Wall clock time and date at job start Tue Mar 31 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47142 * 2 1 4 4 C 1.53003 * 109.47296 * 239.99748 * 2 1 3 5 5 C 1.50700 * 109.47005 * 175.54941 * 4 2 1 6 6 H 1.07995 * 120.00271 * 4.86902 * 5 4 2 7 7 C 1.37872 * 119.99830 * 184.87333 * 5 4 2 8 8 N 1.31515 * 120.00281 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00144 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47242 * 89.99884 * 9 7 5 11 11 H 1.48499 * 109.47194 * 209.99615 * 9 7 5 12 12 H 1.48497 * 109.47033 * 329.99575 * 9 7 5 13 13 N 1.46910 * 109.47349 * 119.99883 * 2 1 3 14 14 C 1.46842 * 110.99625 * 58.42333 * 13 2 1 15 15 C 1.53042 * 109.52051 * 174.16302 * 14 13 2 16 16 C 1.53115 * 109.27957 * 59.18113 * 15 14 13 17 17 C 1.53116 * 109.16039 * 302.34968 * 16 15 14 18 18 H 1.09000 * 109.50054 * 297.66849 * 17 16 15 19 19 C 1.53008 * 109.50350 * 177.59500 * 17 16 15 20 20 C 1.52997 * 109.47253 * 65.07573 * 19 17 16 21 21 H 1.09003 * 110.43345 * 305.70293 * 20 19 17 22 22 C 1.54809 * 110.48867 * 183.15809 * 20 19 17 23 23 C 1.55346 * 101.93058 * 220.33883 * 22 20 19 24 24 O 1.44378 * 103.50375 * 37.04914 * 23 22 20 25 25 C 1.43740 * 106.97721 * 319.91187 * 24 23 22 26 26 C 1.46848 * 110.99121 * 294.17765 * 13 2 1 27 27 H 1.09004 * 109.47388 * 299.99780 * 1 2 3 28 28 H 1.08998 * 109.47322 * 60.00188 * 1 2 3 29 29 H 1.09005 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47175 * 295.54823 * 4 2 1 31 31 H 1.09001 * 109.46540 * 55.54851 * 4 2 1 32 32 H 0.97002 * 120.00501 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46177 * 54.15003 * 14 13 2 34 34 H 1.08993 * 109.46098 * 294.17265 * 14 13 2 35 35 H 1.09003 * 109.49920 * 299.23896 * 15 14 13 36 36 H 1.09001 * 109.53748 * 179.14635 * 15 14 13 37 37 H 1.09001 * 109.52496 * 182.44150 * 16 15 14 38 38 H 1.09007 * 109.57268 * 62.28209 * 16 15 14 39 39 H 1.08995 * 109.46881 * 305.07222 * 19 17 16 40 40 H 1.09000 * 109.46801 * 185.07540 * 19 17 16 41 41 H 1.09000 * 110.90480 * 338.50298 * 22 20 19 42 42 H 1.08998 * 110.91002 * 102.11172 * 22 20 19 43 43 H 1.09002 * 110.64145 * 278.53484 * 23 22 20 44 44 H 1.09001 * 110.72062 * 155.61264 * 23 22 20 45 45 H 1.09000 * 109.87359 * 267.08783 * 25 24 23 46 46 H 1.09000 * 110.00609 * 146.00332 * 25 24 23 47 47 H 1.09000 * 109.43129 * 65.80351 * 26 13 2 48 48 H 1.09002 * 109.49952 * 305.83273 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5430 -0.6265 -1.3055 6 1 4.0864 -0.1734 -0.4897 7 6 4.2242 -1.1182 -2.3987 8 7 3.5625 -1.6704 -3.3921 9 14 6.0873 -1.0014 -2.4682 10 1 6.6826 -2.2191 -1.8616 11 1 6.5238 -0.8893 -3.8832 12 1 6.5365 0.1971 -1.7152 13 7 2.0197 -0.6925 1.1995 14 6 1.5183 -2.0717 1.2524 15 6 2.1620 -2.8049 2.4315 16 6 1.8231 -2.0687 3.7305 17 6 2.3129 -0.6214 3.6304 18 1 3.3969 -0.6112 3.5169 19 6 1.9251 0.1381 4.9008 20 6 2.6691 -0.4569 6.0979 21 1 2.4910 -1.5304 6.1614 22 6 2.2341 0.2429 7.4086 23 6 3.5842 0.3747 8.1656 24 8 4.5331 0.6602 7.1155 25 6 4.1787 -0.1658 5.9937 26 6 1.6657 0.0491 2.4165 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.7433 -1.7694 -1.2102 31 1 1.6130 -0.2556 -2.1374 32 1 4.0418 -2.0161 -4.1614 33 1 1.7696 -2.5853 0.3244 34 1 0.4358 -2.0599 1.3793 35 1 3.2436 -2.8290 2.2983 36 1 1.7785 -3.8241 2.4801 37 1 2.3153 -2.5627 4.5683 38 1 0.7440 -2.0782 3.8849 39 1 0.8505 0.0524 5.0616 40 1 2.1934 1.1890 4.7919 41 1 1.8056 1.2236 7.2021 42 1 1.5323 -0.3772 7.9662 43 1 3.8364 -0.5597 8.6670 44 1 3.5461 1.1952 8.8821 45 1 4.7396 -1.0997 6.0294 46 1 4.3916 0.3590 5.0623 47 1 0.5824 0.0515 2.5375 48 1 2.0240 1.0753 2.3344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591022895.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:41 Heat of formation + Delta-G solvation = -68.820676 kcal Electronic energy + Delta-G solvation = -23382.639018 eV Core-core repulsion = 20243.246526 eV Total energy + Delta-G solvation = -3139.392493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.92001 -38.81589 -35.70677 -33.38542 -32.32075 -31.05248 -29.86567 -28.87278 -27.28249 -25.72483 -24.09601 -23.12112 -22.59286 -21.80814 -20.54897 -19.29300 -18.51138 -16.73086 -16.23543 -16.11285 -15.54062 -15.09089 -14.62052 -14.44761 -14.06714 -13.96958 -13.74181 -13.37090 -13.13891 -12.80384 -12.72472 -12.19024 -12.11103 -11.84666 -11.73418 -11.60699 -11.41819 -11.25262 -11.11983 -10.88340 -10.80355 -10.69020 -10.55912 -10.38579 -10.30721 -10.08328 -9.81825 -9.78477 -9.68225 -9.09591 -8.93702 -8.23364 -7.40115 -5.86822 -3.84489 3.41031 3.46960 3.51605 3.79797 4.29326 4.43965 4.58242 4.68118 4.70284 4.95914 4.98755 5.07444 5.16457 5.21173 5.33532 5.45374 5.48527 5.50061 5.56172 5.67345 5.68889 5.75338 5.80362 5.83434 5.88267 5.89171 5.92067 5.96266 6.00902 6.08324 6.14324 6.16875 6.27364 6.37872 6.50146 6.51664 6.65760 6.72907 6.75066 6.82321 7.01908 7.59521 7.74054 7.98343 8.07513 8.15786 8.61481 9.22700 9.77528 11.25188 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.004184 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.296388 B = 6690.295166 C = 7513.061593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.510 5.510 14 C 0.056 3.944 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.086 4.086 18 H 0.080 0.920 19 C -0.103 4.103 20 C -0.121 4.121 21 H 0.085 0.915 22 C -0.152 4.152 23 C 0.045 3.955 24 O -0.381 6.381 25 C 0.048 3.952 26 C 0.060 3.940 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.016 0.984 31 H 0.021 0.979 32 H 0.257 0.743 33 H 0.089 0.911 34 H 0.020 0.980 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.023 0.977 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 1.285 20.400 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.008 4.008 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.233 5.233 14 C -0.072 4.072 15 C -0.155 4.155 16 C -0.149 4.149 17 C -0.105 4.105 18 H 0.098 0.902 19 C -0.141 4.141 20 C -0.140 4.140 21 H 0.103 0.897 22 C -0.189 4.189 23 C -0.032 4.032 24 O -0.300 6.300 25 C -0.028 4.028 26 C -0.069 4.069 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.109 0.891 47 H 0.041 0.959 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.801 1.337 20.196 20.802 hybrid contribution -0.107 -0.186 -0.134 0.253 sum -4.908 1.151 20.062 20.686 Atomic orbital electron populations 1.22518 0.99966 1.01183 1.00571 1.21910 0.89909 0.98429 0.91869 0.91291 1.19229 0.96438 0.95128 0.90030 1.21200 0.91733 1.37029 1.02855 0.91975 1.25011 0.97959 0.95992 0.95941 1.69965 1.35155 1.41203 1.08275 0.86639 0.86495 0.78345 0.76745 1.20945 1.21655 1.19995 1.61992 1.59210 1.01306 1.00838 1.22084 0.95346 0.90381 0.99408 1.21584 1.02062 0.97699 0.94110 1.21642 1.00103 0.95455 0.97714 1.21241 1.01439 0.94609 0.93216 0.90181 1.21642 0.99680 0.99608 0.93191 1.22601 0.95284 1.01011 0.95106 0.89689 1.23273 0.97903 1.01707 0.96043 1.23587 0.87613 1.00855 0.91121 1.88875 1.53004 1.63931 1.24165 1.23337 0.94042 0.95079 0.90362 1.22070 0.96778 0.97551 0.90458 0.94204 0.92641 0.93025 0.96581 0.96088 0.93358 0.89290 0.96177 0.91018 0.92423 0.92507 0.92860 0.91913 0.91558 0.90382 0.90436 0.92450 0.89289 0.92495 0.89127 0.95857 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.50 37.15 0.32 -2.87 16 2 C 0.09 1.77 2.30 -67.71 -0.16 1.61 16 3 H 0.07 1.45 8.07 -51.93 -0.42 1.03 16 4 C 0.03 0.73 4.27 -27.88 -0.12 0.61 16 5 C -0.49 -13.71 8.83 -34.44 -0.30 -14.01 16 6 H 0.06 1.75 7.73 -52.49 -0.41 1.34 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.51 -9.52 4.32 -226.69 -0.98 -10.50 16 14 C 0.06 0.98 4.63 -3.83 -0.02 0.96 16 15 C -0.12 -1.72 6.09 -26.65 -0.16 -1.88 16 16 C -0.11 -1.37 5.00 -26.61 -0.13 -1.50 16 17 C -0.09 -1.10 2.24 -90.54 -0.20 -1.30 16 18 H 0.08 1.13 6.89 -51.93 -0.36 0.77 16 19 C -0.10 -1.06 3.88 -26.73 -0.10 -1.17 16 20 C -0.12 -1.14 2.90 -89.09 -0.26 -1.40 16 21 H 0.08 0.76 6.45 -51.93 -0.33 0.43 16 22 C -0.15 -1.22 6.73 -24.53 -0.17 -1.39 16 23 C 0.04 0.39 7.73 38.40 0.30 0.69 16 24 O -0.38 -4.64 11.52 -35.23 -0.41 -5.05 16 25 C 0.05 0.53 6.88 37.73 0.26 0.79 16 26 C 0.06 0.91 4.33 -3.83 -0.02 0.89 16 27 H 0.04 0.61 6.67 -51.93 -0.35 0.27 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.89 6.51 -51.93 -0.34 0.56 16 30 H 0.02 0.43 6.10 -51.93 -0.32 0.11 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.09 1.84 5.97 -51.93 -0.31 1.53 16 34 H 0.02 0.34 6.61 -51.93 -0.34 -0.01 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.61 6.59 -51.93 -0.34 0.27 16 38 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.06 6.85 -51.93 -0.36 0.70 16 47 H 0.02 0.34 6.75 -51.93 -0.35 -0.01 16 48 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -30.18 354.74 -10.02 -40.20 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.83 Total: -1.95 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -0.86 Total: -18.62 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.24 Total: -37.09 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.41 Total: -5.05 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.18 -10.02 -40.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591022895.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.623 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds