Wall clock time and date at job start Tue Mar 31 2020 06:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.47166 * 2 1 4 4 C 1.52999 * 109.46971 * 239.99848 * 2 1 3 5 5 N 1.46901 * 109.47052 * 90.79525 * 4 2 1 6 6 C 1.47907 * 111.00205 * 73.14274 * 5 4 2 7 7 C 1.53996 * 107.05468 * 214.15714 * 6 5 4 8 8 C 1.54600 * 105.14148 * 1.22238 * 7 6 5 9 9 O 1.42901 * 110.72316 * 263.42212 * 8 7 6 10 10 C 1.50705 * 110.71976 * 140.31735 * 8 7 6 11 11 H 1.07998 * 119.99869 * 238.27347 * 10 8 7 12 12 C 1.37874 * 119.99896 * 58.28034 * 10 8 7 13 13 N 1.31509 * 120.00432 * 5.70127 * 12 10 8 14 14 Si 1.86801 * 119.99669 * 185.70772 * 12 10 8 15 15 H 1.48499 * 109.47389 * 94.96918 * 14 12 10 16 16 H 1.48503 * 109.46838 * 214.97001 * 14 12 10 17 17 H 1.48505 * 109.46878 * 334.96518 * 14 12 10 18 18 C 1.48535 * 110.99640 * 315.74546 * 5 4 2 19 19 C 1.52998 * 109.47102 * 119.99759 * 2 1 3 20 20 C 1.52999 * 109.47280 * 299.99899 * 19 2 1 21 21 C 1.52998 * 109.47280 * 179.97438 * 20 19 2 22 22 C 1.52996 * 109.47411 * 60.00296 * 21 20 19 23 23 C 1.53000 * 109.46919 * 300.00362 * 22 21 20 24 24 C 1.52998 * 109.47375 * 59.99616 * 23 22 21 25 25 H 1.08996 * 109.46791 * 308.07409 * 1 2 3 26 26 H 1.09000 * 109.46923 * 68.06757 * 1 2 3 27 27 H 1.08997 * 109.46950 * 188.07374 * 1 2 3 28 28 H 1.09002 * 109.46631 * 210.79071 * 4 2 1 29 29 H 1.08992 * 109.47372 * 330.79264 * 4 2 1 30 30 H 1.08999 * 109.91774 * 333.50889 * 6 5 4 31 31 H 1.08999 * 109.91616 * 94.80615 * 6 5 4 32 32 H 1.08995 * 110.31023 * 120.14417 * 7 6 5 33 33 H 1.09004 * 110.30370 * 242.30967 * 7 6 5 34 34 H 0.96694 * 113.99835 * 298.54690 * 9 8 7 35 35 H 0.96996 * 120.00407 * 180.02562 * 13 12 10 36 36 H 1.08999 * 110.66472 * 278.15707 * 18 5 4 37 37 H 1.08999 * 110.66796 * 41.29140 * 18 5 4 38 38 H 1.09000 * 109.47583 * 59.99801 * 19 2 1 39 39 H 1.09005 * 109.47068 * 59.99860 * 20 19 2 40 40 H 1.08996 * 109.47547 * 300.00094 * 20 19 2 41 41 H 1.09009 * 109.47240 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47086 * 299.99743 * 21 20 19 43 43 H 1.09006 * 109.46794 * 59.99671 * 22 21 20 44 44 H 1.08993 * 109.47793 * 179.97438 * 22 21 20 45 45 H 1.09004 * 109.46943 * 299.99826 * 23 22 21 46 46 H 1.09005 * 109.47330 * 179.97438 * 23 22 21 47 47 H 1.08999 * 109.47343 * 180.02562 * 24 23 22 48 48 H 1.08992 * 109.47577 * 60.00178 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.2214 0.2504 -2.3359 6 6 3.4085 1.0992 -2.0955 7 6 3.0856 2.4967 -2.6561 8 6 1.6404 2.3915 -3.1952 9 8 1.6426 2.1363 -4.6012 10 6 0.8626 3.6441 -2.8836 11 1 -0.0462 3.5850 -2.3031 12 6 1.3111 4.8654 -3.3398 13 7 2.3534 4.9264 -4.1395 14 14 0.4383 6.4337 -2.8219 15 1 1.1282 7.0183 -1.6440 16 1 0.4625 7.4070 -3.9432 17 1 -0.9697 6.1224 -2.4669 18 6 1.0670 1.1817 -2.4153 19 6 2.0401 -0.7212 1.2493 20 6 1.5301 0.0001 2.4985 21 6 2.0396 -0.7215 3.7477 22 6 3.5695 -0.7220 3.7481 23 6 4.0795 -1.4432 2.4989 24 6 3.5701 -0.7217 1.2496 25 1 -0.3633 0.6337 0.8090 26 1 -0.3633 0.3838 -0.9533 27 1 -0.3633 -1.0175 0.1443 28 1 2.9935 -1.2010 -1.0279 29 1 1.3155 -1.4763 -1.5541 30 1 3.6073 1.1651 -1.0258 31 1 4.2734 0.6828 -2.6117 32 1 3.1406 3.2439 -1.8645 33 1 3.7732 2.7485 -3.4635 34 1 2.0614 2.8318 -5.1265 35 1 2.6691 5.7856 -4.4601 36 1 0.2424 0.7264 -2.9637 37 1 0.7470 1.4836 -1.4180 38 1 1.6767 -1.7489 1.2494 39 1 0.4400 0.0001 2.4985 40 1 1.8934 1.0277 2.4985 41 1 1.6766 -0.2073 4.6378 42 1 1.6758 -1.7490 3.7476 43 1 3.9332 0.3056 3.7483 44 1 3.9325 -1.2356 4.6383 45 1 3.7158 -2.4708 2.4987 46 1 5.1696 -1.4433 2.4989 47 1 3.9331 -1.2358 0.3597 48 1 3.9337 0.3058 1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:27 Heat of formation + Delta-G solvation = -70.786717 kcal Electronic energy + Delta-G solvation = -24102.665116 eV Core-core repulsion = 20963.187370 eV Total energy + Delta-G solvation = -3139.477747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.74960 -38.02280 -35.39554 -33.28182 -32.08185 -30.93743 -29.87937 -28.87262 -27.63096 -25.85574 -23.95922 -22.76498 -22.31278 -20.54823 -19.83487 -19.57487 -19.08422 -17.02379 -15.82741 -15.12351 -15.05255 -14.76213 -14.24851 -14.15012 -14.02835 -13.72003 -13.44919 -13.27502 -12.94257 -12.57886 -12.32407 -12.15950 -11.86180 -11.57681 -11.42296 -11.25687 -11.17397 -11.08248 -11.06108 -10.89076 -10.69362 -10.57840 -10.48677 -10.37324 -10.30229 -10.25475 -9.95406 -9.76430 -9.62559 -9.06195 -8.52139 -8.02514 -7.48506 -6.17298 -4.24582 3.22835 3.30913 3.34372 4.32336 4.59541 4.66836 4.70814 4.88918 5.06271 5.11513 5.14182 5.29569 5.37927 5.39184 5.47324 5.50051 5.60717 5.67040 5.74297 5.80090 5.88788 5.93857 5.95837 5.99801 6.05161 6.11386 6.14151 6.16934 6.19164 6.22057 6.26069 6.29802 6.38570 6.44374 6.54134 6.58996 6.72369 6.75117 6.97408 7.12243 7.48237 7.56444 7.66010 7.84307 7.89746 8.26387 8.78333 9.43756 9.63740 10.89878 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.004758 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.770246 B = 5883.856049 C = 6323.222097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 H 0.077 0.923 4 C 0.045 3.955 5 N -0.512 5.512 6 C 0.034 3.966 7 C -0.129 4.129 8 C 0.254 3.746 9 O -0.582 6.582 10 C -0.537 4.537 11 H 0.060 0.940 12 C 0.072 3.928 13 N -0.893 5.893 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.041 3.959 19 C -0.075 4.075 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.119 4.119 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.376 0.624 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -10.363 12.890 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 H 0.096 0.904 4 C -0.084 4.084 5 N -0.235 5.235 6 C -0.094 4.094 7 C -0.167 4.167 8 C 0.214 3.786 9 O -0.389 6.389 10 C -0.575 4.575 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.086 4.086 19 C -0.094 4.094 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.225 0.775 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.719 -11.101 12.490 16.798 hybrid contribution -0.124 1.952 0.951 2.175 sum 1.595 -9.148 13.441 16.337 Atomic orbital electron populations 1.22211 0.95192 1.01121 1.02830 1.21884 0.96324 1.00835 0.95280 0.90430 1.22522 1.00739 0.96050 0.89086 1.64937 1.03691 1.15150 1.39697 1.22913 0.93635 0.95084 0.97772 1.22902 1.00780 0.92661 1.00398 1.19402 0.89791 0.89981 0.79447 1.86148 1.83395 1.50010 1.19378 1.21625 1.09934 0.91584 1.34385 0.92226 1.24984 0.94728 0.99181 0.94158 1.69741 1.24993 1.25878 1.32602 0.86532 0.80099 0.82840 0.78254 1.20669 1.21084 1.19757 1.23560 0.93063 0.92861 0.99146 1.21135 0.94906 0.99258 0.94105 1.21635 1.00430 0.99427 0.93876 1.21529 0.95594 1.00536 0.97908 1.21537 0.95872 1.00729 0.97585 1.21524 0.99896 0.99258 0.94843 1.21708 0.95545 1.00903 0.97480 0.92968 0.90932 0.93242 0.91222 0.91446 0.95012 0.92243 0.92377 0.91739 0.77539 0.92458 0.91448 0.91587 0.91576 0.91827 0.92060 0.92446 0.92299 0.92110 0.92549 0.92270 0.92353 0.91519 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 7.70 37.16 0.29 -1.89 16 2 C -0.12 -1.76 1.15 -90.62 -0.10 -1.86 16 3 H 0.08 1.31 5.83 -51.93 -0.30 1.00 16 4 C 0.04 0.70 5.18 -3.82 -0.02 0.68 16 5 N -0.51 -10.06 5.54 -230.45 -1.28 -11.34 16 6 C 0.03 0.67 6.24 -2.75 -0.02 0.65 16 7 C -0.13 -3.01 5.22 -25.37 -0.13 -3.14 16 8 C 0.25 6.38 0.95 -89.90 -0.09 6.30 16 9 O -0.58 -15.67 13.10 -35.23 -0.46 -16.13 16 10 C -0.54 -14.45 8.15 -34.44 -0.28 -14.73 16 11 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 12 C 0.07 1.91 5.23 -17.82 -0.09 1.82 16 13 N -0.89 -24.09 11.04 55.43 0.61 -23.48 16 14 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 18 C 0.04 0.88 4.03 -1.90 -0.01 0.87 16 19 C -0.08 -0.88 1.76 -90.62 -0.16 -1.04 16 20 C -0.12 -1.29 4.86 -26.73 -0.13 -1.42 16 21 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 22 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 23 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 24 C -0.12 -1.37 4.95 -26.73 -0.13 -1.50 16 25 H 0.05 0.69 6.89 -51.93 -0.36 0.33 16 26 H 0.07 1.14 5.25 -51.93 -0.27 0.87 16 27 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.07 1.01 5.44 -51.93 -0.28 0.73 16 29 H 0.07 1.03 7.82 -51.93 -0.41 0.62 16 30 H 0.03 0.57 6.64 -51.93 -0.34 0.23 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.42 7.83 -51.93 -0.41 1.01 16 33 H 0.06 1.60 7.98 -51.93 -0.41 1.18 16 34 H 0.38 10.18 7.51 45.56 0.34 10.53 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.07 1.51 8.00 -51.93 -0.42 1.10 16 37 H 0.07 1.36 4.06 -51.93 -0.21 1.15 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.70 6.62 -51.93 -0.34 0.36 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.79 5.99 -51.93 -0.31 0.47 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -27.20 345.24 -10.22 -37.41 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -7.92 Total: 11.78 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.35 Total: -19.15 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.66 Total: -34.81 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.46 Total: -16.13 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.20 -10.22 -37.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.376 kcal (2) G-P(sol) polarization free energy of solvation -27.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds