Wall clock time and date at job start Tue Mar 31 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.45871 * 2 1 4 4 C 1.53039 * 109.45888 * 240.03335 * 2 1 3 5 5 C 1.53191 * 109.31416 * 178.62533 * 4 2 1 6 6 N 1.46928 * 108.77343 * 54.63452 * 5 4 2 7 7 C 1.34783 * 120.62874 * 126.37163 * 6 5 4 8 8 O 1.21274 * 119.99655 * 180.02562 * 7 6 5 9 9 C 1.50698 * 119.99922 * 0.02562 * 7 6 5 10 10 C 1.52999 * 109.47009 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47521 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47358 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46846 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00490 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00295 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00007 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47206 * 59.99376 * 17 15 13 19 19 H 1.48500 * 109.47030 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46793 * 299.99772 * 17 15 13 21 21 C 1.46919 * 118.73982 * 306.39079 * 6 5 4 22 22 C 1.53070 * 109.44404 * 119.82861 * 2 1 3 23 23 C 1.52992 * 109.38974 * 61.35989 * 22 2 1 24 24 C 1.52997 * 109.62317 * 301.25147 * 22 2 1 25 25 H 1.08999 * 109.47154 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46825 * 299.97111 * 1 2 3 27 27 H 1.08996 * 109.47631 * 59.96435 * 1 2 3 28 28 H 1.09002 * 109.49876 * 58.67511 * 4 2 1 29 29 H 1.09005 * 109.52615 * 298.59760 * 4 2 1 30 30 H 1.08998 * 109.58966 * 294.84519 * 5 4 2 31 31 H 1.08999 * 109.58758 * 174.41876 * 5 4 2 32 32 H 1.09001 * 109.47385 * 300.00399 * 9 7 6 33 33 H 1.08997 * 109.47457 * 60.00250 * 9 7 6 34 34 H 1.09001 * 109.46917 * 300.00128 * 10 9 7 35 35 H 1.08997 * 109.47262 * 59.99573 * 10 9 7 36 36 H 1.09004 * 109.46493 * 299.99956 * 11 10 9 37 37 H 1.08998 * 109.46599 * 59.99358 * 11 10 9 38 38 H 1.09001 * 109.47282 * 300.00086 * 12 11 10 39 39 H 1.08997 * 109.47062 * 59.99631 * 12 11 10 40 40 H 0.96996 * 120.00407 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.58751 * 173.39743 * 21 6 5 42 42 H 1.08996 * 109.58750 * 293.67928 * 21 6 5 43 43 H 1.08999 * 109.47306 * 179.75054 * 23 22 2 44 44 H 1.09002 * 109.47236 * 299.74934 * 23 22 2 45 45 H 1.08998 * 109.47429 * 59.75154 * 23 22 2 46 46 H 1.09005 * 109.47207 * 300.11103 * 24 22 2 47 47 H 1.09002 * 109.47201 * 60.10273 * 24 22 2 48 48 H 1.09001 * 109.47583 * 180.10888 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6889 -1.2642 6 7 4.0676 -1.2493 0.0001 7 6 4.9610 -2.2584 0.0001 8 8 5.3626 -2.7127 1.0504 9 6 5.4608 -2.8223 -1.3050 10 6 6.4574 -3.9490 -1.0254 11 6 6.9654 -4.5212 -2.3504 12 6 7.9624 -5.6475 -2.0708 13 6 8.4622 -6.2113 -3.3759 14 1 8.1049 -5.8065 -4.3112 15 6 9.3757 -7.2440 -3.3759 16 7 9.8113 -7.7367 -2.2369 17 14 9.9959 -7.9425 -4.9936 18 1 10.6668 -6.8699 -5.7711 19 1 10.9625 -9.0366 -4.7222 20 1 8.8506 -8.4767 -5.7735 21 6 3.5711 -0.6890 1.2643 22 6 2.0395 -0.7180 1.2522 23 6 1.5563 -2.1695 1.2374 24 6 1.5055 -0.0140 2.5012 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8903 27 1 -0.3634 0.5144 -0.8896 28 1 1.6573 -0.2206 -2.1399 29 1 1.6975 -1.7556 -1.2390 30 1 3.9144 0.3406 -1.3672 31 1 3.9415 -1.2849 -2.0983 32 1 4.6201 -3.2148 -1.8769 33 1 5.9528 -2.0351 -1.8762 34 1 7.2982 -3.5568 -0.4533 35 1 5.9650 -4.7361 -0.4543 36 1 6.1247 -4.9133 -2.9229 37 1 7.4578 -3.7338 -2.9211 38 1 8.8029 -5.2549 -1.4985 39 1 7.4703 -6.4348 -1.4999 40 1 10.4543 -8.4629 -2.2369 41 1 3.9413 -1.2850 2.0985 42 1 3.9163 0.3396 1.3687 43 1 1.9222 -2.6833 2.1264 44 1 0.4665 -2.1896 1.2288 45 1 1.9360 -2.6698 0.3466 46 1 1.8490 1.0205 2.5101 47 1 0.4158 -0.0347 2.4921 48 1 1.8713 -0.5259 3.3913 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588679421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:26 Heat of formation + Delta-G solvation = -95.924243 kcal Electronic energy + Delta-G solvation = -22702.648677 eV Core-core repulsion = 19562.080886 eV Total energy + Delta-G solvation = -3140.567791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61258 -39.54950 -36.65148 -35.72789 -34.61307 -33.49641 -31.57907 -29.50019 -28.44264 -28.21469 -26.81054 -24.57541 -23.61695 -23.04620 -21.77937 -20.19507 -19.09125 -18.43466 -17.92947 -17.00697 -16.92589 -16.47845 -16.16206 -15.85339 -15.13254 -15.07560 -14.72232 -14.54073 -14.46151 -14.08795 -13.74584 -13.63074 -13.41693 -13.31558 -12.98346 -12.81775 -12.78105 -12.64014 -12.61135 -12.34794 -12.16832 -12.14828 -12.08339 -11.95378 -11.60511 -11.38922 -11.36820 -11.23457 -11.09569 -11.04470 -10.64965 -10.54544 -9.57739 -8.18510 -6.31070 1.40222 1.44571 1.52413 1.63539 2.03261 2.42162 3.13986 3.52051 3.74791 3.76428 3.81574 4.01396 4.06576 4.11699 4.22729 4.34643 4.45201 4.54182 4.59078 4.65159 4.66309 4.75534 4.76465 4.80890 4.84261 4.84657 4.89761 4.94260 5.01182 5.06213 5.11566 5.13737 5.17244 5.18789 5.25490 5.31967 5.35883 5.39532 5.51099 5.55990 5.62335 5.65943 5.77345 5.87558 6.24996 6.41450 6.87259 7.20472 7.38583 8.93704 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037074 B = 0.002727 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.071193 B =10265.314677 C =10611.295487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 H 0.080 0.920 4 C -0.131 4.131 5 C 0.097 3.903 6 N -0.608 5.608 7 C 0.509 3.491 8 O -0.591 6.591 9 C -0.126 4.126 10 C -0.095 4.095 11 C -0.094 4.094 12 C 0.019 3.981 13 C -0.543 4.543 14 H 0.067 0.933 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.116 3.884 22 C -0.069 4.069 23 C -0.139 4.139 24 C -0.139 4.139 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.062 0.938 38 H -0.016 1.016 39 H -0.017 1.017 40 H 0.263 0.737 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.283 21.485 2.341 31.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 H 0.098 0.902 4 C -0.169 4.169 5 C -0.024 4.024 6 N -0.340 5.340 7 C 0.299 3.701 8 O -0.472 6.472 9 C -0.166 4.166 10 C -0.133 4.133 11 C -0.132 4.132 12 C -0.018 4.018 13 C -0.580 4.580 14 H 0.085 0.915 15 C -0.204 4.204 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.189 1.189 21 C -0.006 4.006 22 C -0.069 4.069 23 C -0.196 4.196 24 C -0.197 4.197 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.969 21.138 2.954 30.630 hybrid contribution 0.840 -0.964 -0.054 1.280 sum -21.129 20.174 2.900 29.357 Atomic orbital electron populations 1.21911 0.94157 1.01952 1.02436 1.21116 0.96461 0.99177 0.92796 0.90157 1.22059 0.94098 1.01675 0.99104 1.22082 0.95147 1.00383 0.84791 1.48196 1.42545 1.34720 1.08543 1.21208 0.78280 0.78948 0.91676 1.90669 1.59523 1.61381 1.35627 1.21687 1.00812 0.99439 0.94626 1.21244 0.97758 0.96876 0.97426 1.21438 0.98327 0.97534 0.95855 1.19047 0.93687 0.93526 0.95531 1.21728 1.24792 1.17670 0.93849 0.91478 1.26114 0.96699 0.97234 1.00395 1.70130 1.32553 1.27223 1.28031 0.85424 0.78285 0.77979 0.78894 1.18826 1.21085 1.18854 1.21710 0.94170 0.98595 0.86146 1.20877 0.93089 0.95910 0.97066 1.21888 1.01467 0.95579 1.00638 1.21848 1.01880 1.00359 0.95566 0.92930 0.91829 0.91785 0.88415 0.91979 0.89529 0.88261 0.86718 0.86501 0.94007 0.94119 0.92051 0.91978 0.99790 0.99838 0.92838 0.92101 0.90508 0.94765 0.91046 0.93653 0.91478 0.90821 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.49 71.98 0.61 -0.66 16 2 C -0.08 -0.81 2.00 -10.76 -0.02 -0.83 16 3 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 4 C -0.13 -1.40 5.02 30.67 0.15 -1.24 16 5 C 0.10 1.27 6.34 86.36 0.55 1.82 16 6 N -0.61 -12.89 2.42 -818.92 -1.98 -14.87 16 7 C 0.51 15.05 7.70 87.66 0.67 15.72 16 8 O -0.59 -23.54 15.39 -3.01 -0.05 -23.59 16 9 C -0.13 -3.35 4.05 29.85 0.12 -3.23 16 10 C -0.09 -3.59 4.50 30.60 0.14 -3.45 16 11 C -0.09 -3.93 5.15 30.59 0.16 -3.77 16 12 C 0.02 1.08 4.97 29.85 0.15 1.22 16 13 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 14 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 15 C -0.01 -0.44 5.46 84.65 0.46 0.03 16 16 N -0.94 -59.84 13.29 21.45 0.28 -59.56 16 17 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.12 2.33 5.10 86.36 0.44 2.77 16 22 C -0.07 -1.01 0.55 -52.10 -0.03 -1.04 16 23 C -0.14 -2.52 7.66 71.98 0.55 -1.97 16 24 C -0.14 -1.67 8.10 71.98 0.58 -1.08 16 25 H 0.05 0.53 6.47 -2.39 -0.02 0.51 16 26 H 0.06 0.49 6.41 -2.39 -0.02 0.48 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.83 6.34 -2.38 -0.02 0.81 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 1.13 5.93 -2.39 -0.01 1.12 16 32 H 0.11 2.48 7.69 -2.39 -0.02 2.46 16 33 H 0.12 2.49 7.94 -2.39 -0.02 2.47 16 34 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 40 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.06 1.61 7.00 -2.39 -0.02 1.60 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 1.06 6.47 -2.39 -0.02 1.04 16 45 H 0.04 0.94 5.97 -2.39 -0.01 0.93 16 46 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.07 0.73 6.42 -2.39 -0.02 0.71 16 48 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -75.61 362.78 5.95 -69.66 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.90 Total: 8.53 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 4.77 Total: -27.31 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -1.70 Total: -74.43 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.05 Total: -23.59 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -75.61 5.95 -69.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588679421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.266 kcal (2) G-P(sol) polarization free energy of solvation -75.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds