Wall clock time and date at job start Tue Mar 31 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47509 * 2 1 4 4 C 1.53005 * 109.47543 * 239.99896 * 2 1 3 5 5 C 1.52993 * 109.47194 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47443 * 60.00259 * 5 4 2 7 7 C 1.52997 * 109.47061 * 299.99750 * 6 5 4 8 8 H 1.08995 * 109.47281 * 300.00302 * 7 6 5 9 9 C 1.52995 * 109.47456 * 179.97438 * 7 6 5 10 10 C 1.53001 * 109.47163 * 120.00113 * 2 1 3 11 11 H 1.09002 * 109.47224 * 59.99862 * 10 2 1 12 12 N 1.46507 * 109.47126 * 300.00146 * 10 2 1 13 13 C 1.34776 * 120.00105 * 84.99431 * 12 10 2 14 14 O 1.21282 * 119.99940 * 0.02562 * 13 12 10 15 15 C 1.50698 * 120.00035 * 179.97438 * 13 12 10 16 16 C 1.52996 * 109.47188 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47131 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99933 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99912 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47017 * 89.99937 * 23 21 19 25 25 H 1.48507 * 109.47241 * 209.99826 * 23 21 19 26 26 H 1.48500 * 109.47209 * 329.99791 * 23 21 19 27 27 H 1.09000 * 109.47130 * 300.00106 * 1 2 3 28 28 H 1.09002 * 109.47054 * 59.99806 * 1 2 3 29 29 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46703 * 60.00083 * 4 2 1 31 31 H 1.09002 * 109.46925 * 300.00187 * 4 2 1 32 32 H 1.08994 * 109.47578 * 299.99932 * 5 4 2 33 33 H 1.09000 * 109.46781 * 179.97438 * 5 4 2 34 34 H 1.09001 * 109.47269 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47224 * 59.99606 * 6 5 4 36 36 H 1.09002 * 109.47259 * 300.00120 * 9 7 6 37 37 H 1.09001 * 109.46839 * 59.99790 * 9 7 6 38 38 H 1.09000 * 109.47313 * 179.97438 * 9 7 6 39 39 H 0.96995 * 119.99791 * 265.00538 * 12 10 2 40 40 H 1.09001 * 109.46665 * 60.00498 * 15 13 12 41 41 H 1.08992 * 109.47413 * 300.00829 * 15 13 12 42 42 H 1.09001 * 109.46993 * 60.00038 * 16 15 13 43 43 H 1.09004 * 109.47298 * 300.00453 * 16 15 13 44 44 H 1.09001 * 109.46832 * 60.00325 * 17 16 15 45 45 H 1.08993 * 109.47194 * 299.99846 * 17 16 15 46 46 H 1.09001 * 109.46801 * 300.00272 * 18 17 16 47 47 H 1.09001 * 109.46998 * 59.99868 * 18 17 16 48 48 H 0.97007 * 120.00011 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7222 1.2496 8 1 3.9331 0.3053 1.2499 9 6 4.0784 -1.4441 2.4989 10 6 2.0399 -0.7213 1.2492 11 1 1.6766 -1.7490 1.2492 12 7 1.5515 -0.0307 2.4455 13 6 0.3295 -0.3165 2.9369 14 8 -0.3656 -1.1457 2.3891 15 6 -0.1726 0.3935 4.1677 16 6 -1.5749 -0.1122 4.5117 17 6 -2.0850 0.6090 5.7609 18 6 -3.4872 0.1028 6.1054 19 6 -3.9893 0.8128 7.3362 20 1 -3.3703 1.5515 7.8237 21 6 -5.2392 0.5200 7.8392 22 7 -5.6775 1.1400 8.9130 23 14 -6.3099 -0.7571 6.9955 24 1 -6.0353 -2.0955 7.5772 25 1 -7.7408 -0.4142 7.1963 26 1 -6.0048 -0.7768 5.5423 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6767 -0.2074 -2.1392 31 1 1.6767 -1.7490 -1.2492 32 1 3.9337 0.3057 -1.2486 33 1 3.9333 -1.2360 -2.1386 34 1 5.1695 -1.4442 0.0004 35 1 3.7158 -2.4710 0.0002 36 1 3.7144 -2.4715 2.4985 37 1 5.1684 -1.4449 2.4993 38 1 3.7154 -0.9300 3.3888 39 1 2.1076 0.6323 2.8837 40 1 -0.2090 1.4664 3.9787 41 1 0.5000 0.1942 5.0019 42 1 -1.5381 -1.1851 4.7008 43 1 -2.2478 0.0868 3.6775 44 1 -2.1219 1.6818 5.5714 45 1 -1.4123 0.4104 6.5952 46 1 -4.1601 0.3011 5.2711 47 1 -3.4498 -0.9699 6.2950 48 1 -6.5568 0.9338 9.2672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588630604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:29 Heat of formation + Delta-G solvation = -91.882394 kcal Electronic energy + Delta-G solvation = -22535.785694 eV Core-core repulsion = 19395.393170 eV Total energy + Delta-G solvation = -3140.392524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57842 -38.52651 -35.04379 -34.31741 -33.72741 -32.56298 -31.07519 -29.86172 -26.91831 -26.52021 -25.51415 -22.60431 -21.54495 -21.05769 -20.44830 -19.99386 -19.80764 -16.83580 -16.65941 -16.38352 -15.94655 -15.18492 -14.72194 -14.52564 -14.36643 -14.16165 -13.75217 -13.59539 -13.10596 -12.74747 -12.66961 -12.59645 -12.46867 -12.15902 -12.04577 -12.00842 -11.72128 -11.48550 -11.31335 -11.07941 -11.07035 -10.80222 -10.70553 -10.70196 -10.50455 -10.43051 -9.88431 -9.75330 -9.61953 -9.35448 -9.09675 -9.00945 -8.47715 -5.98952 -3.96266 2.75440 3.14274 3.36691 3.43573 3.49890 4.21918 4.34969 4.46537 4.51680 4.70216 4.78277 4.88764 5.02923 5.05669 5.07851 5.14774 5.27984 5.32780 5.34470 5.36926 5.37463 5.53711 5.56153 5.60009 5.70249 5.72042 5.80768 5.83365 5.86508 5.88043 5.96085 6.01949 6.06742 6.14973 6.19547 6.34416 6.43721 6.49896 6.71618 6.85721 7.01864 7.40608 7.48949 7.53427 7.86724 8.31567 8.60194 9.06128 9.64555 11.14582 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.002790 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.765432 B =10032.443365 C =10430.251533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.111 4.111 7 C -0.098 4.098 8 H 0.074 0.926 9 C -0.148 4.148 10 C 0.155 3.845 11 H 0.086 0.914 12 N -0.732 5.732 13 C 0.512 3.488 14 O -0.532 6.532 15 C -0.140 4.140 16 C -0.105 4.105 17 C -0.103 4.103 18 C -0.015 4.015 19 C -0.519 4.519 20 H 0.071 0.929 21 C 0.064 3.936 22 N -0.906 5.906 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.264 1.264 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.397 0.603 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.091 -2.836 -20.267 30.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.149 4.149 7 C -0.117 4.117 8 H 0.092 0.908 9 C -0.205 4.205 10 C 0.050 3.950 11 H 0.104 0.896 12 N -0.384 5.384 13 C 0.300 3.700 14 O -0.408 6.408 15 C -0.180 4.180 16 C -0.143 4.143 17 C -0.140 4.140 18 C -0.053 4.053 19 C -0.557 4.557 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.546 5.546 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.189 1.189 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 22.413 -3.437 -20.533 30.590 hybrid contribution -0.350 -0.225 -0.069 0.422 sum 22.062 -3.663 -20.601 30.407 Atomic orbital electron populations 1.21865 0.94101 1.02733 1.01019 1.21531 0.96702 0.99405 0.94294 0.91435 1.21582 0.95127 1.01017 0.97395 1.21568 0.95856 1.00737 0.97721 1.21557 1.00328 0.99538 0.93492 1.21386 0.94211 1.00401 0.95705 0.90798 1.21827 1.00704 1.00784 0.97180 1.21001 0.92542 0.97358 0.84117 0.89559 1.46139 1.18309 1.44059 1.29898 1.20958 0.80713 0.82670 0.85647 1.90701 1.55912 1.33666 1.60513 1.21779 1.00009 1.01041 0.95195 1.21462 0.92869 1.00669 0.99275 1.21476 0.98608 0.99037 0.94906 1.19575 0.92566 0.96171 0.96952 1.21191 1.01563 1.23001 1.09925 0.91128 1.25044 0.97789 0.96083 0.94725 1.69924 1.19259 1.42787 1.22611 0.86772 0.79522 0.82075 0.80915 1.20325 1.21476 1.18889 0.92501 0.93736 0.91853 0.91799 0.91753 0.91976 0.91895 0.91612 0.91675 0.92540 0.92577 0.92328 0.76885 0.89205 0.89183 0.91858 0.91866 0.92904 0.92930 0.96646 0.97084 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.72 37.15 0.29 -1.31 16 2 C -0.10 -0.89 2.43 -90.62 -0.22 -1.11 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 5 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 6 C -0.11 -0.68 5.20 -26.73 -0.14 -0.82 16 7 C -0.10 -0.65 2.30 -90.65 -0.21 -0.86 16 8 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 9 C -0.15 -0.99 9.03 37.16 0.34 -0.66 16 10 C 0.15 1.39 1.63 -67.95 -0.11 1.28 16 11 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 12 N -0.73 -6.83 4.27 -53.82 -0.23 -7.06 16 13 C 0.51 6.59 6.18 -10.99 -0.07 6.52 16 14 O -0.53 -8.80 13.11 5.56 0.07 -8.73 16 15 C -0.14 -1.77 5.70 -27.89 -0.16 -1.93 16 16 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 17 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 18 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 19 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 20 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 21 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 22 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 23 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 27 H 0.06 0.75 5.78 -51.93 -0.30 0.45 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.40 7.45 -51.93 -0.39 0.02 16 39 H 0.40 2.72 8.39 -40.82 -0.34 2.38 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 43 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 47 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -32.93 365.83 -9.27 -42.20 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -9.35 Total: -2.93 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -1.38 Total: -19.05 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.54 Total: -34.88 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.93 -9.27 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588630604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.680 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds