Wall clock time and date at job start Tue Mar 31 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46951 * 2 1 4 4 C 1.53005 * 109.47123 * 240.00594 * 2 1 3 5 5 C 1.50701 * 109.47025 * 65.83785 * 4 2 1 6 6 H 1.08000 * 119.99925 * 4.69150 * 5 4 2 7 7 C 1.37875 * 120.00002 * 184.68553 * 5 4 2 8 8 N 1.31520 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00287 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47015 * 90.00024 * 9 7 5 11 11 H 1.48490 * 109.47428 * 210.00267 * 9 7 5 12 12 H 1.48502 * 109.46969 * 330.00537 * 9 7 5 13 13 N 1.46893 * 109.47542 * 120.00443 * 2 1 3 14 14 C 1.46843 * 111.00295 * 190.81180 * 13 2 1 15 15 C 1.53041 * 109.52385 * 174.16175 * 14 13 2 16 16 C 1.53113 * 109.28079 * 59.18001 * 15 14 13 17 17 C 1.53122 * 109.15924 * 302.34797 * 16 15 14 18 18 H 1.09001 * 109.50195 * 297.70836 * 17 16 15 19 19 C 1.53002 * 109.50242 * 177.59434 * 17 16 15 20 20 C 1.52995 * 109.47137 * 174.85604 * 19 17 16 21 21 H 1.09007 * 110.74886 * 57.94762 * 20 19 17 22 22 C 1.55305 * 110.84883 * 181.41028 * 20 19 17 23 23 C 1.55208 * 100.82870 * 152.18172 * 22 20 19 24 24 O 1.43651 * 105.25798 * 323.82158 * 23 22 20 25 25 C 1.43236 * 109.97299 * 24.28014 * 24 23 22 26 26 C 1.46850 * 110.99842 * 66.60038 * 13 2 1 27 27 H 1.08993 * 109.47464 * 59.99824 * 1 2 3 28 28 H 1.09000 * 109.47093 * 299.99386 * 1 2 3 29 29 H 1.09009 * 109.46873 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47198 * 185.83708 * 4 2 1 31 31 H 1.09002 * 109.46766 * 305.84056 * 4 2 1 32 32 H 0.96996 * 120.00240 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46261 * 294.17505 * 14 13 2 34 34 H 1.09001 * 109.45976 * 54.14762 * 14 13 2 35 35 H 1.08998 * 109.50264 * 179.12280 * 15 14 13 36 36 H 1.08997 * 109.50223 * 299.23580 * 15 14 13 37 37 H 1.09001 * 109.52581 * 62.24916 * 16 15 14 38 38 H 1.09001 * 109.52488 * 182.37667 * 16 15 14 39 39 H 1.08999 * 109.47179 * 294.86074 * 19 17 16 40 40 H 1.09002 * 109.47125 * 54.85774 * 19 17 16 41 41 H 1.09000 * 111.13034 * 270.24528 * 22 20 19 42 42 H 1.08999 * 111.12680 * 34.41002 * 22 20 19 43 43 H 1.08991 * 110.37159 * 204.80111 * 23 22 20 44 44 H 1.09000 * 110.21171 * 82.75421 * 23 22 20 45 45 H 1.08995 * 109.83472 * 238.77784 * 25 24 23 46 46 H 1.08997 * 109.83071 * 117.80014 * 25 24 23 47 47 H 1.08994 * 109.46750 * 305.85646 * 26 13 2 48 48 H 1.09004 * 109.45983 * 65.82935 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6592 0.0679 -2.4755 6 1 1.1756 1.0280 -2.3711 7 6 1.9281 -0.4357 -3.7304 8 7 2.5166 -1.6050 -3.8575 9 14 1.4554 0.5420 -5.2504 10 1 2.5808 1.4301 -5.6375 11 1 1.1550 -0.3912 -6.3656 12 1 0.2545 1.3646 -4.9561 13 7 2.0198 -0.6925 1.1993 14 6 3.4647 -0.4935 1.3688 15 6 3.9124 -1.1033 2.6992 16 6 3.5798 -2.5978 2.7077 17 6 2.0764 -2.7793 2.4809 18 1 1.5262 -2.3122 3.2978 19 6 1.7443 -4.2720 2.4281 20 6 0.2284 -4.4540 2.3303 21 1 -0.1658 -3.9444 1.4511 22 6 -0.1472 -5.9608 2.3103 23 6 -1.5691 -5.9152 2.9308 24 8 -1.5132 -4.8831 3.9284 25 6 -0.4690 -3.9545 3.6138 26 6 1.6819 -2.1210 1.1569 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1250 -0.8126 -1.1987 31 1 1.5938 -1.7142 -1.3032 32 1 2.7055 -1.9595 -4.7404 33 1 3.9966 -0.9780 0.5500 34 1 3.6872 0.5736 1.3653 35 1 4.9876 -0.9691 2.8175 36 1 3.3912 -0.6097 3.5194 37 1 4.1312 -3.0983 1.9117 38 1 3.8586 -3.0276 3.6698 39 1 2.2211 -4.7196 1.5562 40 1 2.1110 -4.7580 3.3323 41 1 -0.1721 -6.3461 1.2910 42 1 0.5327 -6.5435 2.9319 43 1 -1.8134 -6.8728 3.3904 44 1 -2.3053 -5.6639 2.1673 45 1 0.2490 -3.9140 4.4329 46 1 -0.8931 -2.9651 3.4430 47 1 0.6095 -2.2361 0.9995 48 1 2.2222 -2.5979 0.3391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591022897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:46 Heat of formation + Delta-G solvation = -75.303008 kcal Electronic energy + Delta-G solvation = -23604.547559 eV Core-core repulsion = 20464.873972 eV Total energy + Delta-G solvation = -3139.673588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83541 -38.76011 -35.54632 -33.70779 -32.44590 -30.99792 -29.65512 -29.01991 -26.99303 -25.72870 -24.20429 -22.94316 -22.76629 -21.70617 -20.16481 -19.66386 -18.56005 -16.76832 -16.47825 -16.00303 -15.32641 -14.88023 -14.63492 -14.43384 -14.17706 -13.66384 -13.50258 -13.32037 -13.11280 -12.90291 -12.79323 -12.46342 -12.12194 -11.91074 -11.68544 -11.45707 -11.22455 -11.10453 -11.01286 -10.91343 -10.81715 -10.66277 -10.56497 -10.44538 -10.30479 -9.92030 -9.86124 -9.78951 -9.55766 -9.48693 -9.09401 -8.37309 -7.42894 -6.02912 -4.04827 3.29194 3.35882 3.38975 3.84018 4.36328 4.42761 4.57610 4.60225 4.84531 5.04664 5.06709 5.15854 5.22899 5.23545 5.32687 5.39508 5.50117 5.62921 5.67505 5.69281 5.76312 5.81313 5.85946 5.89873 5.92464 6.02862 6.07829 6.12295 6.14118 6.21298 6.27283 6.28588 6.38456 6.45048 6.48797 6.53479 6.69557 6.83513 6.94284 6.97864 7.04603 7.55952 7.60193 7.74885 7.91584 7.99937 8.42463 9.01595 9.58950 11.08156 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.004578 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.363329 B = 6114.094464 C = 6973.360163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.080 3.920 3 H 0.066 0.934 4 C -0.001 4.001 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.537 5.537 14 C 0.054 3.946 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.086 4.086 18 H 0.074 0.926 19 C -0.101 4.101 20 C -0.123 4.123 21 H 0.091 0.909 22 C -0.153 4.153 23 C 0.050 3.950 24 O -0.390 6.390 25 C 0.056 3.944 26 C 0.058 3.942 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.011 0.989 31 H 0.022 0.978 32 H 0.259 0.741 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -6.548 14.408 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.028 4.028 3 H 0.085 0.915 4 C -0.039 4.039 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.260 5.260 14 C -0.075 4.075 15 C -0.151 4.151 16 C -0.152 4.152 17 C -0.104 4.104 18 H 0.093 0.907 19 C -0.139 4.139 20 C -0.142 4.142 21 H 0.109 0.891 22 C -0.191 4.191 23 C -0.026 4.026 24 O -0.309 6.309 25 C -0.020 4.020 26 C -0.070 4.070 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.154 -6.436 14.864 16.340 hybrid contribution 0.417 0.098 -2.017 2.062 sum -1.737 -6.338 12.847 14.430 Atomic orbital electron populations 1.21684 0.95428 1.00826 1.00421 1.21827 0.94970 0.97480 0.88484 0.91537 1.19667 0.95997 0.96357 0.91841 1.21173 1.38763 1.04504 0.90816 0.92580 1.25005 0.95269 0.94960 0.99095 1.69963 1.42497 1.17858 1.23232 0.86637 0.78901 0.79903 0.82843 1.20720 1.21288 1.19822 1.62280 1.13142 1.10773 1.39852 1.22007 0.89144 1.00201 0.96107 1.21562 0.99845 0.95495 0.98248 1.21602 0.95924 0.96650 1.00978 1.21247 0.96075 0.94180 0.98932 0.90732 1.21569 0.93607 0.96613 1.02152 1.22795 0.96972 0.95432 0.98955 0.89121 1.23373 0.96751 0.96775 1.02192 1.23387 0.96691 0.91419 0.91101 1.88372 1.55136 1.38870 1.48551 1.23234 0.89318 0.92924 0.96507 1.22126 1.00814 0.88673 0.95371 0.91745 0.94240 0.93760 0.97123 0.95994 0.93090 0.94341 0.91516 0.92239 0.91679 0.92263 0.92521 0.91358 0.91823 0.89820 0.90492 0.90115 0.92250 0.91288 0.91227 0.90994 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.96 37.16 0.33 -2.08 16 2 C 0.08 1.64 2.32 -67.71 -0.16 1.48 16 3 H 0.07 1.41 7.97 -51.93 -0.41 0.99 16 4 C 0.00 -0.01 3.57 -27.88 -0.10 -0.11 16 5 C -0.51 -14.17 8.32 -34.44 -0.29 -14.46 16 6 H 0.06 1.51 7.29 -52.49 -0.38 1.13 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.54 -9.53 4.60 -226.69 -1.04 -10.57 16 14 C 0.05 0.89 5.15 -3.83 -0.02 0.87 16 15 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 16 C -0.11 -1.44 5.29 -26.61 -0.14 -1.58 16 17 C -0.09 -1.11 2.26 -90.54 -0.20 -1.32 16 18 H 0.07 0.97 7.28 -51.93 -0.38 0.59 16 19 C -0.10 -1.15 4.07 -26.73 -0.11 -1.26 16 20 C -0.12 -1.40 2.79 -88.68 -0.25 -1.65 16 21 H 0.09 1.15 6.59 -51.93 -0.34 0.81 16 22 C -0.15 -1.52 6.64 -24.34 -0.16 -1.68 16 23 C 0.05 0.52 7.78 38.33 0.30 0.82 16 24 O -0.39 -5.07 11.36 -35.23 -0.40 -5.47 16 25 C 0.06 0.67 6.46 37.88 0.24 0.91 16 26 C 0.06 0.96 3.57 -3.83 -0.01 0.95 16 27 H 0.06 1.30 7.11 -51.93 -0.37 0.93 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.83 6.46 -51.92 -0.34 0.50 16 30 H 0.01 0.29 6.62 -51.93 -0.34 -0.06 16 31 H 0.02 0.59 6.82 -51.93 -0.35 0.24 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.04 0.73 6.78 -51.93 -0.35 0.37 16 34 H 0.07 1.09 8.01 -51.93 -0.42 0.68 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.76 7.72 -51.93 -0.40 0.36 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.21 4.70 -51.93 -0.24 0.97 16 48 H 0.04 0.81 6.70 -51.93 -0.35 0.46 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -29.51 354.76 -10.09 -39.60 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.88 Total: -0.27 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -0.82 Total: -19.23 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.31 Total: -36.44 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.40 Total: -5.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.51 -10.09 -39.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591022897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.707 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds