Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.52996 * 109.46972 * 299.99733 * 4 2 1 6 6 C 1.53008 * 109.47409 * 300.00085 * 5 4 2 7 7 C 1.52993 * 109.46733 * 60.00092 * 6 5 4 8 8 H 1.09000 * 109.47250 * 60.00079 * 7 6 5 9 9 C 1.52997 * 109.47024 * 180.02562 * 7 6 5 10 10 C 1.53006 * 109.47075 * 295.00012 * 9 7 6 11 11 N 1.46899 * 109.47071 * 179.97438 * 10 9 7 12 12 C 1.47445 * 111.00182 * 69.87506 * 11 10 9 13 13 C 1.54316 * 107.23169 * 123.25554 * 12 11 10 14 14 C 1.55137 * 103.02099 * 22.28739 * 13 12 11 15 15 O 1.42896 * 110.99338 * 82.47348 * 14 13 12 16 16 C 1.50699 * 110.98905 * 206.25452 * 14 13 12 17 17 H 1.08002 * 120.00139 * 118.54615 * 16 14 13 18 18 C 1.37882 * 120.00078 * 298.54081 * 16 14 13 19 19 N 1.31519 * 119.99770 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00262 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47068 * 89.99928 * 20 18 16 22 22 H 1.48497 * 109.47126 * 210.00328 * 20 18 16 23 23 H 1.48501 * 109.46703 * 330.00457 * 20 18 16 24 24 C 1.47846 * 111.00232 * 190.71817 * 11 10 9 25 25 C 1.52996 * 109.47473 * 300.00094 * 7 6 5 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 29 29 H 1.08996 * 109.47407 * 60.00219 * 4 2 1 30 30 H 1.09000 * 109.46986 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47552 * 60.00305 * 5 4 2 32 32 H 1.09001 * 109.46993 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47021 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.46943 * 300.00592 * 6 5 4 35 35 H 1.09001 * 109.47096 * 55.00009 * 9 7 6 36 36 H 1.09004 * 109.47610 * 175.00076 * 9 7 6 37 37 H 1.09001 * 109.47156 * 299.99960 * 10 9 7 38 38 H 1.08994 * 109.47047 * 60.00145 * 10 9 7 39 39 H 1.09000 * 109.89060 * 242.66442 * 12 11 10 40 40 H 1.09001 * 109.89022 * 3.68512 * 12 11 10 41 41 H 1.09008 * 110.70132 * 140.66720 * 13 12 11 42 42 H 1.08991 * 110.70584 * 263.72442 * 13 12 11 43 43 H 0.96706 * 114.00456 * 61.45250 * 15 14 13 44 44 H 0.97000 * 120.00120 * 180.02562 * 19 18 16 45 45 H 1.09010 * 110.36949 * 332.46914 * 24 11 10 46 46 H 1.09004 * 110.37210 * 94.80168 * 24 11 10 47 47 H 1.09004 * 109.47368 * 300.00213 * 25 7 6 48 48 H 1.09001 * 109.47372 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2492 9 6 2.0405 -2.8847 2.4984 10 6 1.4309 -4.2866 2.5631 11 7 1.9216 -4.9789 3.7622 12 6 1.3563 -4.3815 4.9859 13 6 0.6360 -5.5092 5.7546 14 6 1.3170 -6.7928 5.2112 15 8 2.5502 -7.0439 5.8881 16 6 0.3945 -7.9797 5.3178 17 1 0.0848 -8.5047 4.4263 18 6 -0.0539 -8.3955 6.5536 19 7 0.3230 -7.7559 7.6392 20 14 -1.1968 -9.8671 6.6859 21 1 -0.3926 -11.1063 6.8370 22 1 -2.0802 -9.7030 7.8682 23 1 -2.0259 -9.9618 5.4576 24 6 1.5636 -6.4130 3.7298 25 6 2.0400 -0.7213 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 1.6766 -0.2074 -2.1393 30 1 3.1299 -0.7208 -1.2496 31 1 0.4399 -2.1638 -1.2492 32 1 1.8936 -2.6776 -2.1391 33 1 1.6770 -3.9128 -0.0003 34 1 3.1300 -2.8850 0.0000 35 1 3.1269 -2.9625 2.4545 36 1 1.7522 -2.3218 3.3861 37 1 0.3446 -4.2087 2.6070 38 1 1.7193 -4.8495 1.6755 39 1 2.1559 -3.9664 5.5995 40 1 0.6466 -3.5973 4.7220 41 1 0.8007 -5.4103 6.8276 42 1 -0.4301 -5.5099 5.5282 43 1 2.4540 -7.1914 6.8390 44 1 0.0078 -8.0485 8.5087 45 1 0.6574 -6.5647 3.1432 46 1 2.3851 -7.0001 3.3192 47 1 3.1300 -0.7212 1.2492 48 1 1.6770 -0.2076 2.1394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = -83.731633 kcal Electronic energy + Delta-G solvation = -23146.837951 eV Core-core repulsion = 20006.798871 eV Total energy + Delta-G solvation = -3140.039080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.55115 -38.25283 -35.16482 -33.27787 -32.10359 -31.59766 -29.84823 -28.13499 -27.13406 -26.78221 -24.42443 -22.93693 -22.30348 -20.79449 -19.64990 -19.38370 -18.67278 -16.98372 -15.86932 -15.31290 -14.91531 -14.85526 -14.60637 -14.46063 -13.98377 -13.95214 -13.60230 -13.03958 -12.75887 -12.73395 -12.50109 -11.99164 -11.87136 -11.70321 -11.62563 -11.54802 -11.21128 -11.17912 -11.13637 -10.97400 -10.86563 -10.70728 -10.53231 -10.40364 -10.24773 -10.16638 -9.96525 -9.87485 -9.72733 -9.13225 -8.56831 -8.04131 -7.51549 -6.18671 -4.26789 3.23274 3.30207 3.33238 4.30477 4.48189 4.58365 4.61608 4.79432 5.01564 5.07858 5.12231 5.21898 5.25064 5.36902 5.43110 5.53110 5.57163 5.57946 5.67049 5.73577 5.78517 5.82961 5.90207 5.91365 5.97764 6.01473 6.05365 6.08046 6.13480 6.19147 6.21730 6.25651 6.32170 6.36229 6.48391 6.56153 6.61035 6.73409 6.92403 7.12995 7.46088 7.52891 7.71563 7.83743 7.90402 8.21010 8.75528 9.41768 9.55704 10.88180 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.003235 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.596608 B = 8652.895972 C = 8789.439438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.087 4.087 8 H 0.070 0.930 9 C -0.108 4.108 10 C 0.051 3.949 11 N -0.529 5.529 12 C 0.044 3.956 13 C -0.144 4.144 14 C 0.251 3.749 15 O -0.579 6.579 16 C -0.536 4.536 17 H 0.060 0.940 18 C 0.071 3.929 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.059 3.941 25 C -0.108 4.108 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.376 0.624 44 H 0.266 0.734 45 H 0.044 0.956 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 13.972 -13.326 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.105 4.105 8 H 0.088 0.912 9 C -0.146 4.146 10 C -0.077 4.077 11 N -0.253 5.253 12 C -0.083 4.083 13 C -0.183 4.183 14 C 0.211 3.789 15 O -0.386 6.386 16 C -0.574 4.574 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.068 4.068 25 C -0.146 4.146 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.225 0.775 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.767 14.109 -13.742 19.774 hybrid contribution -1.858 -0.889 0.736 2.187 sum -0.091 13.220 -13.006 18.545 Atomic orbital electron populations 1.21945 0.95480 1.02249 1.01170 1.21091 0.95873 0.98802 0.95242 0.91698 1.21553 1.00436 0.95861 0.97238 1.21583 1.00910 0.95464 0.97953 1.21632 1.00787 0.99073 0.93778 1.21177 1.00360 0.94285 0.94722 0.91215 1.21608 1.01118 0.95122 0.96731 1.22279 0.96459 0.94799 0.94200 1.63578 1.57223 1.03237 1.01221 1.22834 0.96794 0.96936 0.91781 1.23242 0.98580 0.95744 1.00738 1.19526 0.82013 0.90965 0.86400 1.86145 1.32804 1.93988 1.25703 1.21562 1.28470 1.14197 0.93198 0.92179 1.25004 0.95792 0.96662 0.95665 1.69745 1.45351 1.40160 0.98142 0.86486 0.80504 0.82720 0.77638 1.20431 1.21130 1.19863 1.22971 0.98312 0.86938 0.98572 1.21598 1.00539 0.95333 0.97094 0.91864 0.92923 0.93176 0.92490 0.92158 0.91861 0.92401 0.91719 0.92007 0.91435 0.92213 0.95569 0.91481 0.91969 0.94634 0.90554 0.92798 0.77504 0.92430 0.93738 0.91307 0.92026 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.50 37.16 0.32 -0.97 16 2 C -0.09 -0.79 3.19 -90.62 -0.29 -1.08 16 3 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.95 5.45 -26.73 -0.15 -1.10 16 5 C -0.12 -1.10 5.65 -26.73 -0.15 -1.25 16 6 C -0.12 -1.20 4.96 -26.73 -0.13 -1.33 16 7 C -0.09 -0.95 1.91 -90.63 -0.17 -1.12 16 8 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 9 C -0.11 -1.46 4.71 -26.73 -0.13 -1.58 16 10 C 0.05 0.83 4.29 -3.82 -0.02 0.81 16 11 N -0.53 -10.56 5.16 -231.25 -1.19 -11.75 16 12 C 0.04 0.89 6.21 -2.84 -0.02 0.88 16 13 C -0.14 -3.40 5.37 -24.91 -0.13 -3.53 16 14 C 0.25 6.38 0.87 -89.64 -0.08 6.30 16 15 O -0.58 -15.49 13.16 -35.23 -0.46 -15.95 16 16 C -0.54 -14.59 8.27 -34.44 -0.28 -14.87 16 17 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 18 C 0.07 1.90 5.29 -17.82 -0.09 1.81 16 19 N -0.89 -24.14 10.75 55.43 0.60 -23.54 16 20 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.06 1.33 5.86 -2.30 -0.01 1.32 16 25 C -0.11 -1.06 4.73 -26.73 -0.13 -1.19 16 26 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.84 7.14 -51.93 -0.37 0.47 16 37 H 0.03 0.43 7.96 -51.93 -0.41 0.02 16 38 H 0.07 1.03 6.49 -51.93 -0.34 0.70 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.04 0.65 6.91 -51.93 -0.36 0.29 16 41 H 0.08 1.90 7.54 -51.92 -0.39 1.51 16 42 H 0.05 1.30 8.04 -51.93 -0.42 0.88 16 43 H 0.38 10.08 7.56 45.56 0.34 10.42 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.04 0.97 7.70 -51.92 -0.40 0.57 16 46 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -27.32 352.56 -10.45 -37.77 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.22 Total: 9.27 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.47 Total: -16.91 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.60 Total: -35.29 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.46 Total: -15.95 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.32 -10.45 -37.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.960 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds