Wall clock time and date at job start Tue Mar 31 2020 05:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46380 * 2 1 4 4 C 1.52997 * 109.46978 * 119.99590 * 2 1 3 5 5 C 1.53006 * 109.47164 * 60.00126 * 4 2 1 6 6 C 1.52999 * 109.46626 * 59.99702 * 5 4 2 7 7 C 1.52997 * 109.47592 * 300.00035 * 6 5 4 8 8 H 1.09000 * 109.47140 * 300.00346 * 7 6 5 9 9 C 1.53002 * 109.47092 * 180.02562 * 7 6 5 10 10 C 1.52996 * 109.47165 * 60.00300 * 7 6 5 11 11 N 1.46500 * 109.47249 * 180.02562 * 10 7 6 12 12 C 1.34782 * 119.99474 * 274.99290 * 11 10 7 13 13 O 1.21274 * 120.00061 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99489 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.46944 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47263 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47392 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47405 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99601 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99972 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99909 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00316 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47350 * 89.99341 * 22 20 18 24 24 H 1.48499 * 109.47123 * 209.99903 * 22 20 18 25 25 H 1.48504 * 109.46881 * 329.99486 * 22 20 18 26 26 H 1.09001 * 109.47600 * 300.00451 * 1 2 3 27 27 H 1.09004 * 109.47006 * 60.00229 * 1 2 3 28 28 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46922 * 300.00374 * 4 2 1 30 30 H 1.09000 * 109.47140 * 180.02562 * 4 2 1 31 31 H 1.08993 * 109.46955 * 180.02562 * 5 4 2 32 32 H 1.09000 * 109.47050 * 300.00004 * 5 4 2 33 33 H 1.09000 * 109.47160 * 60.00369 * 6 5 4 34 34 H 1.09002 * 109.46719 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47312 * 300.00120 * 9 7 6 36 36 H 1.09002 * 109.47067 * 60.00147 * 9 7 6 37 37 H 1.09004 * 109.46930 * 180.02562 * 9 7 6 38 38 H 1.08996 * 109.47134 * 59.99508 * 10 7 6 39 39 H 0.96992 * 120.00233 * 95.00296 * 11 10 7 40 40 H 1.09006 * 109.47561 * 300.00415 * 14 12 11 41 41 H 1.08997 * 109.47517 * 60.00469 * 14 12 11 42 42 H 1.09000 * 109.47367 * 299.99829 * 15 14 12 43 43 H 1.08998 * 109.47577 * 60.00251 * 15 14 12 44 44 H 1.09000 * 109.47741 * 300.00211 * 16 15 14 45 45 H 1.09006 * 109.47329 * 59.99977 * 16 15 14 46 46 H 1.09000 * 109.47607 * 300.00105 * 17 16 15 47 47 H 1.08998 * 109.47208 * 60.00449 * 17 16 15 48 48 H 0.97003 * 120.00324 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2494 6 6 2.0400 -2.8849 0.0001 7 6 1.5301 -2.1638 -1.2492 8 1 0.4401 -2.1638 -1.2492 9 6 2.0396 -2.8854 -2.4983 10 6 2.0400 -0.7213 -1.2492 11 7 1.5512 -0.0306 -2.4452 12 6 2.2278 -0.1332 -3.6063 13 8 3.2408 -0.7976 -3.6613 14 6 1.7247 0.5769 -4.8367 15 6 2.6681 0.2975 -6.0083 16 6 2.1570 1.0178 -7.2576 17 6 3.1008 0.7390 -8.4291 18 6 2.5977 1.4490 -9.6595 19 1 1.6954 2.0404 -9.6106 20 6 3.2901 1.3445 -10.8472 21 7 2.8508 1.9637 -11.9211 22 14 4.8513 0.3222 -10.9316 23 1 4.5084 -1.0760 -11.2956 24 1 5.7612 0.8920 -11.9575 25 1 5.5254 0.3381 -9.6084 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6766 -0.2073 2.1392 30 1 3.1300 -0.7208 1.2495 31 1 1.8929 -2.6773 2.1396 32 1 0.4400 -2.1637 1.2493 33 1 3.1300 -2.8849 0.0002 34 1 1.6763 -3.9125 -0.0001 35 1 3.1296 -2.8858 -2.4985 36 1 1.6760 -3.9130 -2.4981 37 1 1.6767 -2.3713 -3.3884 38 1 3.1300 -0.7213 -1.2491 39 1 0.7409 0.5007 -2.4013 40 1 0.7255 0.2164 -5.0813 41 1 1.6876 1.6496 -4.6475 42 1 3.6674 0.6578 -5.7640 43 1 2.7048 -0.7753 -6.1975 44 1 1.1578 0.6573 -7.5018 45 1 2.1200 2.0908 -7.0688 46 1 4.0999 1.0999 -8.1848 47 1 3.1382 -0.3338 -8.6181 48 1 3.3376 1.8899 -12.7569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588630605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:04 Heat of formation + Delta-G solvation = -86.855587 kcal Electronic energy + Delta-G solvation = -22597.449427 eV Core-core repulsion = 19457.274882 eV Total energy + Delta-G solvation = -3140.174545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72169 -38.68679 -35.05134 -34.27100 -33.44372 -32.55193 -30.93028 -29.81998 -27.15892 -26.67867 -25.54823 -22.77027 -21.88908 -21.29210 -20.17603 -19.99278 -19.06673 -16.88013 -16.64976 -16.40686 -15.90747 -15.32934 -14.84335 -14.77326 -14.28702 -14.12928 -13.79813 -13.55107 -13.23854 -12.87709 -12.62310 -12.52871 -12.26545 -12.19495 -12.02347 -11.97777 -11.72422 -11.66630 -11.35522 -11.13766 -11.07170 -10.70710 -10.68203 -10.50841 -10.47329 -10.42682 -9.88914 -9.74655 -9.62153 -9.35595 -9.09563 -9.01476 -8.47622 -5.98871 -3.96195 2.75264 3.14853 3.36767 3.43639 3.49965 4.25737 4.32116 4.47120 4.51749 4.69070 4.80806 4.87513 4.93271 4.98239 5.12988 5.16205 5.27983 5.28769 5.33826 5.36229 5.37047 5.47522 5.55695 5.60923 5.69526 5.72144 5.77574 5.82145 5.85355 5.89519 5.94813 6.04982 6.07060 6.17945 6.20228 6.35089 6.43951 6.49933 6.71702 6.85841 7.01962 7.40712 7.48798 7.53525 7.86800 8.31405 8.60280 9.06213 9.64630 11.14664 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037743 B = 0.002757 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.683287 B =10152.248355 C =10544.939577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.101 4.101 8 H 0.071 0.929 9 C -0.140 4.140 10 C 0.154 3.846 11 N -0.733 5.733 12 C 0.512 3.488 13 O -0.532 6.532 14 C -0.141 4.141 15 C -0.105 4.105 16 C -0.103 4.103 17 C -0.015 4.015 18 C -0.519 4.519 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.907 5.907 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.264 1.264 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.397 0.603 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 -6.613 29.872 31.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.151 4.151 7 C -0.120 4.120 8 H 0.089 0.911 9 C -0.198 4.198 10 C 0.050 3.950 11 N -0.386 5.386 12 C 0.299 3.701 13 O -0.408 6.408 14 C -0.180 4.180 15 C -0.143 4.143 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.557 4.557 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.546 5.546 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.189 1.189 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.853 -7.056 29.625 30.838 hybrid contribution 0.333 -0.198 -0.201 0.436 sum -4.520 -7.254 29.424 30.641 Atomic orbital electron populations 1.21969 0.94964 1.02449 1.01628 1.21367 0.96397 0.99663 0.94380 0.90647 1.21522 1.00871 0.95682 0.96863 1.21606 1.01037 0.95485 0.97904 1.21575 1.01060 0.98853 0.93601 1.21558 1.00460 0.94567 0.95439 0.91069 1.21875 1.02049 0.98824 0.97027 1.20959 0.99644 0.90889 0.83540 1.46222 1.29596 1.52936 1.09891 1.20975 0.83755 0.80743 0.84577 1.90698 1.24828 1.40324 1.84933 1.21783 1.01778 1.01218 0.93270 1.21462 0.98165 1.01494 0.93152 1.21477 0.99712 0.99057 0.93785 1.19574 0.95299 0.96406 0.93990 1.21190 1.11275 1.30426 0.92783 0.91127 1.25044 0.97546 0.95393 0.95655 1.69923 1.40097 1.43844 1.00726 0.86771 0.83796 0.80629 0.78094 1.20322 1.21474 1.18888 0.92422 0.92771 0.91671 0.91615 0.91706 0.92003 0.91639 0.91785 0.91835 0.91884 0.93753 0.92524 0.89610 0.76789 0.89203 0.89173 0.91844 0.91861 0.92926 0.92901 0.96642 0.97082 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.33 37.16 0.31 -0.55 16 2 C -0.10 -0.66 2.88 -90.62 -0.26 -0.92 16 3 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -0.67 5.45 -26.73 -0.15 -0.82 16 5 C -0.12 -0.74 5.65 -26.73 -0.15 -0.89 16 6 C -0.11 -0.85 5.20 -26.73 -0.14 -0.98 16 7 C -0.10 -0.89 2.16 -90.62 -0.20 -1.09 16 8 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 9 C -0.14 -1.61 7.72 37.16 0.29 -1.32 16 10 C 0.15 1.40 1.88 -67.93 -0.13 1.27 16 11 N -0.73 -6.99 4.89 -53.81 -0.26 -7.26 16 12 C 0.51 6.66 6.19 -10.98 -0.07 6.60 16 13 O -0.53 -8.86 13.11 5.56 0.07 -8.79 16 14 C -0.14 -1.79 5.70 -27.89 -0.16 -1.95 16 15 C -0.10 -1.78 4.50 -26.73 -0.12 -1.90 16 16 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 17 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 18 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 19 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 22 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.28 6.50 -51.93 -0.34 -0.06 16 28 H 0.06 0.38 4.81 -51.93 -0.25 0.13 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.75 5.77 -51.93 -0.30 0.45 16 38 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 39 H 0.40 2.84 6.86 -40.82 -0.28 2.56 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 43 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 47 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -32.97 357.05 -9.04 -42.02 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.89 Total: -2.46 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -1.45 Total: -18.94 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.51 Total: -35.09 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.97 -9.04 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588630605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.838 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds