Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.52993 * 109.47392 * 240.00223 * 2 1 3 5 5 C 1.53002 * 109.47392 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46886 * 59.99543 * 5 4 2 7 7 C 1.53002 * 109.47351 * 300.00003 * 6 5 4 8 8 C 1.52996 * 109.47217 * 119.99575 * 2 1 3 9 9 C 1.53008 * 109.46896 * 60.00199 * 8 2 1 10 10 N 1.46500 * 109.47364 * 300.00445 * 8 2 1 11 11 C 1.34779 * 120.00169 * 179.97438 * 10 8 2 12 12 O 1.21282 * 119.99922 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00037 * 180.02562 * 11 10 8 14 14 C 1.53006 * 109.46866 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.47000 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47240 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99861 * 180.02562 * 17 16 15 20 20 N 1.31522 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99980 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47229 * 89.99965 * 21 19 17 23 23 H 1.48500 * 109.46876 * 209.99805 * 21 19 17 24 24 H 1.48499 * 109.47161 * 329.99530 * 21 19 17 25 25 H 1.09001 * 109.47142 * 300.00053 * 1 2 3 26 26 H 1.09002 * 109.46639 * 59.99744 * 1 2 3 27 27 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46862 * 299.99865 * 4 2 1 29 29 H 1.09002 * 109.47722 * 59.99815 * 4 2 1 30 30 H 1.08998 * 109.47387 * 179.97438 * 5 4 2 31 31 H 1.09001 * 109.47248 * 300.00236 * 5 4 2 32 32 H 1.08996 * 109.47261 * 60.00578 * 6 5 4 33 33 H 1.09000 * 109.46866 * 180.02562 * 6 5 4 34 34 H 1.08992 * 109.46974 * 300.00321 * 7 6 5 35 35 H 1.08992 * 109.47063 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47188 * 299.99992 * 9 8 2 37 37 H 1.09001 * 109.46630 * 60.00143 * 9 8 2 38 38 H 1.09002 * 109.47288 * 179.97438 * 9 8 2 39 39 H 0.96996 * 119.99986 * 359.97438 * 10 8 2 40 40 H 1.09000 * 109.47247 * 60.00371 * 13 11 10 41 41 H 1.09001 * 109.47358 * 299.99798 * 13 11 10 42 42 H 1.08993 * 109.46955 * 300.00219 * 14 13 11 43 43 H 1.09000 * 109.47050 * 60.00048 * 14 13 11 44 44 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 45 45 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 46 46 H 1.09004 * 109.47107 * 300.00294 * 16 15 14 47 47 H 1.09000 * 109.46866 * 60.00185 * 16 15 14 48 48 H 0.96992 * 120.00038 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2495 6 6 4.0806 -1.4415 -0.0002 7 6 3.5706 -0.7202 1.2491 8 6 2.0400 -0.7211 1.2493 9 6 1.5300 -2.1637 1.2493 10 7 1.5517 -0.0305 2.4454 11 6 1.8768 -0.4912 3.6696 12 8 2.5742 -1.4773 3.7809 13 6 1.3740 0.2188 4.9000 14 6 1.8842 -0.5024 6.1493 15 6 1.3741 0.2190 7.3984 16 6 1.8848 -0.5018 8.6478 17 6 1.3819 0.2083 9.8782 18 1 0.7599 1.0856 9.7791 19 6 1.7159 -0.2621 11.1304 20 7 2.4729 -1.3308 11.2512 21 14 1.0920 0.6177 12.6556 22 1 -0.2152 0.0406 13.0600 23 1 2.0705 0.4485 13.7597 24 1 0.9247 2.0632 12.3597 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6767 -1.7489 -1.2492 29 1 1.6768 -0.2074 -2.1392 30 1 3.9335 -1.2348 -2.1392 31 1 3.9331 0.3072 -1.2497 32 1 3.7177 -2.4692 0.0001 33 1 5.1706 -1.4407 -0.0002 34 1 3.9335 0.3075 1.2488 35 1 3.9346 -1.2335 2.1390 36 1 0.4400 -2.1638 1.2493 37 1 1.8935 -2.6775 0.3593 38 1 1.8937 -2.6777 2.1391 39 1 0.9943 0.7583 2.3564 40 1 0.2840 0.2187 4.8996 41 1 1.7372 1.2465 4.9004 42 1 1.5214 -1.5301 6.1491 43 1 2.9742 -0.5018 6.1494 44 1 1.7373 1.2466 7.3984 45 1 0.2841 0.2188 7.3985 46 1 1.5220 -1.5297 8.6481 47 1 2.9748 -0.5012 8.6475 48 1 2.7082 -1.6614 12.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590894129.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = -86.645598 kcal Electronic energy + Delta-G solvation = -22603.651066 eV Core-core repulsion = 19463.485627 eV Total energy + Delta-G solvation = -3140.165439 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82563 -38.54543 -34.91436 -34.34632 -32.76541 -32.61245 -30.91364 -29.27972 -27.82553 -26.12231 -25.46945 -23.14048 -22.01337 -21.40163 -19.98474 -19.85018 -18.79653 -17.10619 -16.33249 -16.06357 -15.61919 -15.28629 -14.71223 -14.57328 -14.37999 -14.02278 -13.70247 -13.58060 -13.15986 -12.86415 -12.57426 -12.39364 -12.28980 -12.21778 -12.05904 -11.64747 -11.54407 -11.51155 -11.29607 -11.02877 -10.95878 -10.76238 -10.56598 -10.49211 -10.47868 -10.37649 -10.34261 -9.57771 -9.46357 -9.14043 -9.00362 -8.93728 -8.28311 -5.93148 -3.95582 2.82204 3.17863 3.35367 3.41291 3.44597 4.28331 4.36806 4.50617 4.53538 4.77258 4.87211 4.95318 5.03014 5.10684 5.13530 5.20684 5.34848 5.38085 5.41127 5.41703 5.43899 5.51564 5.58595 5.70374 5.70840 5.72298 5.83160 5.88518 5.91813 5.93387 6.03233 6.10189 6.18523 6.24178 6.35507 6.37407 6.56388 6.62164 6.88460 7.06493 7.23642 7.58482 7.76673 7.93173 8.08664 8.39302 8.50512 9.12250 9.67945 11.18226 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.042079 B = 0.002584 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.262286 B =10831.554376 C =11159.754568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.130 4.130 8 C 0.184 3.816 9 C -0.168 4.168 10 N -0.732 5.732 11 C 0.514 3.486 12 O -0.531 6.531 13 C -0.140 4.140 14 C -0.102 4.102 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.396 0.604 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.015 0.985 47 H 0.016 0.984 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 3.169 -28.479 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.169 4.169 8 C 0.098 3.902 9 C -0.226 4.226 10 N -0.385 5.385 11 C 0.302 3.698 12 O -0.407 6.407 13 C -0.180 4.180 14 C -0.140 4.140 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.231 0.769 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.498 2.337 -28.251 28.387 hybrid contribution -0.620 0.922 0.853 1.401 sum -2.118 3.259 -27.398 27.672 Atomic orbital electron populations 1.21919 0.94847 1.02455 1.01650 1.21354 0.95897 0.99655 0.94224 0.90813 1.21607 0.95702 1.01015 0.96665 1.21578 0.95468 1.00840 0.98012 1.21565 1.00309 0.99740 0.94005 1.21961 0.94338 1.01040 0.99542 1.20220 0.93710 0.92525 0.83748 1.22361 1.00882 0.95765 1.03559 1.46290 1.54551 1.32171 1.05472 1.21004 0.79717 0.84559 0.84550 1.90636 1.37263 1.26122 1.86691 1.21806 1.02258 1.00764 0.93206 1.21429 1.01139 0.99407 0.92004 1.21649 0.99428 0.98877 0.94845 1.19096 0.96440 0.95597 0.90585 1.21290 1.31131 1.12205 0.91165 0.92781 1.25045 0.95292 0.95126 0.99139 1.69977 1.36991 1.23177 1.23369 0.86613 0.78565 0.80033 0.82887 1.20714 1.21259 1.19933 0.92564 0.92536 0.91998 0.91331 0.91773 0.92009 0.92065 0.91515 0.91930 0.92311 0.89415 0.92627 0.91668 0.90266 0.76917 0.89369 0.89373 0.91861 0.91866 0.93550 0.93552 0.96621 0.96603 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.67 37.16 0.32 -0.65 16 2 C -0.09 -0.66 2.07 -90.62 -0.19 -0.85 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -0.73 4.93 -26.73 -0.13 -0.86 16 5 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 6 C -0.12 -1.01 5.65 -26.73 -0.15 -1.16 16 7 C -0.13 -1.38 4.66 -26.70 -0.12 -1.51 16 8 C 0.18 1.76 0.49 -131.79 -0.07 1.69 16 9 C -0.17 -1.76 7.36 37.16 0.27 -1.49 16 10 N -0.73 -7.45 4.81 -47.58 -0.23 -7.68 16 11 C 0.51 7.06 7.25 -10.99 -0.08 6.98 16 12 O -0.53 -9.21 12.19 5.56 0.07 -9.14 16 13 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 14 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 18 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 21 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.06 0.35 6.86 -51.93 -0.36 -0.01 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 28 H 0.07 0.46 6.43 -51.93 -0.33 0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.21 6.17 -51.93 -0.32 0.89 16 36 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 37 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 38 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 39 H 0.40 3.05 7.32 -40.82 -0.30 2.75 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -32.65 358.19 -9.08 -41.73 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.76 Total: -1.48 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.27 Total: -18.84 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.51 Total: -34.73 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.65 -9.08 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590894129.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.917 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds