Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46469 * 2 1 4 4 C 1.53046 * 109.44627 * 119.96582 * 2 1 3 5 5 C 1.52764 * 109.38348 * 181.25730 * 4 2 1 6 6 N 1.46933 * 109.00223 * 305.58415 * 5 4 2 7 7 C 1.34777 * 120.62902 * 233.58251 * 6 5 4 8 8 O 1.21279 * 120.00166 * 179.72411 * 7 6 5 9 9 C 1.50706 * 119.99762 * 359.72617 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47340 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.46919 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00202 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99746 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99981 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99783 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46802 * 90.00490 * 17 15 13 19 19 H 1.48502 * 109.46977 * 209.99785 * 17 15 13 20 20 H 1.48494 * 109.47494 * 330.00512 * 17 15 13 21 21 C 1.46923 * 118.73771 * 53.31664 * 6 5 4 22 22 C 1.53037 * 109.46186 * 240.02512 * 2 1 3 23 23 C 1.52996 * 109.49889 * 58.67741 * 22 2 1 24 24 C 1.53005 * 109.52443 * 298.59722 * 22 2 1 25 25 H 1.08992 * 109.47259 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47134 * 299.97846 * 1 2 3 27 27 H 1.09000 * 109.46623 * 59.97515 * 1 2 3 28 28 H 1.09006 * 109.49662 * 301.32879 * 4 2 1 29 29 H 1.08990 * 109.49980 * 61.39162 * 4 2 1 30 30 H 1.08995 * 109.51145 * 185.70757 * 5 4 2 31 31 H 1.08998 * 109.43430 * 65.41936 * 5 4 2 32 32 H 1.09000 * 109.47318 * 299.99141 * 9 7 6 33 33 H 1.09000 * 109.47161 * 59.99772 * 9 7 6 34 34 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 35 35 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 36 36 H 1.09004 * 109.46785 * 299.99692 * 11 10 9 37 37 H 1.09000 * 109.47196 * 59.99588 * 11 10 9 38 38 H 1.09000 * 109.46497 * 299.99439 * 12 11 10 39 39 H 1.08999 * 109.46623 * 59.99375 * 12 11 10 40 40 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.58936 * 66.42782 * 21 6 5 42 42 H 1.09004 * 109.58520 * 186.85232 * 21 6 5 43 43 H 1.08997 * 109.47534 * 179.83558 * 23 22 2 44 44 H 1.09000 * 109.47181 * 299.84360 * 23 22 2 45 45 H 1.09003 * 109.47048 * 59.84170 * 23 22 2 46 46 H 1.08996 * 109.46951 * 300.14931 * 24 22 2 47 47 H 1.08996 * 109.46828 * 60.14730 * 24 22 2 48 48 H 1.08998 * 109.47465 * 180.14677 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 3.5668 -0.6927 1.2647 6 7 4.0676 -1.2494 0.0005 7 6 4.9609 -2.2586 0.0007 8 8 5.3629 -2.7128 -1.0495 9 6 5.4603 -2.8225 1.3060 10 6 6.4569 -3.9493 1.0266 11 6 6.9635 -4.5223 2.3517 12 6 7.9606 -5.6487 2.0724 13 6 8.4600 -6.2126 3.3776 14 1 8.1023 -5.8078 4.3128 15 6 9.3735 -7.2454 3.3778 16 7 9.8094 -7.7379 2.2390 17 14 9.9931 -7.9439 4.9957 18 1 9.1086 -9.0567 5.4254 19 1 11.3770 -8.4521 4.8178 20 1 9.9861 -6.8784 6.0300 21 6 3.5714 -0.6891 -1.2638 22 6 2.0399 -0.7209 -1.2499 23 6 1.5031 -0.0191 -2.4990 24 6 1.5594 -2.1735 -1.2342 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3632 0.5142 -0.8898 28 1 1.6568 -0.2206 2.1399 29 1 1.6968 -1.7554 1.2388 30 1 3.9341 -1.2911 2.0983 31 1 3.9096 0.3365 1.3719 32 1 5.9523 -2.0354 1.8774 33 1 4.6194 -3.2151 1.8776 34 1 5.9647 -4.7364 0.4554 35 1 7.2979 -3.5571 0.4547 36 1 7.4557 -3.7354 2.9233 37 1 6.1223 -4.9146 2.9232 38 1 7.4688 -6.4357 1.5006 39 1 8.8017 -5.2559 1.5011 40 1 10.4523 -8.4642 2.2392 41 1 3.9146 0.3403 -1.3669 42 1 3.9417 -1.2851 -2.0980 43 1 1.8689 -0.5311 -3.3890 44 1 0.4134 -0.0419 -2.4886 45 1 1.8447 1.0160 -2.5092 46 1 1.9411 -2.6727 -0.3436 47 1 0.4698 -2.1956 -1.2243 48 1 1.9252 -2.6869 -2.1234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588679422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = -77.552651 kcal Electronic energy + Delta-G solvation = -22704.489043 eV Core-core repulsion = 19564.717903 eV Total energy + Delta-G solvation = -3139.771139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75931 -38.57677 -34.89337 -34.84935 -32.93560 -32.52051 -29.88909 -28.86779 -27.57992 -27.20885 -25.27325 -23.58380 -22.44606 -22.05995 -20.00513 -19.21005 -18.40696 -16.91254 -16.17157 -16.00231 -15.83472 -15.46793 -14.76167 -14.54381 -14.43472 -14.06546 -13.70507 -13.58590 -13.37051 -12.77695 -12.65832 -12.41264 -12.24540 -12.14398 -12.06059 -11.92585 -11.61205 -11.56958 -11.43747 -11.33486 -10.97006 -10.92022 -10.60421 -10.50795 -10.48163 -10.45142 -10.35123 -9.66674 -9.57983 -9.18619 -8.95294 -8.67891 -8.28375 -5.93152 -3.95580 2.75806 2.95173 3.35319 3.41258 3.44526 4.25275 4.34192 4.40561 4.50513 4.65587 4.73660 4.89124 4.99275 5.04319 5.12523 5.22389 5.33045 5.33731 5.37814 5.40714 5.42343 5.48319 5.51210 5.57580 5.61729 5.64834 5.66723 5.67985 5.76655 5.87918 5.89858 6.00650 6.06711 6.17498 6.22233 6.33012 6.45282 6.59670 6.87717 7.05330 7.22994 7.39069 7.76661 7.93102 8.08628 8.29090 8.50382 9.12231 9.67894 11.18242 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037081 B = 0.002728 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.927848 B =10262.670058 C =10608.637236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.070 0.930 4 C -0.135 4.135 5 C 0.106 3.894 6 N -0.617 5.617 7 C 0.515 3.485 8 O -0.536 6.536 9 C -0.138 4.138 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.120 3.880 22 C -0.074 4.074 23 C -0.142 4.142 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.577 19.417 -5.003 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.173 4.173 5 C -0.017 4.017 6 N -0.352 5.352 7 C 0.304 3.696 8 O -0.412 6.412 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.002 4.002 22 C -0.075 4.075 23 C -0.199 4.199 24 C -0.198 4.198 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.213 19.029 -5.640 28.328 hybrid contribution 0.322 -0.356 0.935 1.051 sum -19.892 18.672 -4.705 27.685 Atomic orbital electron populations 1.21936 0.95092 1.02092 1.01612 1.21116 0.95761 0.99030 0.93972 0.91176 1.21992 0.95223 1.01974 0.98110 1.21654 0.94200 0.99440 0.86376 1.48148 1.43989 1.36236 1.06807 1.21078 0.77882 0.78357 0.92265 1.90687 1.57254 1.59284 1.33967 1.21815 1.01084 1.00434 0.94405 1.21458 0.97415 0.95863 0.99381 1.21645 0.99415 0.99272 0.94399 1.19094 0.93465 0.92403 0.96764 1.21288 1.24420 1.17194 0.92898 0.92769 1.25046 0.96549 0.96865 0.96139 1.69977 1.31896 1.26526 1.25097 0.86613 0.78087 0.79287 0.84108 1.20718 1.21260 1.19927 1.21621 0.92485 0.98683 0.87444 1.20906 0.94925 0.96354 0.95320 1.21866 1.01222 1.00102 0.96743 1.21907 1.00639 0.94888 1.02371 0.92328 0.92830 0.92365 0.90680 0.90902 0.89219 0.91522 0.89265 0.89301 0.91868 0.91837 0.93519 0.93535 0.96612 0.96594 0.93056 0.91972 0.88998 0.92405 0.91981 0.92601 0.92244 0.92520 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.49 37.16 0.32 -0.56 16 2 C -0.08 -0.54 2.00 -90.58 -0.18 -0.72 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -0.93 5.00 -26.83 -0.13 -1.06 16 5 C 0.11 0.86 6.31 -3.93 -0.02 0.83 16 6 N -0.62 -6.87 2.42 -173.02 -0.42 -7.29 16 7 C 0.51 7.58 7.70 -10.98 -0.08 7.50 16 8 O -0.54 -10.09 15.39 5.56 0.09 -10.01 16 9 C -0.14 -1.92 4.05 -27.88 -0.11 -2.03 16 10 C -0.10 -1.90 4.50 -26.73 -0.12 -2.03 16 11 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.12 1.23 5.11 -3.71 -0.02 1.21 16 22 C -0.07 -0.59 0.54 -154.39 -0.08 -0.68 16 23 C -0.14 -0.95 8.09 37.16 0.30 -0.65 16 24 C -0.14 -1.29 7.66 37.16 0.28 -1.01 16 25 H 0.06 0.37 6.47 -51.93 -0.34 0.03 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.32 6.41 -51.93 -0.33 -0.02 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.57 6.34 -51.93 -0.33 0.24 16 30 H 0.09 0.68 5.93 -51.93 -0.31 0.37 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 1.09 7.95 -51.93 -0.41 0.67 16 33 H 0.09 1.08 7.68 -51.93 -0.40 0.68 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.37 6.41 -51.93 -0.33 0.04 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.62 5.97 -51.93 -0.31 0.31 16 47 H 0.06 0.45 6.48 -51.93 -0.34 0.11 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -33.24 362.72 -8.62 -41.86 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -8.92 Total: -4.84 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.55 Total: -15.17 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.32 Total: -34.36 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.24 -8.62 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588679422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.693 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds