Wall clock time and date at job start Tue Mar 31 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46568 * 2 1 4 4 C 1.53003 * 109.47170 * 119.99844 * 2 1 3 5 5 C 1.52997 * 109.46951 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47448 * 300.00358 * 5 4 2 7 7 C 1.52995 * 109.46969 * 59.99606 * 6 5 4 8 8 C 1.53002 * 109.46828 * 240.00135 * 2 1 3 9 9 C 1.53000 * 109.47123 * 59.99967 * 8 2 1 10 10 N 1.46494 * 109.47001 * 299.99604 * 8 2 1 11 11 C 1.34784 * 119.99635 * 180.02562 * 10 8 2 12 12 O 1.21279 * 119.99925 * 359.97438 * 11 10 8 13 13 C 1.50700 * 119.99961 * 180.02562 * 11 10 8 14 14 C 1.52992 * 109.47257 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47274 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46977 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.46630 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99853 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47228 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46793 * 120.00131 * 21 19 17 24 24 H 1.48492 * 109.47108 * 240.00016 * 21 19 17 25 25 H 1.09005 * 109.46707 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47134 * 299.99713 * 1 2 3 27 27 H 1.08999 * 109.47484 * 60.00498 * 1 2 3 28 28 H 1.08998 * 109.46996 * 300.00522 * 4 2 1 29 29 H 1.08996 * 109.46790 * 60.00298 * 4 2 1 30 30 H 1.09005 * 109.46816 * 59.99979 * 5 4 2 31 31 H 1.08997 * 109.47440 * 180.02562 * 5 4 2 32 32 H 1.08992 * 109.47421 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.46807 * 300.00187 * 6 5 4 34 34 H 1.08998 * 109.47085 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.47339 * 60.00352 * 7 6 5 36 36 H 1.08997 * 109.46749 * 299.99526 * 9 8 2 37 37 H 1.08996 * 109.47024 * 59.99669 * 9 8 2 38 38 H 1.08998 * 109.46637 * 179.97438 * 9 8 2 39 39 H 0.96995 * 120.00292 * 0.27801 * 10 8 2 40 40 H 1.09004 * 109.46932 * 300.00223 * 13 11 10 41 41 H 1.08997 * 109.47392 * 59.99562 * 13 11 10 42 42 H 1.09004 * 109.47330 * 299.99977 * 14 13 11 43 43 H 1.09005 * 109.47124 * 59.99773 * 14 13 11 44 44 H 1.08999 * 109.46783 * 300.00124 * 15 14 13 45 45 H 1.09000 * 109.46608 * 60.00231 * 15 14 13 46 46 H 1.08988 * 109.47430 * 300.00270 * 16 15 14 47 47 H 1.08997 * 109.46441 * 60.00731 * 16 15 14 48 48 H 0.97000 * 119.99712 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0796 -1.4433 -0.0004 7 6 3.5695 -0.7221 -1.2495 8 6 2.0400 -0.7212 -1.2493 9 6 1.5299 0.0000 -2.4985 10 7 1.5517 -2.1024 -1.2492 11 6 1.8777 -2.9324 -2.2599 12 8 2.5749 -2.5357 -3.1695 13 6 1.3750 -4.3531 -2.2602 14 6 1.8860 -5.0747 -3.5087 15 6 1.3761 -6.5173 -3.5087 16 6 1.8867 -7.2387 -4.7577 17 6 1.3850 -8.6597 -4.7572 18 1 0.7638 -9.0128 -3.9475 19 6 1.7191 -9.5090 -5.7908 20 7 2.4761 -9.0791 -6.7766 21 14 1.0966 -11.2703 -5.7907 22 1 0.2701 -11.5031 -4.5792 23 1 0.2728 -11.5041 -7.0039 24 1 2.2517 -12.2035 -5.7893 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.6767 -0.2074 2.1392 29 1 1.6768 -1.7489 1.2492 30 1 3.9337 0.3058 1.2486 31 1 3.9335 -1.2359 2.1386 32 1 5.1695 -1.4441 -0.0004 33 1 3.7158 -2.4709 -0.0002 34 1 3.9321 -1.2364 -2.1395 35 1 3.9331 0.3055 -1.2498 36 1 0.4400 0.0000 -2.4984 37 1 1.8932 1.0277 -2.4984 38 1 1.8936 -0.5136 -3.3884 39 1 0.9908 -2.4185 -0.5238 40 1 1.7376 -4.8670 -1.3699 41 1 0.2850 -4.3528 -2.2608 42 1 1.5238 -4.5609 -4.3992 43 1 2.9761 -5.0750 -3.5076 44 1 1.7388 -7.0307 -2.6182 45 1 0.2861 -6.5173 -3.5097 46 1 1.5239 -6.7251 -5.6478 47 1 2.9767 -7.2386 -4.7570 48 1 2.7108 -9.6766 -7.5038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590894127.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:44 Heat of formation + Delta-G solvation = -87.774802 kcal Electronic energy + Delta-G solvation = -22833.287702 eV Core-core repulsion = 19693.073297 eV Total energy + Delta-G solvation = -3140.214405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87905 -38.31956 -34.88021 -34.07768 -32.79541 -32.64419 -31.47033 -29.40528 -27.54138 -25.97889 -25.45837 -22.85885 -22.04055 -21.12800 -20.43613 -19.91837 -19.06835 -17.10281 -16.17518 -15.81207 -15.45991 -15.20615 -14.62926 -14.45186 -14.38470 -14.30590 -13.78236 -13.74267 -13.13699 -12.64797 -12.58143 -12.23462 -12.19004 -12.10387 -11.99632 -11.86456 -11.63822 -11.52761 -11.50869 -11.16321 -10.96900 -10.81762 -10.49071 -10.46716 -10.38122 -10.35354 -10.30430 -9.57982 -9.46761 -9.14172 -8.97297 -8.92955 -8.28734 -5.93372 -3.95662 2.83867 3.22312 3.34402 3.41525 3.45601 4.29216 4.40690 4.44046 4.50712 4.81489 4.83663 4.92218 5.10960 5.15089 5.20540 5.26039 5.30310 5.37835 5.41567 5.43836 5.49935 5.50726 5.55409 5.65519 5.73374 5.76306 5.82685 5.89449 5.93014 5.94577 6.05599 6.15328 6.18579 6.24930 6.29332 6.35685 6.57411 6.63928 6.88518 7.06596 7.23673 7.60012 7.76931 7.93166 8.08544 8.40939 8.50541 9.12393 9.67907 11.18004 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032717 B = 0.002765 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.630514 B =10122.626279 C =10134.501802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.082 0.918 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.184 3.816 9 C -0.167 4.167 10 N -0.726 5.726 11 C 0.514 3.486 12 O -0.532 6.532 13 C -0.141 4.141 14 C -0.101 4.101 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.396 0.604 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 21.321 17.980 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.100 0.900 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.170 4.170 8 C 0.098 3.902 9 C -0.224 4.224 10 N -0.380 5.380 11 C 0.302 3.698 12 O -0.408 6.408 13 C -0.181 4.181 14 C -0.139 4.139 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.231 0.769 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.545 21.553 17.154 27.590 hybrid contribution -0.601 -1.135 0.328 1.326 sum -2.147 20.418 17.482 26.965 Atomic orbital electron populations 1.21912 0.94849 1.02049 1.02036 1.21399 0.95905 0.99894 0.93956 0.90003 1.21602 0.95891 1.00633 0.97108 1.21545 0.95372 1.00670 0.98075 1.21478 1.00060 0.99767 0.94139 1.21956 0.94338 1.01043 0.99631 1.20216 0.93741 0.81467 0.94744 1.22277 1.01083 1.00048 0.99040 1.46250 1.54184 1.11783 1.25818 1.20976 0.79758 0.87902 0.81197 1.90631 1.37320 1.77132 1.35682 1.21801 1.02234 0.91721 1.02301 1.21424 1.01119 0.96269 0.95129 1.21651 0.99429 0.92863 1.00858 1.19094 0.96440 0.94385 0.91808 1.21330 1.31132 0.96558 1.06727 0.92727 1.25048 0.95303 0.98583 0.95679 1.69987 1.37067 1.35713 1.10713 0.86561 0.78613 0.85092 0.77880 1.19780 1.21063 1.21059 0.92602 0.92540 0.91999 0.91849 0.91921 0.92144 0.92138 0.92202 0.91903 0.89387 0.91742 0.92443 0.92317 0.90115 0.76921 0.89440 0.89414 0.91871 0.91879 0.93561 0.93565 0.96615 0.96618 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.67 37.16 0.32 -0.63 16 2 C -0.09 -0.65 2.01 -90.61 -0.18 -0.83 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.75 5.03 -26.73 -0.13 -0.89 16 5 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 6 C -0.12 -1.09 5.77 -26.73 -0.15 -1.24 16 7 C -0.13 -1.36 4.52 -26.76 -0.12 -1.49 16 8 C 0.18 1.73 0.35 -131.85 -0.05 1.68 16 9 C -0.17 -1.72 8.05 37.16 0.30 -1.42 16 10 N -0.73 -7.21 3.74 -47.63 -0.18 -7.39 16 11 C 0.51 6.95 7.25 -10.98 -0.08 6.87 16 12 O -0.53 -9.11 12.19 5.56 0.07 -9.04 16 13 C -0.14 -1.88 5.70 -27.89 -0.16 -2.04 16 14 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 21 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.05 0.35 6.86 -51.93 -0.36 -0.01 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.41 6.87 -51.93 -0.36 0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.66 7.60 -51.93 -0.39 0.26 16 34 H 0.09 1.19 6.16 -51.93 -0.32 0.87 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 39 H 0.40 3.08 6.16 -40.82 -0.25 2.83 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.44 8.14 -51.94 -0.42 0.02 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -32.45 361.44 -9.14 -41.58 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.97 Total: -1.69 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.22 Total: -18.94 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.56 Total: -34.40 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.45 -9.14 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590894127.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.192 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds