Wall clock time and date at job start Tue Mar 31 2020 05:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.53005 * 109.46982 * 119.99652 * 2 1 3 5 5 C 1.52999 * 109.47159 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47317 * 300.00546 * 5 4 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 4 8 8 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 9 9 C 1.53006 * 109.47127 * 299.99835 * 8 2 1 10 10 N 1.46492 * 109.47244 * 60.00207 * 8 2 1 11 11 C 1.34777 * 120.00147 * 179.97438 * 10 8 2 12 12 O 1.21280 * 120.00103 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00115 * 179.97438 * 11 10 8 14 14 C 1.53002 * 109.46958 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46978 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47232 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47212 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00098 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00050 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00163 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47177 * 89.99626 * 21 19 17 23 23 H 1.48505 * 109.47036 * 209.99911 * 21 19 17 24 24 H 1.48499 * 109.46776 * 329.99400 * 21 19 17 25 25 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 27 27 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 28 28 H 1.09000 * 109.47360 * 300.00293 * 4 2 1 29 29 H 1.09002 * 109.46935 * 60.00267 * 4 2 1 30 30 H 1.08996 * 109.46929 * 179.97438 * 5 4 2 31 31 H 1.09002 * 109.46716 * 60.00455 * 5 4 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 33 33 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 34 34 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 35 35 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46801 * 300.00272 * 9 8 2 37 37 H 1.08998 * 109.46505 * 59.99871 * 9 8 2 38 38 H 1.09000 * 109.47050 * 180.02562 * 9 8 2 39 39 H 0.97003 * 120.00212 * 359.97438 * 10 8 2 40 40 H 1.09001 * 109.47380 * 299.99913 * 13 11 10 41 41 H 1.09002 * 109.47060 * 60.00000 * 13 11 10 42 42 H 1.08998 * 109.47387 * 300.00682 * 14 13 11 43 43 H 1.09002 * 109.46838 * 60.00677 * 14 13 11 44 44 H 1.09001 * 109.47375 * 300.00092 * 15 14 13 45 45 H 1.09002 * 109.47045 * 60.00167 * 15 14 13 46 46 H 1.09001 * 109.47289 * 299.99925 * 16 15 14 47 47 H 1.09002 * 109.47153 * 60.00008 * 16 15 14 48 48 H 0.96991 * 120.00258 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0002 7 6 3.5696 -0.7221 -1.2494 8 6 2.0400 -0.7212 -1.2492 9 6 1.5300 -2.1638 -1.2492 10 7 1.5518 -0.0307 -2.4453 11 6 1.8778 -0.4908 -3.6694 12 8 2.5750 -1.4769 -3.7807 13 6 1.3750 0.2193 -4.8999 14 6 1.8862 -0.5012 -6.1491 15 6 1.3753 0.2193 -7.3984 16 6 1.8859 -0.5015 -8.6476 17 6 1.3832 0.2086 -9.8781 18 1 0.7613 1.0859 -9.7790 19 6 1.7172 -0.2619 -11.1303 20 7 1.2780 0.3575 -12.2042 21 14 2.7923 -1.7799 -11.3017 22 1 1.9346 -2.9913 -11.3478 23 1 3.5847 -1.6864 -12.5542 24 1 3.7123 -1.8686 -10.1394 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6766 -0.2074 2.1393 29 1 1.6767 -1.7489 1.2493 30 1 3.9332 -1.2352 2.1393 31 1 3.9336 0.3058 1.2489 32 1 3.7159 -2.4709 0.0000 33 1 5.1695 -1.4433 -0.0005 34 1 3.9332 0.3054 -1.2496 35 1 3.9323 -1.2364 -2.1394 36 1 1.8934 -2.6776 -0.3592 37 1 0.4401 -2.1637 -1.2492 38 1 1.8938 -2.6778 -2.1389 39 1 0.9938 0.7578 -2.3564 40 1 0.2850 0.2185 -4.9001 41 1 1.7376 1.2472 -4.8999 42 1 2.9762 -0.5001 -6.1488 43 1 1.5239 -1.5293 -6.1494 44 1 0.2853 0.2177 -7.3985 45 1 1.7372 1.2475 -7.3983 46 1 2.9759 -0.5003 -8.6478 47 1 1.5237 -1.5296 -8.6475 48 1 1.5133 0.0268 -13.0851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590894130.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:02 Heat of formation + Delta-G solvation = -83.335833 kcal Electronic energy + Delta-G solvation = -22666.512218 eV Core-core repulsion = 19526.490301 eV Total energy + Delta-G solvation = -3140.021917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88157 -38.60745 -35.05532 -34.40338 -32.80498 -32.58152 -31.04257 -29.64419 -27.86385 -26.24912 -25.66682 -23.10784 -21.90169 -21.38662 -19.99471 -19.91016 -18.84083 -17.16301 -16.64406 -16.24970 -15.70033 -15.33431 -14.75738 -14.60525 -14.19510 -14.09882 -13.78383 -13.63019 -13.21129 -12.92669 -12.63014 -12.48757 -12.35212 -12.28349 -12.18065 -11.99097 -11.70705 -11.56203 -11.34077 -11.08253 -11.06307 -10.80371 -10.70220 -10.60000 -10.50343 -10.40328 -9.84857 -9.65381 -9.60215 -9.25756 -9.09259 -9.05959 -8.47619 -5.98868 -3.96184 2.75379 3.12258 3.36733 3.43591 3.49905 4.24443 4.33207 4.49814 4.51730 4.73271 4.82200 4.90722 4.99254 5.05857 5.09828 5.16546 5.28374 5.31392 5.34056 5.36888 5.37786 5.47939 5.54408 5.66662 5.67110 5.68825 5.78763 5.84627 5.85748 5.88476 5.98702 6.05638 6.07056 6.18598 6.19996 6.32638 6.44360 6.54721 6.71922 6.85969 7.02069 7.40759 7.52549 7.53575 7.86837 8.32547 8.60335 9.06273 9.64615 11.14694 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036573 B = 0.002784 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.415812 B =10053.856253 C =10463.867654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.131 4.131 8 C 0.183 3.817 9 C -0.168 4.168 10 N -0.731 5.731 11 C 0.514 3.486 12 O -0.533 6.533 13 C -0.141 4.141 14 C -0.105 4.105 15 C -0.103 4.103 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.907 5.907 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.397 0.603 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -0.665 30.968 30.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.169 4.169 8 C 0.098 3.902 9 C -0.226 4.226 10 N -0.384 5.384 11 C 0.302 3.698 12 O -0.409 6.409 13 C -0.181 4.181 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.162 -1.388 30.680 30.733 hybrid contribution 0.194 -0.253 -0.205 0.379 sum 1.356 -1.640 30.475 30.549 Atomic orbital electron populations 1.21922 0.94813 1.02458 1.01694 1.21356 0.95923 0.99666 0.94184 0.90782 1.21609 0.95691 1.01012 0.96685 1.21576 0.95481 1.00858 0.97998 1.21563 1.00309 0.99723 0.94012 1.21947 0.94342 1.01061 0.99535 1.20206 0.93727 0.92527 0.83761 1.22363 1.00912 0.95762 1.03536 1.46283 1.54438 1.32208 1.05459 1.20984 0.79692 0.84529 0.84580 1.90629 1.37392 1.26179 1.86726 1.21788 1.02405 1.00828 0.93038 1.21459 1.01115 0.99437 0.92247 1.21476 0.99908 0.98997 0.93651 1.19574 0.96321 0.95791 0.93580 1.21192 1.31789 1.13432 0.89266 0.91128 1.25047 0.95758 0.96937 0.95901 1.69920 1.46070 1.40745 0.97856 0.86770 0.81271 0.83662 0.77578 1.20324 1.21477 1.18889 0.92004 0.92490 0.92556 0.91729 0.91343 0.91993 0.92050 0.91528 0.91932 0.92287 0.89447 0.91643 0.92604 0.90319 0.76842 0.89196 0.89204 0.91854 0.91863 0.92933 0.92904 0.96643 0.97082 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.67 37.16 0.32 -0.61 16 2 C -0.09 -0.63 2.07 -90.62 -0.19 -0.82 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.11 -0.70 4.93 -26.73 -0.13 -0.83 16 5 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 6 C -0.12 -0.97 5.65 -26.73 -0.15 -1.12 16 7 C -0.13 -1.32 4.66 -26.75 -0.12 -1.45 16 8 C 0.18 1.68 0.50 -131.84 -0.07 1.61 16 9 C -0.17 -1.68 7.35 37.16 0.27 -1.41 16 10 N -0.73 -7.08 4.81 -47.63 -0.23 -7.31 16 11 C 0.51 6.72 7.25 -10.98 -0.08 6.64 16 12 O -0.53 -8.82 12.19 5.56 0.07 -8.75 16 13 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 14 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 15 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 16 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 17 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 21 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 25 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.33 6.86 -51.93 -0.36 -0.02 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.15 6.16 -51.93 -0.32 0.83 16 36 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 37 H 0.05 0.53 6.43 -51.93 -0.33 0.20 16 38 H 0.08 1.03 6.17 -51.93 -0.32 0.71 16 39 H 0.40 2.89 7.32 -40.82 -0.30 2.59 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 43 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 47 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -32.92 354.56 -8.70 -41.62 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -8.72 Total: -1.76 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -1.26 Total: -19.18 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.54 Total: -35.14 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.07 Total: -8.75 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.92 -8.70 -41.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590894130.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.719 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds