Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47495 * 2 1 4 4 C 1.53005 * 109.47076 * 240.00585 * 2 1 3 5 5 C 1.52995 * 109.47522 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46982 * 59.99807 * 5 4 2 7 7 C 1.53005 * 109.47150 * 300.00421 * 6 5 4 8 8 H 1.08999 * 109.46839 * 299.99539 * 7 6 5 9 9 C 1.52995 * 109.47021 * 179.97438 * 7 6 5 10 10 C 1.53001 * 109.47336 * 64.99582 * 9 7 6 11 11 N 1.46903 * 109.47479 * 179.97438 * 10 9 7 12 12 C 1.48563 * 111.00026 * 290.13233 * 11 10 9 13 13 C 1.54377 * 104.59170 * 200.95950 * 12 11 10 14 14 C 1.54252 * 105.06483 * 23.85055 * 13 12 11 15 15 O 1.42907 * 110.32664 * 241.00599 * 14 13 12 16 16 C 1.50698 * 110.32719 * 118.89894 * 14 13 12 17 17 H 1.08005 * 119.99734 * 238.54769 * 16 14 13 18 18 C 1.37871 * 119.99971 * 58.53854 * 16 14 13 19 19 N 1.31514 * 120.00364 * 5.75832 * 18 16 14 20 20 Si 1.86804 * 120.00118 * 185.75939 * 18 16 14 21 21 H 1.48500 * 109.46895 * 265.14763 * 20 18 16 22 22 H 1.48495 * 109.47053 * 145.14524 * 20 18 16 23 23 H 1.48503 * 109.47081 * 25.14793 * 20 18 16 24 24 C 1.48557 * 111.00207 * 174.70918 * 11 10 9 25 25 C 1.52997 * 109.46937 * 120.01010 * 2 1 3 26 26 H 1.08995 * 109.46787 * 299.99638 * 1 2 3 27 27 H 1.09007 * 109.46886 * 59.99202 * 1 2 3 28 28 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47221 * 300.00070 * 4 2 1 30 30 H 1.09004 * 109.47273 * 59.99837 * 4 2 1 31 31 H 1.08993 * 109.47543 * 180.02562 * 5 4 2 32 32 H 1.09000 * 109.46870 * 300.00211 * 5 4 2 33 33 H 1.09001 * 109.47168 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46988 * 60.00476 * 6 5 4 35 35 H 1.09002 * 109.47234 * 304.99993 * 9 7 6 36 36 H 1.08993 * 109.47319 * 185.00094 * 9 7 6 37 37 H 1.09002 * 109.46623 * 60.00038 * 10 9 7 38 38 H 1.09001 * 109.47633 * 300.00334 * 10 9 7 39 39 H 1.08994 * 110.40999 * 82.17635 * 12 11 10 40 40 H 1.09002 * 110.51029 * 319.78224 * 12 11 10 41 41 H 1.09011 * 110.32118 * 264.95345 * 13 12 11 42 42 H 1.09000 * 110.32719 * 142.75017 * 13 12 11 43 43 H 0.96703 * 113.99631 * 303.57965 * 15 14 13 44 44 H 0.96995 * 120.00552 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.40714 * 40.26466 * 24 11 10 46 46 H 1.08995 * 110.41460 * 277.82439 * 24 11 10 47 47 H 1.09000 * 109.47456 * 59.99872 * 25 2 1 48 48 H 1.08995 * 109.46853 * 299.99311 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5700 -0.7218 -1.2491 6 6 4.0795 -1.4435 0.0001 7 6 3.5695 -0.7224 1.2494 8 1 3.9333 0.3051 1.2497 9 6 4.0784 -1.4445 2.4985 10 6 5.6033 -1.3378 2.5636 11 7 6.0920 -2.0306 3.7633 12 6 5.7143 -1.2919 4.9957 13 6 6.7050 -1.7928 6.0684 14 6 7.9304 -2.2965 5.2784 15 8 8.1405 -3.6888 5.5227 16 6 9.1577 -1.5085 5.6576 17 1 9.7058 -0.9657 4.9016 18 6 9.5809 -1.4804 6.9695 19 7 8.9828 -2.2299 7.8696 20 14 11.0037 -0.3777 7.4686 21 1 12.2666 -1.1586 7.4459 22 1 10.7687 0.1438 8.8390 23 1 11.1068 0.7582 6.5177 24 6 7.5770 -2.0577 3.7947 25 6 2.0400 -0.7215 1.2491 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -1.7488 -1.2495 30 1 1.6767 -0.2072 -2.1393 31 1 3.9333 -1.2351 -2.1393 32 1 3.9337 0.3058 -1.2488 33 1 5.1695 -1.4436 0.0005 34 1 3.7158 -2.4710 -0.0003 35 1 3.7894 -2.4945 2.4543 36 1 3.6438 -0.9851 3.3862 37 1 5.8924 -0.2877 2.6078 38 1 6.0380 -1.7972 1.6759 39 1 4.6902 -1.5304 5.2829 40 1 5.8262 -0.2180 4.8467 41 1 6.2626 -2.6079 6.6413 42 1 6.9912 -0.9756 6.7305 43 1 8.2464 -3.9124 6.4576 44 1 9.2802 -2.2099 8.7926 45 1 7.9818 -1.1039 3.4563 46 1 7.9555 -2.8726 3.1778 47 1 1.6766 -1.7491 1.2490 48 1 1.6767 -0.2077 2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = -88.093958 kcal Electronic energy + Delta-G solvation = -22930.970475 eV Core-core repulsion = 19790.742231 eV Total energy + Delta-G solvation = -3140.228245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.31144 -38.18893 -35.23760 -33.52713 -32.10250 -31.95066 -29.97411 -28.00907 -27.11932 -26.42301 -24.39040 -22.68696 -22.11763 -20.53061 -19.88797 -19.75369 -19.23671 -16.89577 -15.61973 -15.30876 -15.01073 -14.82171 -14.67402 -14.30910 -14.05946 -13.81142 -13.51993 -13.24561 -12.97393 -12.54105 -12.43751 -12.12297 -11.97480 -11.94090 -11.73537 -11.35039 -11.19850 -11.18061 -11.07132 -10.96340 -10.77696 -10.61745 -10.48269 -10.43083 -10.40457 -10.27829 -9.97158 -9.91005 -9.72547 -9.09170 -8.52507 -8.05488 -7.72370 -6.17649 -4.24918 3.23279 3.30782 3.34278 4.31195 4.43914 4.53982 4.62477 4.78810 4.97380 5.03801 5.10083 5.21659 5.29975 5.32385 5.40730 5.49128 5.51787 5.55110 5.64716 5.69009 5.77226 5.81793 5.85693 5.90525 5.94504 6.00087 6.04372 6.07469 6.12287 6.17932 6.18490 6.24815 6.26298 6.33498 6.44066 6.53099 6.57705 6.69417 6.99790 7.08196 7.42036 7.56052 7.57307 7.78858 7.85050 8.27976 8.77801 9.42831 9.62323 10.89580 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035005 B = 0.003084 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.687509 B = 9077.215882 C = 9159.198724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.085 4.085 8 H 0.066 0.934 9 C -0.107 4.107 10 C 0.044 3.956 11 N -0.511 5.511 12 C 0.033 3.967 13 C -0.121 4.121 14 C 0.253 3.747 15 O -0.586 6.586 16 C -0.536 4.536 17 H 0.059 0.941 18 C 0.070 3.930 19 N -0.892 5.892 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.051 3.949 25 C -0.108 4.108 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.377 0.623 44 H 0.266 0.734 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.042 4.278 -13.640 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.104 4.104 8 H 0.084 0.916 9 C -0.145 4.145 10 C -0.085 4.085 11 N -0.235 5.235 12 C -0.094 4.094 13 C -0.160 4.160 14 C 0.212 3.788 15 O -0.394 6.394 16 C -0.575 4.575 17 H 0.077 0.923 18 C -0.132 4.132 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.077 4.077 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.227 0.773 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.326 3.668 -14.126 20.451 hybrid contribution 1.152 1.565 1.003 2.187 sum -13.173 5.233 -13.123 19.317 Atomic orbital electron populations 1.21835 0.95541 1.01692 1.01402 1.21141 0.95112 0.99624 0.95248 0.91452 1.21589 0.95720 1.00540 0.97210 1.21542 0.95473 1.00724 0.98018 1.21640 1.00630 0.99310 0.93738 1.21137 0.94921 0.99591 0.94772 0.91558 1.21563 0.95175 1.01012 0.96744 1.22293 0.95266 0.96320 0.94594 1.65392 1.10474 1.46584 1.01056 1.23124 0.99317 0.95147 0.91860 1.22857 0.95722 1.00828 0.96568 1.19239 0.91395 0.80054 0.88067 1.86149 1.95281 1.26418 1.31533 1.21710 1.11711 1.30342 0.93716 0.92318 1.24988 0.96602 0.95199 0.96421 1.69721 1.41595 1.38943 1.02922 0.86510 0.82387 0.80833 0.77852 1.20555 1.21048 1.19839 1.23053 0.86036 0.99330 0.99265 1.21622 0.95187 1.00619 0.97079 0.92776 0.92981 0.92768 0.92095 0.92476 0.92264 0.92221 0.91680 0.91938 0.91349 0.92183 0.95449 0.91307 0.91974 0.95052 0.92781 0.91233 0.77346 0.92417 0.93884 0.91134 0.91964 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.09 -0.80 2.72 -90.62 -0.25 -1.04 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.94 5.20 -26.73 -0.14 -1.08 16 5 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 6 C -0.12 -1.20 4.96 -26.73 -0.13 -1.33 16 7 C -0.09 -0.93 2.19 -90.64 -0.20 -1.13 16 8 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 9 C -0.11 -1.43 4.74 -26.73 -0.13 -1.56 16 10 C 0.04 0.70 4.56 -3.82 -0.02 0.68 16 11 N -0.51 -10.17 5.37 -229.97 -1.24 -11.41 16 12 C 0.03 0.67 5.73 -2.18 -0.01 0.66 16 13 C -0.12 -2.88 5.52 -25.35 -0.14 -3.02 16 14 C 0.25 6.46 1.05 -90.39 -0.09 6.36 16 15 O -0.59 -15.88 12.94 -35.23 -0.46 -16.33 16 16 C -0.54 -14.65 8.10 -34.44 -0.28 -14.93 16 17 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 18 C 0.07 1.88 4.93 -17.82 -0.09 1.80 16 19 N -0.89 -24.18 10.92 55.43 0.61 -23.57 16 20 Si 0.90 20.84 29.54 -169.99 -5.02 15.81 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.05 1.14 5.76 -2.18 -0.01 1.13 16 25 C -0.11 -1.05 4.48 -26.76 -0.12 -1.17 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.72 6.57 -51.93 -0.34 0.37 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.83 7.25 -51.93 -0.38 0.45 16 37 H 0.03 0.44 7.88 -51.93 -0.41 0.03 16 38 H 0.07 1.05 6.55 -51.93 -0.34 0.71 16 39 H 0.06 1.14 7.76 -51.93 -0.40 0.74 16 40 H 0.03 0.61 7.82 -51.93 -0.41 0.20 16 41 H 0.05 1.31 7.98 -51.92 -0.41 0.90 16 42 H 0.07 1.76 7.17 -51.93 -0.37 1.39 16 43 H 0.38 10.24 7.43 45.56 0.34 10.58 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.04 0.95 7.58 -51.93 -0.39 0.56 16 46 H 0.07 1.60 8.08 -51.93 -0.42 1.18 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -27.51 359.02 -10.69 -38.20 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.57 Total: 8.52 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.42 Total: -16.63 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.63 Total: -34.98 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.46 Total: -16.33 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.51 -10.69 -38.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.893 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds