17 6 4.0474 4.6002 6.4512 18 1 2.9693 4.6597 6.4253 19 6 4.7619 5.4083 7.3100 20 7 6.0747 5.3355 7.3419 21 14 3.8655 6.6066 8.4280 22 1 2.9469 5.8568 9.3220 23 1 4.8538 7.3526 9.2478 24 1 3.0833 7.5624 7.6034 25 6 1.9917 -0.6481 1.2332 26 1 -0.3634 -1.0268 -0.0410 27 1 -0.3634 0.4780 0.9098 28 1 -0.3633 0.5490 -0.8688 29 1 1.2992 -0.5091 -2.0863 30 1 2.1598 -1.7403 -1.1164 31 1 3.3611 0.9653 -1.1292 32 1 3.4032 0.1097 -2.6861 33 1 5.3954 -0.2418 -1.0053 34 1 4.7107 -1.6660 -1.8219 35 1 5.2915 -2.2371 1.9580 36 1 5.8600 -2.8311 0.3793 37 1 6.2109 -1.1595 0.8801 38 1 2.7947 0.5629 3.6020 39 1 2.8936 1.8149 2.3406 40 1 5.1600 2.4344 3.1318 41 1 5.0619 1.1827 4.3935 42 1 3.0793 2.3132 5.3620 43 1 3.1769 3.5653 4.1007 44 1 5.3457 2.9327 6.1535 45 1 5.4440 4.1849 4.8924 46 1 6.5774 5.9037 7.9463 47 1 1.6258 -1.6739 1.2737 48 1 1.6366 -0.0931 2.1016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588460882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:40 Heat of formation + Delta-G solvation = -62.394713 kcal Electronic energy + Delta-G solvation = -22989.226479 eV Core-core repulsion = 19850.112637 eV Total energy + Delta-G solvation = -3139.113842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82459 -38.15230 -35.33262 -34.44556 -33.86186 -32.53263 -30.51631 -29.24056 -26.56841 -26.41139 -25.57142 -23.62110 -22.23591 -21.19401 -20.38171 -19.90698 -18.55046 -16.77087 -16.34592 -16.02045 -15.87536 -15.15954 -14.99200 -14.55887 -14.44622 -14.14192 -13.76116 -13.25858 -12.96022 -12.77099 -12.63781 -12.50831 -12.47704 -12.14423 -11.91501 -11.71751 -11.61862 -11.54285 -11.34064 -11.06835 -10.94307 -10.75808 -10.69718 -10.55222 -10.49605 -10.47293 -10.34761 -9.57766 -9.31913 -9.06206 -8.91524 -8.67134 -8.28118 -5.92987 -3.95563 2.77006 2.91503 3.36631 3.40918 3.43165 4.28718 4.38687 4.50948 4.55427 4.71208 4.74002 4.88127 4.93018 5.08038 5.24343 5.25930 5.31136 5.38173 5.38889 5.41571 5.42103 5.44792 5.51169 5.63496 5.68786 5.78906 5.81104 5.90923 5.92595 5.96992 6.01747 6.09184 6.11034 6.18088 6.32806 6.36396 6.58849 6.74802 6.87985 7.05426 7.23057 7.40548 7.76316 7.93078 8.08636 8.37258 8.50393 9.12014 9.67878 11.18339 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024597 B = 0.003174 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.090582 B = 8818.216473 C = 9545.905997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 H 0.076 0.924 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.130 4.130 7 C 0.146 3.854 8 H 0.068 0.932 9 C -0.157 4.157 10 N -0.612 5.612 11 C 0.516 3.484 12 O -0.527 6.527 13 C -0.139 4.139 14 C -0.102 4.102 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.053 0.947 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.118 3.882 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.016 0.984 45 H 0.015 0.985 46 H 0.260 0.740 47 H 0.074 0.926 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 -15.968 -19.158 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.169 4.169 7 C 0.041 3.959 8 H 0.086 0.914 9 C -0.214 4.214 10 N -0.347 5.347 11 C 0.305 3.695 12 O -0.403 6.403 13 C -0.179 4.179 14 C -0.140 4.140 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.004 4.004 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.657 -15.926 -19.030 26.628 hybrid contribution -0.568 0.690 0.562 1.056 sum -10.225 -15.236 -18.468 26.034 Atomic orbital electron populations 1.21951 0.94717 1.01945 1.02260 1.20646 0.96273 1.01209 0.95412 0.90577 1.21121 0.96980 1.00107 0.96677 1.21555 0.94402 0.99459 1.00413 1.22697 0.98513 0.99777 0.95874 1.20585 0.94527 0.91664 0.89141 0.91398 1.22411 0.97730 1.01346 0.99907 1.48223 1.06497 1.43443 1.36501 1.21010 0.87922 0.80406 0.80130 1.90672 1.14207 1.67481 1.67977 1.21838 1.00278 0.97558 0.98206 1.21443 0.96859 0.98050 0.97678 1.21645 0.99230 0.96714 0.97159 1.19085 0.93889 0.94546 0.94151 1.21253 0.93095 1.20590 1.20970 0.92830 1.25039 0.94831 0.97361 0.97319 1.69965 1.05485 1.39825 1.38217 0.86675 0.79394 0.81255 0.80754 1.20289 1.21324 1.20286 1.21302 0.78721 1.01752 0.98605 0.92567 0.92351 0.92382 0.91428 0.91324 0.91846 0.92527 0.91498 0.91227 0.92760 0.93922 0.89287 0.89456 0.89440 0.91897 0.91865 0.93556 0.93575 0.96609 0.96630 0.92999 0.90753 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.86 37.16 0.33 -0.55 16 2 C -0.12 -0.84 2.23 -93.85 -0.21 -1.04 16 3 H 0.08 0.66 6.93 -51.93 -0.36 0.30 16 4 C -0.11 -0.77 5.18 -28.40 -0.15 -0.92 16 5 C -0.12 -1.01 5.65 -27.19 -0.15 -1.16 16 6 C -0.13 -1.20 5.72 -24.75 -0.14 -1.34 16 7 C 0.15 1.48 2.21 -68.55 -0.15 1.33 16 8 H 0.07 0.59 6.87 -51.93 -0.36 0.23 16 9 C -0.16 -1.88 7.68 37.16 0.29 -1.60 16 10 N -0.61 -6.67 2.49 -167.56 -0.42 -7.09 16 11 C 0.52 7.37 7.31 -10.99 -0.08 7.29 16 12 O -0.53 -9.37 12.38 5.56 0.07 -9.30 16 13 C -0.14 -1.92 4.14 -27.89 -0.12 -2.03 16 14 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 15 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 17 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 18 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.12 0.93 5.05 -4.97 -0.03 0.90 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.07 0.41 7.80 -51.93 -0.41 0.01 16 30 H 0.07 0.46 6.29 -51.93 -0.33 0.13 16 31 H 0.06 0.63 6.83 -51.93 -0.35 0.28 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.74 7.82 -51.93 -0.41 0.34 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.73 7.62 -51.93 -0.40 0.33 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 1.30 5.94 -51.93 -0.31 0.99 16 38 H 0.09 1.05 7.45 -51.93 -0.39 0.66 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 48 H 0.09 0.69 6.11 -51.93 -0.32 0.38 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -32.57 361.79 -9.47 -42.03 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -9.07 Total: -4.02 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.22 Total: -17.07 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.32 Total: -34.12 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.57 -9.47 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588460882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.361 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds