Wall clock time and date at job start Tue Mar 31 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00225 * 2 1 3 5 5 C 1.53005 * 109.47452 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47159 * 59.99536 * 5 4 2 7 7 C 1.52997 * 109.47317 * 300.00546 * 6 5 4 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47631 * 59.99933 * 8 7 6 11 11 C 1.34777 * 119.99875 * 59.99543 * 10 8 7 12 12 O 1.21284 * 119.99750 * 0.02562 * 11 10 8 13 13 C 1.50696 * 120.00141 * 180.02562 * 11 10 8 14 14 C 1.53002 * 109.47300 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46969 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46972 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47308 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99983 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00130 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47057 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 119.99579 * 21 19 17 24 24 H 1.48495 * 109.47216 * 239.99726 * 21 19 17 25 25 H 1.09000 * 109.47140 * 299.99624 * 1 2 3 26 26 H 1.09001 * 109.46922 * 59.99924 * 1 2 3 27 27 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 29 29 H 1.09001 * 109.47289 * 60.00075 * 4 2 1 30 30 H 1.09000 * 109.47360 * 180.02562 * 5 4 2 31 31 H 1.09002 * 109.46935 * 300.00125 * 5 4 2 32 32 H 1.08996 * 109.46929 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46716 * 60.00455 * 6 5 4 34 34 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 35 35 H 1.09001 * 109.46832 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 37 37 H 1.09000 * 109.47437 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 39 39 H 0.96999 * 120.00082 * 240.00562 * 10 8 7 40 40 H 1.09004 * 109.47043 * 300.00223 * 13 11 10 41 41 H 1.09004 * 109.47476 * 60.00149 * 13 11 10 42 42 H 1.09004 * 109.46930 * 299.99895 * 14 13 11 43 43 H 1.09000 * 109.47312 * 59.99951 * 14 13 11 44 44 H 1.08996 * 109.47452 * 300.00062 * 15 14 13 45 45 H 1.09004 * 109.47552 * 59.99908 * 15 14 13 46 46 H 1.08993 * 109.47662 * 300.00035 * 16 15 14 47 47 H 1.09000 * 109.46986 * 60.00258 * 16 15 14 48 48 H 0.97005 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4415 -0.0004 7 6 3.5706 -0.7203 1.2489 8 6 2.0406 -0.7210 1.2492 9 6 1.5306 0.0008 2.4981 10 7 1.5527 -2.1023 1.2495 11 6 1.8789 -2.9319 2.2603 12 8 2.5759 -2.5347 3.1699 13 6 1.3776 -4.3531 2.2603 14 6 1.8876 -5.0738 3.5099 15 6 1.3780 -6.5164 3.5102 16 6 1.8885 -7.2373 4.7594 17 6 1.3872 -8.6586 4.7595 18 1 0.7668 -9.0123 3.9493 19 6 1.7204 -9.5071 5.7938 20 7 2.4762 -9.0764 6.7801 21 14 1.0996 -11.2689 5.7934 22 1 0.2751 -11.5029 4.5807 23 1 2.2555 -12.2011 5.7942 24 1 0.2741 -11.5030 7.0054 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 -1.7489 -1.2493 29 1 1.6767 -0.2073 -2.1392 30 1 3.9334 -1.2341 -2.1398 31 1 3.9330 0.3072 -1.2498 32 1 5.1706 -1.4415 -0.0009 33 1 3.7176 -2.4693 -0.0002 34 1 3.9335 0.3075 1.2487 35 1 3.9340 -1.2342 2.1388 36 1 1.8935 1.0286 2.4976 37 1 0.4406 0.0000 2.4987 38 1 1.8943 -0.5124 3.3883 39 1 0.9951 -2.4199 0.5221 40 1 0.2875 -4.3538 2.2603 41 1 1.7412 -4.8667 1.3703 42 1 2.9776 -5.0731 3.5103 43 1 1.5235 -4.5601 4.3997 44 1 0.2880 -6.5168 3.5099 45 1 1.7416 -7.0305 2.6204 46 1 2.9785 -7.2370 4.7593 47 1 1.5252 -6.7235 5.6494 48 1 2.7110 -9.6735 7.5076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590894128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:52 Heat of formation + Delta-G solvation = -87.839088 kcal Electronic energy + Delta-G solvation = -22832.467579 eV Core-core repulsion = 19692.250386 eV Total energy + Delta-G solvation = -3140.217193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -40.87640 -38.31917 -34.88018 -34.07674 -32.79555 -32.64405 -31.47042 -29.40490 -27.54138 -25.97852 -25.45836 -22.85942 -22.04050 -21.12823 -20.43628 -19.91845 -19.06820 -17.10201 -16.17488 -15.81212 -15.46048 -15.20596 -14.62997 -14.45218 -14.38437 -14.30494 -13.78185 -13.74308 -13.13657 -12.64654 -12.58161 -12.23486 -12.18972 -12.10510 -11.99619 -11.86506 -11.63800 -11.52766 -11.50843 -11.16312 -10.96904 -10.81813 -10.49086 -10.46675 -10.38122 -10.35370 -10.30485 -9.57964 -9.46827 -9.14211 -8.97312 -8.92929 -8.28737 -5.93327 -3.95681 2.83859 3.22306 3.34409 3.41537 3.45594 4.29186 4.40650 4.43994 4.50724 4.81407 4.83626 4.92210 5.10927 5.15042 5.20517 5.26043 5.30274 5.37792 5.41603 5.43847 5.49952 5.50638 5.55422 5.65504 5.73362 5.76277 5.82622 5.89404 5.92965 5.94519 6.05516 6.15246 6.18553 6.24841 6.29334 6.35705 6.57395 6.63913 6.88508 7.06600 7.23673 7.59994 7.76919 7.93126 8.08542 8.40942 8.50493 9.12361 9.67944 11.18042 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032717 B = 0.002765 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.629687 B =10123.617000 C =10135.615796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.082 0.918 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.184 3.816 9 C -0.166 4.166 10 N -0.726 5.726 11 C 0.514 3.486 12 O -0.532 6.532 13 C -0.141 4.141 14 C -0.101 4.101 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.396 0.604 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 21.316 -17.993 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.100 0.900 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.170 4.170 8 C 0.098 3.902 9 C -0.224 4.224 10 N -0.380 5.380 11 C 0.302 3.698 12 O -0.408 6.408 13 C -0.181 4.181 14 C -0.139 4.139 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.231 0.769 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.543 21.549 -17.166 27.594 hybrid contribution -0.597 -1.137 -0.330 1.326 sum -2.140 20.412 -17.496 26.969 Atomic orbital electron populations 1.21910 0.94844 1.02052 1.02034 1.21398 0.95907 0.99897 0.93955 0.90005 1.21604 0.95889 1.00631 0.97114 1.21545 0.95369 1.00679 0.98070 1.21477 1.00060 0.99768 0.94141 1.21965 0.94340 1.01042 0.99620 1.20224 0.93734 0.81463 0.94749 1.22276 1.01087 1.00038 0.99037 1.46247 1.54349 1.11748 1.25679 1.20975 0.79739 0.87906 0.81215 1.90633 1.37302 1.77123 1.35712 1.21803 1.02248 0.91714 1.02294 1.21424 1.01126 0.96275 0.95112 1.21648 0.99426 0.92864 1.00864 1.19097 0.96441 0.94388 0.91810 1.21330 1.31182 0.96566 1.06657 0.92728 1.25043 0.95311 0.98582 0.95677 1.69988 1.37108 1.35708 1.10682 0.86562 0.78606 0.85098 0.77879 1.19782 1.21059 1.21065 0.92000 0.92542 0.92598 0.91920 0.91855 0.92138 0.92147 0.92201 0.91908 0.91734 0.89393 0.92311 0.92444 0.90119 0.76918 0.89417 0.89435 0.91873 0.91875 0.93559 0.93566 0.96614 0.96614 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.67 37.16 0.32 -0.63 16 2 C -0.09 -0.65 2.00 -90.62 -0.18 -0.83 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.75 5.03 -26.73 -0.13 -0.89 16 5 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 6 C -0.12 -1.09 5.77 -26.73 -0.15 -1.24 16 7 C -0.13 -1.36 4.52 -26.73 -0.12 -1.48 16 8 C 0.18 1.73 0.35 -131.82 -0.05 1.68 16 9 C -0.17 -1.72 8.05 37.16 0.30 -1.42 16 10 N -0.73 -7.21 3.74 -47.61 -0.18 -7.39 16 11 C 0.51 6.95 7.25 -10.99 -0.08 6.87 16 12 O -0.53 -9.11 12.19 5.55 0.07 -9.04 16 13 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 14 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 21 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.35 6.87 -51.93 -0.36 -0.01 16 28 H 0.06 0.41 6.86 -51.93 -0.36 0.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.66 7.60 -51.93 -0.39 0.26 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.19 6.17 -51.93 -0.32 0.87 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 38 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 39 H 0.40 3.08 6.17 -40.82 -0.25 2.83 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -32.45 361.47 -9.14 -41.59 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.97 Total: -1.69 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.22 Total: -18.94 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.56 Total: -34.40 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.45 -9.14 -41.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590894128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.254 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds