Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.45871 * 2 1 4 4 C 1.53039 * 109.45888 * 240.03335 * 2 1 3 5 5 C 1.53191 * 109.31416 * 178.62533 * 4 2 1 6 6 N 1.46928 * 108.77343 * 54.63452 * 5 4 2 7 7 C 1.34783 * 120.62874 * 126.37163 * 6 5 4 8 8 O 1.21274 * 119.99655 * 180.02562 * 7 6 5 9 9 C 1.50698 * 119.99922 * 0.02562 * 7 6 5 10 10 C 1.52999 * 109.47009 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47521 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47358 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46846 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00490 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00295 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00007 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47206 * 59.99376 * 17 15 13 19 19 H 1.48500 * 109.47030 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46793 * 299.99772 * 17 15 13 21 21 C 1.46919 * 118.73982 * 306.39079 * 6 5 4 22 22 C 1.53070 * 109.44404 * 119.82861 * 2 1 3 23 23 C 1.52992 * 109.38974 * 61.35989 * 22 2 1 24 24 C 1.52997 * 109.62317 * 301.25147 * 22 2 1 25 25 H 1.08999 * 109.47154 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46825 * 299.97111 * 1 2 3 27 27 H 1.08996 * 109.47631 * 59.96435 * 1 2 3 28 28 H 1.09002 * 109.49876 * 58.67511 * 4 2 1 29 29 H 1.09005 * 109.52615 * 298.59760 * 4 2 1 30 30 H 1.08998 * 109.58966 * 294.84519 * 5 4 2 31 31 H 1.08999 * 109.58758 * 174.41876 * 5 4 2 32 32 H 1.09001 * 109.47385 * 300.00399 * 9 7 6 33 33 H 1.08997 * 109.47457 * 60.00250 * 9 7 6 34 34 H 1.09001 * 109.46917 * 300.00128 * 10 9 7 35 35 H 1.08997 * 109.47262 * 59.99573 * 10 9 7 36 36 H 1.09004 * 109.46493 * 299.99956 * 11 10 9 37 37 H 1.08998 * 109.46599 * 59.99358 * 11 10 9 38 38 H 1.09001 * 109.47282 * 300.00086 * 12 11 10 39 39 H 1.08997 * 109.47062 * 59.99631 * 12 11 10 40 40 H 0.96996 * 120.00407 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.58751 * 173.39743 * 21 6 5 42 42 H 1.08996 * 109.58750 * 293.67928 * 21 6 5 43 43 H 1.08999 * 109.47306 * 179.75054 * 23 22 2 44 44 H 1.09002 * 109.47236 * 299.74934 * 23 22 2 45 45 H 1.08998 * 109.47429 * 59.75154 * 23 22 2 46 46 H 1.09005 * 109.47207 * 300.11103 * 24 22 2 47 47 H 1.09002 * 109.47201 * 60.10273 * 24 22 2 48 48 H 1.09001 * 109.47583 * 180.10888 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6889 -1.2642 6 7 4.0676 -1.2493 0.0001 7 6 4.9610 -2.2584 0.0001 8 8 5.3626 -2.7127 1.0504 9 6 5.4608 -2.8223 -1.3050 10 6 6.4574 -3.9490 -1.0254 11 6 6.9654 -4.5212 -2.3504 12 6 7.9624 -5.6475 -2.0708 13 6 8.4622 -6.2113 -3.3759 14 1 8.1049 -5.8065 -4.3112 15 6 9.3757 -7.2440 -3.3759 16 7 9.8113 -7.7367 -2.2369 17 14 9.9959 -7.9425 -4.9936 18 1 10.6668 -6.8699 -5.7711 19 1 10.9625 -9.0366 -4.7222 20 1 8.8506 -8.4767 -5.7735 21 6 3.5711 -0.6890 1.2643 22 6 2.0395 -0.7180 1.2522 23 6 1.5563 -2.1695 1.2374 24 6 1.5055 -0.0140 2.5012 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8903 27 1 -0.3634 0.5144 -0.8896 28 1 1.6573 -0.2206 -2.1399 29 1 1.6975 -1.7556 -1.2390 30 1 3.9144 0.3406 -1.3672 31 1 3.9415 -1.2849 -2.0983 32 1 4.6201 -3.2148 -1.8769 33 1 5.9528 -2.0351 -1.8762 34 1 7.2982 -3.5568 -0.4533 35 1 5.9650 -4.7361 -0.4543 36 1 6.1247 -4.9133 -2.9229 37 1 7.4578 -3.7338 -2.9211 38 1 8.8029 -5.2549 -1.4985 39 1 7.4703 -6.4348 -1.4999 40 1 10.4543 -8.4629 -2.2369 41 1 3.9413 -1.2850 2.0985 42 1 3.9163 0.3396 1.3687 43 1 1.9222 -2.6833 2.1264 44 1 0.4665 -2.1896 1.2288 45 1 1.9360 -2.6698 0.3466 46 1 1.8490 1.0205 2.5101 47 1 0.4158 -0.0347 2.4921 48 1 1.8713 -0.5259 3.3913 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588679421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = -77.564060 kcal Electronic energy + Delta-G solvation = -22701.852520 eV Core-core repulsion = 19562.080886 eV Total energy + Delta-G solvation = -3139.771634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.74754 -38.57410 -34.89243 -34.84586 -32.92469 -32.51737 -29.88747 -28.85006 -27.58053 -27.20753 -25.27294 -23.58737 -22.44964 -22.05865 -20.00477 -19.20901 -18.40485 -16.91180 -16.16832 -15.99974 -15.83362 -15.46085 -14.75826 -14.54676 -14.43789 -14.06556 -13.70071 -13.58624 -13.36679 -12.77629 -12.65368 -12.40727 -12.24623 -12.14100 -12.05916 -11.92507 -11.61200 -11.56925 -11.44092 -11.33420 -10.95653 -10.91739 -10.60820 -10.51604 -10.49169 -10.44972 -10.34953 -9.66680 -9.57732 -9.18637 -8.96057 -8.67757 -8.27978 -5.92848 -3.95434 2.75851 2.95226 3.36724 3.41005 3.43287 4.25043 4.34686 4.40595 4.50609 4.65046 4.73521 4.89152 4.99326 5.04417 5.12519 5.22304 5.32894 5.33654 5.37751 5.40710 5.42452 5.48163 5.51176 5.57669 5.61894 5.64831 5.66773 5.68011 5.76618 5.87955 5.89915 6.00687 6.06778 6.17521 6.22310 6.32996 6.45314 6.59704 6.87735 7.05362 7.23031 7.39098 7.76508 7.93197 8.08795 8.29100 8.50452 9.12177 9.67983 11.18490 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037074 B = 0.002727 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.071193 B =10265.314677 C =10611.295487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.070 0.930 4 C -0.134 4.134 5 C 0.106 3.894 6 N -0.617 5.617 7 C 0.515 3.485 8 O -0.536 6.536 9 C -0.138 4.138 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.120 3.880 22 C -0.074 4.074 23 C -0.141 4.141 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.566 19.407 5.004 28.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.172 4.172 5 C -0.017 4.017 6 N -0.352 5.352 7 C 0.304 3.696 8 O -0.412 6.412 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.002 4.002 22 C -0.075 4.075 23 C -0.198 4.198 24 C -0.199 4.199 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.205 19.010 5.645 28.311 hybrid contribution 0.327 -0.339 -0.944 1.055 sum -19.878 18.671 4.701 27.674 Atomic orbital electron populations 1.21937 0.95096 1.02091 1.01612 1.21118 0.95753 0.99046 0.93967 0.91201 1.22060 0.95168 1.01954 0.98066 1.21746 0.94195 0.99384 0.86367 1.48146 1.44073 1.36156 1.06814 1.21078 0.77863 0.78378 0.92263 1.90686 1.57238 1.59312 1.33952 1.21813 1.01086 1.00434 0.94407 1.21458 0.97408 0.95869 0.99383 1.21646 0.99411 0.99273 0.94400 1.19088 0.93459 0.92395 0.96746 1.21251 1.24501 1.17260 0.92876 0.92819 1.25043 0.96545 0.96840 0.96137 1.69965 1.31836 1.26569 1.25137 0.86673 0.78633 0.78648 0.84114 1.20286 1.21322 1.20294 1.21610 0.92498 0.98688 0.87441 1.20906 0.94908 0.96365 0.95303 1.21910 1.00631 0.94911 1.02371 1.21862 1.01229 1.00090 0.96731 0.92325 0.92368 0.92833 0.90708 0.90884 0.91494 0.89209 0.89296 0.89269 0.91845 0.91861 0.93534 0.93520 0.96603 0.96613 0.92994 0.89015 0.92000 0.92699 0.92518 0.92239 0.92600 0.91983 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.49 37.16 0.32 -0.56 16 2 C -0.08 -0.54 2.00 -90.57 -0.18 -0.72 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 4 C -0.13 -0.93 5.02 -26.61 -0.13 -1.06 16 5 C 0.11 0.86 6.34 -3.71 -0.02 0.83 16 6 N -0.62 -6.88 2.42 -172.77 -0.42 -7.29 16 7 C 0.51 7.58 7.70 -10.98 -0.08 7.50 16 8 O -0.54 -10.09 15.39 5.56 0.09 -10.01 16 9 C -0.14 -1.92 4.05 -27.88 -0.11 -2.03 16 10 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 11 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 12 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16 13 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.81 13.29 55.43 0.74 -27.08 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.12 1.23 5.10 -3.71 -0.02 1.21 16 22 C -0.07 -0.59 0.55 -154.38 -0.08 -0.68 16 23 C -0.14 -1.29 7.66 37.15 0.28 -1.01 16 24 C -0.14 -0.95 8.10 37.16 0.30 -0.65 16 25 H 0.06 0.37 6.47 -51.93 -0.34 0.03 16 26 H 0.06 0.32 6.41 -51.93 -0.33 -0.01 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.57 6.34 -51.93 -0.33 0.24 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.68 5.93 -51.93 -0.31 0.37 16 32 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 33 H 0.09 1.09 7.94 -51.93 -0.41 0.67 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.45 6.47 -51.93 -0.34 0.11 16 45 H 0.06 0.62 5.97 -51.93 -0.31 0.31 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.37 6.42 -51.93 -0.33 0.04 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -33.22 362.78 -8.61 -41.84 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -8.92 Total: -4.81 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.55 Total: -15.17 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.32 Total: -34.37 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.22 -8.61 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588679421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.726 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds