Wall clock time and date at job start Tue Mar 31 2020 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53002 * 109.47128 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46978 * 59.99726 * 5 4 2 7 7 C 1.53002 * 109.47415 * 300.00098 * 6 5 4 8 8 H 1.09002 * 109.47070 * 300.00053 * 7 6 5 9 9 C 1.53000 * 109.47233 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46846 * 65.00509 * 9 7 6 11 11 N 1.46902 * 109.46859 * 180.02562 * 10 9 7 12 12 C 1.47849 * 110.99726 * 290.83801 * 11 10 9 13 13 C 1.54907 * 104.79385 * 213.63861 * 12 11 10 14 14 C 1.55141 * 101.65380 * 37.07332 * 13 12 11 15 15 O 1.42894 * 110.70851 * 82.72775 * 14 13 12 16 16 C 1.50705 * 110.85361 * 205.89494 * 14 13 12 17 17 H 1.07998 * 119.99871 * 113.68911 * 16 14 13 18 18 C 1.37877 * 119.99629 * 293.68439 * 16 14 13 19 19 N 1.31518 * 120.00155 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99635 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47374 * 89.99825 * 20 18 16 22 22 H 1.48499 * 109.46778 * 209.99824 * 20 18 16 23 23 H 1.48497 * 109.47179 * 329.99598 * 20 18 16 24 24 C 1.47439 * 110.99670 * 170.00112 * 11 10 9 25 25 C 1.52992 * 109.47482 * 120.00216 * 2 1 3 26 26 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47289 * 300.00084 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99828 * 1 2 3 29 29 H 1.08996 * 109.47407 * 60.00219 * 4 2 1 30 30 H 1.09002 * 109.47596 * 299.99825 * 4 2 1 31 31 H 1.09002 * 109.47097 * 299.99925 * 5 4 2 32 32 H 1.08998 * 109.47844 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47140 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47497 * 60.00450 * 6 5 4 35 35 H 1.09002 * 109.47069 * 184.99942 * 9 7 6 36 36 H 1.08991 * 109.47625 * 305.00262 * 9 7 6 37 37 H 1.09002 * 109.46824 * 299.99583 * 10 9 7 38 38 H 1.09001 * 109.47241 * 59.99481 * 10 9 7 39 39 H 1.09001 * 110.37488 * 332.46748 * 12 11 10 40 40 H 1.08999 * 110.37141 * 94.81139 * 12 11 10 41 41 H 1.09001 * 110.99106 * 278.98245 * 13 12 11 42 42 H 1.09000 * 111.01947 * 155.17555 * 13 12 11 43 43 H 0.96704 * 114.00302 * 66.39951 * 15 14 13 44 44 H 0.97003 * 119.99642 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.88398 * 242.66064 * 24 11 10 46 46 H 1.08996 * 109.89398 * 3.68373 * 24 11 10 47 47 H 1.09002 * 109.47103 * 59.99753 * 25 2 1 48 48 H 1.08998 * 109.46862 * 300.00565 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0804 -1.4416 -0.0005 7 6 3.5705 -0.7204 1.2488 8 1 3.9335 0.3074 1.2486 9 6 4.0805 -1.4416 2.4980 10 6 5.6054 -1.3336 2.5624 11 7 6.0952 -2.0266 3.7615 12 6 5.7046 -1.3014 4.9893 13 6 6.8758 -1.5346 5.9759 14 6 8.1005 -1.4908 5.0246 15 8 8.4969 -0.1412 4.7731 16 6 9.2490 -2.2847 5.5917 17 1 9.5826 -3.1830 5.0936 18 6 9.8740 -1.8640 6.7465 19 7 9.4682 -0.7697 7.3527 20 14 11.2982 -2.8477 7.4491 21 1 12.5741 -2.3518 6.8734 22 1 11.3273 -2.6908 8.9255 23 1 11.1253 -4.2823 7.1071 24 6 7.5641 -2.1509 3.7369 25 6 2.0400 -0.7212 1.2491 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6766 -0.2074 -2.1393 30 1 1.6766 -1.7489 -1.2494 31 1 3.9329 0.3071 -1.2499 32 1 3.9333 -1.2341 -2.1399 33 1 5.1704 -1.4408 -0.0005 34 1 3.7175 -2.4694 -0.0002 35 1 3.6460 -0.9821 3.3858 36 1 3.7923 -2.4918 2.4544 37 1 6.0400 -1.7931 1.6747 38 1 5.8937 -0.2833 2.6060 39 1 5.5897 -0.2376 4.7813 40 1 4.7797 -1.7119 5.3944 41 1 6.7913 -2.5080 6.4591 42 1 6.9279 -0.7365 6.7165 43 1 8.8416 0.3190 5.5506 44 1 9.9077 -0.4740 8.1653 45 1 7.8468 -3.2034 3.7143 46 1 7.9649 -1.6406 2.8612 47 1 1.6767 -1.7489 1.2491 48 1 1.6766 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:06 Heat of formation + Delta-G solvation = -89.642353 kcal Electronic energy + Delta-G solvation = -22994.227279 eV Core-core repulsion = 19853.931890 eV Total energy + Delta-G solvation = -3140.295388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.28850 -38.22193 -35.17579 -33.49953 -32.04930 -31.92319 -29.95342 -28.14333 -27.12601 -26.40274 -24.38521 -22.66621 -22.08830 -20.44422 -19.83025 -19.61024 -19.37056 -17.08575 -15.54024 -15.22267 -14.93254 -14.80567 -14.54025 -14.40430 -14.19349 -13.78693 -13.64627 -13.21386 -12.81698 -12.53433 -12.34137 -11.97769 -11.93611 -11.84502 -11.70063 -11.42226 -11.26997 -11.23748 -11.04721 -10.89292 -10.81144 -10.62237 -10.44980 -10.42673 -10.37966 -10.24729 -10.00083 -9.88696 -9.77069 -9.20348 -8.58852 -8.06667 -7.56657 -6.19353 -4.26214 3.24026 3.30957 3.34740 4.31855 4.45934 4.56519 4.65249 4.80358 5.00270 5.06651 5.07527 5.25591 5.33169 5.35261 5.43419 5.51489 5.56105 5.57701 5.69315 5.74137 5.77437 5.81804 5.89713 5.93805 6.00877 6.04833 6.09050 6.14169 6.19906 6.21039 6.22648 6.30301 6.34374 6.36343 6.48532 6.52710 6.59027 6.66041 6.99247 7.12034 7.46017 7.51304 7.73901 7.83620 7.90358 8.17770 8.75228 9.41675 9.55260 10.87886 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.043569 B = 0.003065 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.498646 B = 9133.127422 C = 9381.647377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.086 4.086 8 H 0.067 0.933 9 C -0.107 4.107 10 C 0.053 3.947 11 N -0.532 5.532 12 C 0.043 3.957 13 C -0.132 4.132 14 C 0.236 3.764 15 O -0.593 6.593 16 C -0.530 4.530 17 H 0.062 0.938 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.058 3.942 25 C -0.107 4.107 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.035 0.965 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.383 0.617 44 H 0.267 0.733 45 H 0.077 0.923 46 H 0.044 0.956 47 H 0.061 0.939 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.555 1.174 -12.581 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.105 4.105 8 H 0.085 0.915 9 C -0.145 4.145 10 C -0.076 4.076 11 N -0.256 5.256 12 C -0.085 4.085 13 C -0.170 4.170 14 C 0.196 3.804 15 O -0.403 6.403 16 C -0.569 4.569 17 H 0.080 0.920 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.069 4.069 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.235 0.765 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.941 0.631 -13.036 19.838 hybrid contribution 1.324 0.489 1.070 1.771 sum -13.616 1.120 -11.965 18.161 Atomic orbital electron populations 1.21834 0.95564 1.01651 1.01400 1.21144 0.95085 0.99676 0.95262 0.91418 1.21586 0.95733 1.00491 0.97208 1.21546 0.95448 1.00789 0.98005 1.21634 1.00655 0.99226 0.93763 1.21156 0.94843 0.99700 0.94772 0.91495 1.21580 0.95419 1.00779 0.96710 1.22294 0.94818 0.96664 0.93811 1.63664 1.12228 1.48037 1.01632 1.23048 0.98837 0.95349 0.91238 1.23162 0.94648 1.01481 0.97756 1.19718 0.91060 0.80708 0.88952 1.86072 1.85525 1.27436 1.41266 1.21626 1.16142 1.10129 1.08958 0.91968 1.25019 0.97064 0.95097 0.96130 1.69597 1.41685 1.23096 1.19669 0.86452 0.82268 0.80455 0.77989 1.20538 1.21119 1.19752 1.22819 0.85372 1.00264 0.98489 1.21635 0.95214 1.00539 0.97063 0.92802 0.92779 0.92990 0.92494 0.92128 0.92175 0.92284 0.91668 0.92010 0.92239 0.91526 0.91584 0.95119 0.94644 0.92296 0.91897 0.91034 0.76544 0.92329 0.90449 0.93719 0.92018 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.09 -0.83 2.72 -90.62 -0.25 -1.07 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.11 -0.96 5.20 -26.73 -0.14 -1.10 16 5 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 6 C -0.12 -1.23 4.96 -26.73 -0.13 -1.37 16 7 C -0.09 -0.97 2.19 -90.59 -0.20 -1.17 16 8 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 9 C -0.11 -1.46 4.73 -26.73 -0.13 -1.59 16 10 C 0.05 0.88 4.32 -3.82 -0.02 0.86 16 11 N -0.53 -10.55 5.16 -231.24 -1.19 -11.75 16 12 C 0.04 0.87 5.77 -2.30 -0.01 0.86 16 13 C -0.13 -3.11 5.67 -24.59 -0.14 -3.25 16 14 C 0.24 5.98 0.85 -89.95 -0.08 5.91 16 15 O -0.59 -15.80 13.08 -35.23 -0.46 -16.26 16 16 C -0.53 -14.42 8.22 -34.44 -0.28 -14.70 16 17 H 0.06 1.68 7.53 -52.49 -0.40 1.28 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 19 N -0.90 -24.31 10.69 55.43 0.59 -23.72 16 20 Si 0.90 20.87 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.06 1.30 6.21 -2.84 -0.02 1.28 16 25 C -0.11 -1.07 4.49 -26.71 -0.12 -1.19 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.84 7.49 -51.93 -0.39 0.46 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.05 6.45 -51.93 -0.34 0.72 16 38 H 0.03 0.56 7.85 -51.93 -0.41 0.15 16 39 H 0.04 0.73 7.62 -51.93 -0.40 0.33 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 42 H 0.07 1.78 7.76 -51.93 -0.40 1.38 16 43 H 0.38 10.40 6.98 45.56 0.32 10.72 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.08 1.73 7.63 -51.93 -0.40 1.34 16 46 H 0.04 1.00 7.48 -51.93 -0.39 0.61 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -27.06 359.25 -10.69 -37.76 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -8.61 Total: 9.59 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.42 Total: -16.88 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.60 Total: -35.46 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.46 Total: -16.26 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.06 -10.69 -37.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.884 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds