Wall clock time and date at job start Tue Mar 31 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47063 * 2 1 4 4 C 1.52994 * 109.46969 * 240.00189 * 2 1 3 5 5 C 1.50705 * 109.46920 * 175.54921 * 4 2 1 6 6 H 1.07995 * 120.00203 * 5.02175 * 5 4 2 7 7 C 1.37876 * 119.99717 * 185.01506 * 5 4 2 8 8 N 1.31515 * 119.99707 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00261 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47609 * 89.99442 * 9 7 5 11 11 H 1.48506 * 109.46905 * 209.99780 * 9 7 5 12 12 H 1.48504 * 109.46814 * 329.99043 * 9 7 5 13 13 N 1.46895 * 109.47065 * 119.99781 * 2 1 3 14 14 C 1.46847 * 111.00224 * 294.22063 * 13 2 1 15 15 C 1.53040 * 109.52529 * 185.84008 * 14 13 2 16 16 C 1.53113 * 109.27671 * 300.81889 * 15 14 13 17 17 C 1.53123 * 109.16425 * 57.65059 * 16 15 14 18 18 H 1.09005 * 109.53071 * 62.30612 * 17 16 15 19 19 C 1.52992 * 109.50376 * 182.40592 * 17 16 15 20 20 C 1.53003 * 109.47098 * 294.80106 * 19 17 16 21 21 H 1.08998 * 110.80104 * 51.37990 * 20 19 17 22 22 C 1.54811 * 110.90542 * 175.00020 * 20 19 17 23 23 C 1.54101 * 104.18694 * 139.11923 * 22 20 19 24 24 O 1.43748 * 107.42012 * 1.95467 * 23 22 20 25 25 C 1.44577 * 106.86876 * 333.67268 * 24 23 22 26 26 C 1.46847 * 110.99892 * 58.42628 * 13 2 1 27 27 H 1.09006 * 109.47244 * 300.00335 * 1 2 3 28 28 H 1.09009 * 109.47312 * 59.99964 * 1 2 3 29 29 H 1.08991 * 109.47305 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46931 * 295.54361 * 4 2 1 31 31 H 1.08991 * 109.47584 * 55.54948 * 4 2 1 32 32 H 0.97009 * 119.99924 * 180.02562 * 8 7 5 33 33 H 1.09010 * 109.45800 * 305.85196 * 14 13 2 34 34 H 1.08996 * 109.46569 * 65.82242 * 14 13 2 35 35 H 1.09001 * 109.49971 * 60.75944 * 15 14 13 36 36 H 1.08999 * 109.50403 * 180.83839 * 15 14 13 37 37 H 1.09004 * 109.51994 * 297.75034 * 16 15 14 38 38 H 1.09000 * 109.52648 * 177.55945 * 16 15 14 39 39 H 1.09005 * 109.47129 * 174.81266 * 19 17 16 40 40 H 1.08998 * 109.47793 * 54.80519 * 19 17 16 41 41 H 1.09000 * 110.49158 * 20.44188 * 22 20 19 42 42 H 1.09007 * 110.60262 * 257.84966 * 22 20 19 43 43 H 1.08996 * 109.87939 * 121.45254 * 23 22 20 44 44 H 1.09006 * 109.87730 * 242.45655 * 23 22 20 45 45 H 1.09001 * 110.50655 * 281.38169 * 25 24 23 46 46 H 1.09002 * 110.77506 * 158.50857 * 25 24 23 47 47 H 1.08998 * 109.46199 * 54.14457 * 26 13 2 48 48 H 1.08994 * 109.45425 * 294.17179 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5430 -0.6264 -1.3056 6 1 4.0866 -0.1755 -0.4886 7 6 4.2239 -1.1154 -2.4002 8 7 5.5355 -1.0323 -2.4496 9 14 3.2836 -1.8948 -3.8136 10 1 2.9326 -0.8512 -4.8099 11 1 4.1292 -2.9310 -4.4590 12 1 2.0413 -2.5222 -3.2953 13 7 2.0196 -0.6924 1.1994 14 6 1.6648 0.0485 2.4166 15 6 2.3128 -0.6214 3.6304 16 6 1.8230 -2.0686 3.7305 17 6 2.1619 -2.8049 2.4314 18 1 3.2435 -2.8296 2.2979 19 6 1.6227 -4.2351 2.4993 20 6 2.3568 -5.0052 3.5988 21 1 2.3398 -4.4508 4.5371 22 6 1.7521 -6.4186 3.7812 23 6 2.9780 -7.3312 3.9796 24 8 4.1459 -6.4934 3.9592 25 6 3.8119 -5.3270 3.1728 26 6 1.5183 -2.0716 1.2523 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7432 -1.7694 -1.2102 31 1 1.6130 -0.2555 -2.1374 32 1 6.0146 -1.3760 -3.2198 33 1 2.0226 1.0749 2.3342 34 1 0.5816 0.0503 2.5380 35 1 3.3968 -0.6111 3.5161 36 1 2.0371 -0.0799 4.5353 37 1 0.7439 -2.0781 3.8837 38 1 2.3152 -2.5627 4.5682 39 1 1.7824 -4.7295 1.5410 40 1 0.5561 -4.2112 2.7225 41 1 1.1968 -6.7139 2.8910 42 1 1.1074 -6.4496 4.6596 43 1 2.9068 -7.8443 4.9385 44 1 3.0313 -8.0611 3.1717 45 1 3.8580 -5.5580 2.1086 46 1 4.4749 -4.4959 3.4131 47 1 1.7695 -2.5852 0.3244 48 1 0.4358 -2.0598 1.3792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591022896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:44 Heat of formation + Delta-G solvation = -65.361806 kcal Electronic energy + Delta-G solvation = -23627.148154 eV Core-core repulsion = 20487.905649 eV Total energy + Delta-G solvation = -3139.242505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80142 -38.84541 -35.66750 -33.56013 -32.25630 -31.06560 -29.76286 -29.08502 -27.76692 -25.65120 -24.23328 -22.87252 -22.63035 -21.40197 -20.43588 -19.47427 -18.60857 -16.63987 -16.54364 -15.79747 -15.58776 -15.21528 -14.63686 -14.28637 -14.22015 -13.90654 -13.52350 -13.46621 -13.18017 -12.86442 -12.70842 -12.42578 -12.20624 -12.10990 -11.76466 -11.59759 -11.49644 -11.33357 -11.07956 -10.97653 -10.82674 -10.60986 -10.52709 -10.31943 -10.24474 -9.98678 -9.78801 -9.68130 -9.58945 -9.46474 -8.99743 -8.41945 -7.46506 -5.90474 -3.84569 3.34559 3.42900 3.44671 3.90457 4.38547 4.51665 4.54079 4.67624 4.83218 4.95272 5.06736 5.15243 5.19857 5.29174 5.36613 5.43277 5.51477 5.59553 5.61629 5.67854 5.73561 5.76745 5.78861 5.82323 5.85229 5.88437 5.90348 5.96262 5.97167 6.04757 6.11843 6.20983 6.28750 6.30128 6.42716 6.47241 6.53689 6.65841 6.73488 6.80905 6.83309 7.11844 7.38073 7.83801 7.88246 7.99035 8.73580 9.24152 9.72783 11.23448 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.005376 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.170975 B = 5207.148642 C = 6392.360239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.075 0.925 4 C -0.007 4.007 5 C -0.491 4.491 6 H 0.081 0.919 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.508 5.508 14 C 0.054 3.946 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.086 4.086 18 H 0.084 0.916 19 C -0.103 4.103 20 C -0.119 4.119 21 H 0.087 0.913 22 C -0.153 4.153 23 C 0.046 3.954 24 O -0.383 6.383 25 C 0.049 3.951 26 C 0.063 3.937 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 -6.860 13.472 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.012 4.012 3 H 0.093 0.907 4 C -0.044 4.044 5 C -0.529 4.529 6 H 0.099 0.901 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.231 5.231 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.105 4.105 18 H 0.102 0.898 19 C -0.141 4.141 20 C -0.137 4.137 21 H 0.105 0.895 22 C -0.191 4.191 23 C -0.031 4.031 24 O -0.302 6.302 25 C -0.027 4.027 26 C -0.065 4.065 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.114 0.886 47 H 0.103 0.897 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -9.818 -6.965 13.427 18.033 hybrid contribution -1.581 -0.374 -0.973 1.894 sum -11.399 -7.339 12.453 18.409 Atomic orbital electron populations 1.22561 0.99897 1.01230 1.00909 1.21677 0.89739 0.98578 0.91214 0.90673 1.19701 0.98037 0.95149 0.91541 1.21073 0.89301 1.37939 1.04614 0.90105 1.25013 0.94647 0.96045 0.98021 1.69914 1.06553 1.47877 1.30352 0.86933 0.80245 0.79545 0.83379 1.20594 1.21633 1.19447 1.61944 1.59145 1.01152 1.00866 1.22063 0.96754 0.97796 0.90813 1.21566 1.01686 0.95367 0.96766 1.21647 1.00118 0.95816 0.97397 1.21218 1.01796 0.92842 0.94596 0.89805 1.21568 0.99262 0.95352 0.97904 1.22773 0.95348 0.95443 1.00181 0.89506 1.23012 0.98231 0.95179 1.02686 1.23109 0.84891 0.93599 1.01466 1.88902 1.34806 1.33388 1.73060 1.23746 0.95315 0.88011 0.95629 1.22094 0.95294 0.90292 0.98857 0.93742 0.92634 0.93034 0.96675 0.96883 0.93087 0.91406 0.95931 0.90976 0.92450 0.92900 0.92275 0.91401 0.91959 0.90597 0.90795 0.90346 0.92650 0.91669 0.88615 0.89694 0.96085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 8.50 37.16 0.32 -2.69 16 2 C 0.10 1.87 2.30 -67.72 -0.16 1.71 16 3 H 0.08 1.52 8.07 -51.93 -0.42 1.11 16 4 C -0.01 -0.16 3.34 -27.88 -0.09 -0.25 16 5 C -0.49 -13.74 9.38 -34.44 -0.32 -14.07 16 6 H 0.08 2.49 7.97 -52.49 -0.42 2.07 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 9 Si 0.87 21.76 27.37 -169.99 -4.65 17.11 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.46 6.69 56.52 0.38 -6.08 16 13 N -0.51 -9.28 4.32 -226.70 -0.98 -10.26 16 14 C 0.05 0.82 5.04 -3.83 -0.02 0.80 16 15 C -0.12 -1.54 6.09 -26.65 -0.16 -1.70 16 16 C -0.11 -1.38 5.01 -26.61 -0.13 -1.51 16 17 C -0.09 -1.19 2.30 -90.54 -0.21 -1.40 16 18 H 0.08 1.34 7.52 -51.93 -0.39 0.95 16 19 C -0.10 -1.20 4.08 -26.73 -0.11 -1.31 16 20 C -0.12 -1.28 2.98 -88.61 -0.26 -1.55 16 21 H 0.09 0.92 6.37 -51.93 -0.33 0.59 16 22 C -0.15 -1.43 6.60 -25.20 -0.17 -1.60 16 23 C 0.05 0.48 7.69 37.73 0.29 0.77 16 24 O -0.38 -5.19 11.54 -35.23 -0.41 -5.59 16 25 C 0.05 0.62 6.58 38.21 0.25 0.87 16 26 C 0.06 1.04 3.91 -3.83 -0.01 1.02 16 27 H 0.04 0.64 6.67 -51.93 -0.35 0.30 16 28 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 29 H 0.05 0.81 6.51 -51.93 -0.34 0.48 16 30 H 0.02 0.36 5.51 -51.93 -0.29 0.07 16 31 H 0.01 0.30 7.29 -51.93 -0.38 -0.07 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.07 1.03 8.07 -51.92 -0.42 0.62 16 34 H 0.02 0.33 6.75 -51.93 -0.35 -0.02 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.66 6.55 -51.93 -0.34 0.32 16 39 H 0.07 0.84 7.98 -51.93 -0.41 0.42 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 42 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 46 H 0.10 1.21 8.04 -51.93 -0.42 0.79 16 47 H 0.08 1.62 5.97 -51.93 -0.31 1.31 16 48 H 0.02 0.33 6.61 -51.93 -0.34 -0.01 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -30.56 352.47 -9.71 -40.26 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.86 Total: -0.29 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.89 Total: -19.20 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.21 Total: -37.61 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.41 Total: -5.59 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.65 Total: 17.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.56 -9.71 -40.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591022896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.098 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds