Wall clock time and date at job start Tue Mar 31 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47195 * 2 1 4 4 C 1.52993 * 109.47459 * 239.99733 * 2 1 3 5 5 C 1.50708 * 109.46859 * 65.72555 * 4 2 1 6 6 H 1.07994 * 120.00306 * 5.08882 * 5 4 2 7 7 C 1.37883 * 119.99798 * 185.07936 * 5 4 2 8 8 N 1.31516 * 120.00165 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99808 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47517 * 60.00007 * 9 7 5 11 11 H 1.48501 * 109.47004 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46949 * 299.99895 * 9 7 5 13 13 N 1.46896 * 109.47164 * 119.99385 * 2 1 3 14 14 C 1.46848 * 111.00103 * 60.71563 * 13 2 1 15 15 C 1.53034 * 109.52986 * 185.83617 * 14 13 2 16 16 C 1.53123 * 109.27680 * 300.82523 * 15 14 13 17 17 C 1.53113 * 109.16266 * 57.65114 * 16 15 14 18 18 H 1.08999 * 109.50564 * 62.32302 * 17 16 15 19 19 C 1.53001 * 109.50198 * 182.40798 * 17 16 15 20 20 C 1.53001 * 109.46991 * 185.96447 * 19 17 16 21 21 H 1.08994 * 110.80741 * 308.83033 * 20 19 17 22 22 C 1.54815 * 110.90545 * 185.20334 * 20 19 17 23 23 C 1.54103 * 104.18824 * 220.92054 * 22 20 19 24 24 O 1.43746 * 107.29000 * 357.97251 * 23 22 20 25 25 C 1.44418 * 107.00295 * 26.49078 * 24 23 22 26 26 C 1.46852 * 110.99580 * 184.96558 * 13 2 1 27 27 H 1.08999 * 109.47358 * 300.00076 * 1 2 3 28 28 H 1.08998 * 109.47605 * 60.00234 * 1 2 3 29 29 H 1.09002 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47824 * 185.72637 * 4 2 1 31 31 H 1.08998 * 109.47483 * 305.73168 * 4 2 1 32 32 H 0.96999 * 120.00148 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.45894 * 65.82076 * 14 13 2 34 34 H 1.09003 * 109.45281 * 305.85258 * 14 13 2 35 35 H 1.08996 * 109.50463 * 180.87986 * 15 14 13 36 36 H 1.09007 * 109.49751 * 60.75881 * 15 14 13 37 37 H 1.09000 * 109.51602 * 297.74062 * 16 15 14 38 38 H 1.08999 * 109.57112 * 177.58794 * 16 15 14 39 39 H 1.09002 * 109.47049 * 305.95980 * 19 17 16 40 40 H 1.08999 * 109.47279 * 65.96116 * 19 17 16 41 41 H 1.08999 * 110.48944 * 339.59804 * 22 20 19 42 42 H 1.09006 * 110.48391 * 102.11555 * 22 20 19 43 43 H 1.08998 * 109.87401 * 117.39883 * 23 22 20 44 44 H 1.08999 * 109.87585 * 238.54750 * 23 22 20 45 45 H 1.09001 * 110.64802 * 201.48362 * 25 24 23 46 46 H 1.08993 * 110.60318 * 78.47001 * 25 24 23 47 47 H 1.08997 * 109.49610 * 54.16478 * 26 13 2 48 48 H 1.09004 * 109.42906 * 294.19090 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6567 0.0663 -2.4756 6 1 1.1775 1.0285 -2.3716 7 6 1.9181 -0.4417 -3.7305 8 7 2.5013 -1.6136 -3.8572 9 14 1.4437 0.5348 -5.2506 10 1 2.1478 1.8421 -5.2390 11 1 1.8291 -0.2248 -6.4671 12 1 -0.0237 0.7630 -5.2544 13 7 2.0196 -0.6923 1.1995 14 6 1.5628 -2.0877 1.2250 15 6 1.9667 -2.7340 2.5521 16 6 3.4894 -2.6730 2.7013 17 6 3.9440 -1.2130 2.6229 18 1 3.5074 -0.6511 3.4486 19 6 5.4701 -1.1478 2.7110 20 6 5.9148 0.3144 2.7824 21 1 5.4617 0.8965 1.9800 22 6 7.4584 0.4250 2.7414 23 6 7.7863 1.5193 3.7757 24 8 6.5369 2.0017 4.2980 25 6 5.5812 0.9270 4.1666 26 6 3.4827 -0.6099 1.2941 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1251 -0.8109 -1.1994 31 1 1.5953 -1.7150 -1.3020 32 1 2.6848 -1.9711 -4.7401 33 1 2.0203 -2.6348 0.4006 34 1 0.4780 -2.1165 1.1223 35 1 1.6412 -3.7742 2.5643 36 1 1.4985 -2.1958 3.3763 37 1 3.9570 -3.2438 1.8991 38 1 3.7791 -3.0935 3.6643 39 1 5.8052 -1.6735 3.6051 40 1 5.9053 -1.6173 1.8288 41 1 7.9165 -0.5213 3.0290 42 1 7.7932 0.7236 1.7480 43 1 8.3875 1.0990 4.5819 44 1 8.3263 2.3345 3.2942 45 1 4.5626 1.3148 4.1792 46 1 5.7221 0.1896 4.9567 47 1 3.7924 0.4338 1.2420 48 1 3.9312 -1.1634 0.4690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591022894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:39 Heat of formation + Delta-G solvation = -74.057224 kcal Electronic energy + Delta-G solvation = -23428.773736 eV Core-core repulsion = 20289.154169 eV Total energy + Delta-G solvation = -3139.619566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.82187 -38.78683 -35.62807 -33.58581 -32.41617 -30.91986 -29.89440 -28.97402 -27.03099 -25.61103 -24.01487 -23.07055 -22.82334 -21.84635 -20.27457 -19.54774 -18.47449 -16.64881 -16.44151 -15.83357 -15.32661 -15.28598 -14.68261 -14.56031 -14.02523 -13.81924 -13.46784 -13.38293 -13.07220 -12.89526 -12.74618 -12.26735 -12.19947 -11.83359 -11.64301 -11.60927 -11.30156 -11.05825 -10.95125 -10.89487 -10.74817 -10.64569 -10.63619 -10.37397 -10.32052 -9.92144 -9.81872 -9.76855 -9.71944 -9.53134 -9.09395 -8.35592 -7.41041 -6.01561 -4.03476 3.31599 3.36170 3.38656 3.85844 4.39183 4.44908 4.60560 4.63158 4.79141 4.93428 5.07239 5.15652 5.18890 5.23432 5.33815 5.41287 5.51489 5.57778 5.65387 5.68272 5.69038 5.81146 5.82946 5.90832 5.93870 6.00629 6.06877 6.13468 6.15443 6.20383 6.23508 6.30983 6.40335 6.44341 6.50843 6.54278 6.69692 6.78172 6.85684 6.99304 7.05010 7.58444 7.61039 7.75806 7.92757 8.01149 8.43669 9.02767 9.60080 11.09481 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.004392 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.054918 B = 6374.154960 C = 7282.855658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.080 3.920 3 H 0.067 0.933 4 C -0.001 4.001 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.536 5.536 14 C 0.050 3.950 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.083 4.083 18 H 0.074 0.926 19 C -0.102 4.102 20 C -0.123 4.123 21 H 0.092 0.908 22 C -0.154 4.154 23 C 0.047 3.953 24 O -0.382 6.382 25 C 0.052 3.948 26 C 0.060 3.940 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.012 0.988 31 H 0.021 0.979 32 H 0.260 0.740 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -0.207 15.729 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.027 4.027 3 H 0.085 0.915 4 C -0.040 4.040 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.260 5.260 14 C -0.079 4.079 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.102 4.102 18 H 0.092 0.908 19 C -0.140 4.140 20 C -0.141 4.141 21 H 0.110 0.890 22 C -0.192 4.192 23 C -0.030 4.030 24 O -0.301 6.301 25 C -0.024 4.024 26 C -0.068 4.068 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.266 0.116 16.095 17.272 hybrid contribution 0.252 -0.220 -1.892 1.921 sum 6.518 -0.104 14.204 15.628 Atomic orbital electron populations 1.21721 0.95449 1.00951 1.00463 1.21817 0.94933 0.97493 0.88476 0.91509 1.19672 0.96075 0.96354 0.91859 1.21135 1.39036 1.04314 0.90817 0.92634 1.25005 0.95266 0.94963 0.99084 1.69954 1.42611 1.17658 1.23338 0.86697 0.78993 0.80112 0.82450 1.20263 1.21359 1.20220 1.62291 1.09611 1.13798 1.40322 1.22080 1.00452 0.89328 0.95991 1.21577 0.95552 0.99665 0.98441 1.21602 0.96314 0.96221 1.01006 1.21210 0.93878 0.96330 0.98807 0.90751 1.21583 0.95866 0.94483 1.02089 1.22823 0.94823 0.97775 0.98694 0.88961 1.23016 0.96434 0.99388 1.00340 1.23126 0.87247 0.97015 0.95586 1.88865 1.20386 1.37245 1.83639 1.23674 0.93786 0.89305 0.95673 1.22087 0.88820 1.00368 0.95554 0.94234 0.91719 0.93551 0.96999 0.96050 0.93037 0.94168 0.90939 0.92269 0.91746 0.92271 0.92559 0.91881 0.91422 0.90714 0.90402 0.92758 0.90126 0.88744 0.92343 0.91383 0.94127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.81 37.15 0.33 -2.14 16 2 C 0.08 1.66 2.37 -67.72 -0.16 1.50 16 3 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 4 C 0.00 -0.04 3.70 -27.88 -0.10 -0.14 16 5 C -0.51 -14.24 8.32 -34.43 -0.29 -14.53 16 6 H 0.06 1.50 7.30 -52.49 -0.38 1.11 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.54 -9.55 4.64 -226.69 -1.05 -10.60 16 14 C 0.05 0.84 4.64 -3.83 -0.02 0.82 16 15 C -0.11 -1.54 6.09 -26.65 -0.16 -1.71 16 16 C -0.11 -1.43 5.29 -26.61 -0.14 -1.57 16 17 C -0.08 -1.07 2.30 -90.54 -0.21 -1.27 16 18 H 0.07 0.94 7.50 -51.93 -0.39 0.55 16 19 C -0.10 -1.12 4.07 -26.73 -0.11 -1.23 16 20 C -0.12 -1.36 2.99 -88.61 -0.26 -1.62 16 21 H 0.09 1.17 6.37 -51.93 -0.33 0.84 16 22 C -0.15 -1.50 6.60 -25.20 -0.17 -1.67 16 23 C 0.05 0.47 7.70 37.73 0.29 0.76 16 24 O -0.38 -4.88 11.52 -35.23 -0.41 -5.29 16 25 C 0.05 0.57 6.58 38.21 0.25 0.83 16 26 C 0.06 0.98 4.10 -3.83 -0.02 0.97 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.31 7.11 -51.93 -0.37 0.94 16 29 H 0.05 0.88 6.30 -51.93 -0.33 0.55 16 30 H 0.01 0.32 6.39 -51.93 -0.33 -0.01 16 31 H 0.02 0.58 6.85 -51.93 -0.36 0.23 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.04 0.78 6.75 -51.93 -0.35 0.43 16 34 H 0.07 1.23 6.03 -51.93 -0.31 0.92 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.60 7.98 -51.93 -0.41 0.19 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.04 8.03 -51.93 -0.42 0.63 16 46 H 0.06 0.58 7.93 -51.93 -0.41 0.17 16 47 H 0.07 1.12 6.44 -51.93 -0.33 0.79 16 48 H 0.04 0.77 6.60 -51.93 -0.34 0.43 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -29.66 354.41 -10.10 -39.76 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.84 Total: -0.33 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.86 Total: -19.45 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.32 Total: -36.59 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.41 Total: -5.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.66 -10.10 -39.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591022894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.294 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds