Wall clock time and date at job start Tue Mar 31 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46534 * 2 1 4 4 C 1.52998 * 109.47237 * 120.00012 * 2 1 3 5 5 N 1.46903 * 109.47209 * 187.18335 * 4 2 1 6 6 C 1.47445 * 110.99913 * 66.33810 * 5 4 2 7 7 C 1.54316 * 107.23318 * 123.25628 * 6 5 4 8 8 C 1.55147 * 103.01825 * 22.28860 * 7 6 5 9 9 O 1.42895 * 110.99352 * 82.47281 * 8 7 6 10 10 C 1.50696 * 110.99215 * 206.25594 * 8 7 6 11 11 H 1.08001 * 120.00353 * 118.54456 * 10 8 7 12 12 C 1.37883 * 119.99586 * 298.54274 * 10 8 7 13 13 N 1.31513 * 120.00043 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 119.99614 * 180.02562 * 12 10 8 15 15 H 1.48491 * 109.47319 * 59.99811 * 14 12 10 16 16 H 1.48503 * 109.46803 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47018 * 299.99557 * 14 12 10 18 18 C 1.47842 * 111.00276 * 187.18233 * 5 4 2 19 19 C 1.52998 * 109.47226 * 240.00330 * 2 1 3 20 20 C 1.53000 * 109.47110 * 53.53342 * 19 2 1 21 21 C 1.52998 * 109.47110 * 179.97438 * 20 19 2 22 22 C 1.53005 * 109.47105 * 299.99930 * 21 20 19 23 23 C 1.53000 * 109.47080 * 60.00051 * 22 21 20 24 24 C 1.52998 * 109.47110 * 299.99945 * 23 22 21 25 25 H 1.09001 * 109.47450 * 64.33684 * 1 2 3 26 26 H 1.08999 * 109.47001 * 184.33083 * 1 2 3 27 27 H 1.09002 * 109.47170 * 304.32966 * 1 2 3 28 28 H 1.08996 * 109.46946 * 307.18355 * 4 2 1 29 29 H 1.09002 * 109.46763 * 67.18604 * 4 2 1 30 30 H 1.08998 * 109.89468 * 242.66606 * 6 5 4 31 31 H 1.09003 * 109.88817 * 3.85762 * 6 5 4 32 32 H 1.08996 * 110.70667 * 140.66441 * 7 6 5 33 33 H 1.08994 * 110.70895 * 263.73291 * 7 6 5 34 34 H 0.96703 * 113.99860 * 61.45259 * 9 8 7 35 35 H 0.97007 * 119.99609 * 179.97438 * 13 12 10 36 36 H 1.09002 * 110.37166 * 332.47063 * 18 5 4 37 37 H 1.08998 * 110.37246 * 94.80484 * 18 5 4 38 38 H 1.08998 * 109.47152 * 293.53681 * 19 2 1 39 39 H 1.08995 * 109.47249 * 300.00197 * 20 19 2 40 40 H 1.09008 * 109.47360 * 59.99995 * 20 19 2 41 41 H 1.09008 * 109.47412 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.47152 * 60.00339 * 21 20 19 43 43 H 1.08998 * 109.47006 * 299.99928 * 22 21 20 44 44 H 1.08998 * 109.47053 * 180.02562 * 22 21 20 45 45 H 1.08995 * 109.47249 * 179.97438 * 23 22 21 46 46 H 1.09008 * 109.46894 * 59.99692 * 23 22 21 47 47 H 1.08998 * 109.47130 * 300.00218 * 24 23 22 48 48 H 1.08996 * 109.47055 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.4988 -0.5731 1.3389 6 6 3.8735 0.8332 1.5757 7 6 4.7150 0.8707 2.8686 8 6 5.2474 -0.5822 2.9814 9 8 6.4066 -0.7673 2.1666 10 6 5.5364 -0.9415 4.4160 11 1 5.0020 -1.7529 4.8878 12 6 6.4831 -0.2343 5.1265 13 7 7.1335 0.7540 4.5522 14 14 6.8419 -0.6801 6.9047 15 1 7.3152 -2.0858 6.9768 16 1 7.8922 0.2234 7.4393 17 1 5.6039 -0.5326 7.7114 18 6 4.0487 -1.3978 2.4358 19 6 2.0400 -0.7212 -1.2493 20 6 1.4017 -0.0998 -2.4932 21 6 1.9122 -0.8205 -3.7425 22 6 3.4336 -0.6807 -3.8260 23 6 4.0719 -1.3021 -2.5821 24 6 3.5614 -0.5814 -1.3328 25 1 -0.3634 0.4451 -0.9263 26 1 -0.3633 -1.0247 0.0776 27 1 -0.3633 0.5796 0.8487 28 1 1.5756 -0.2870 2.1345 29 1 1.7854 -1.7793 1.1872 30 1 4.4634 1.2059 0.7383 31 1 2.9765 1.4401 1.6994 32 1 5.5397 1.5767 2.7714 33 1 4.0922 1.1233 3.7267 34 1 7.1536 -0.2042 2.4117 35 1 7.7993 1.2517 5.0522 36 1 3.3003 -1.5402 3.2154 37 1 4.3874 -2.3607 2.0534 38 1 1.7742 -1.7768 -1.1934 39 1 0.3179 -0.1989 -2.4334 40 1 1.6674 0.9559 -2.5491 41 1 1.4578 -0.3775 -4.6288 42 1 1.6468 -1.8762 -3.6868 43 1 3.6989 0.3750 -3.8817 44 1 3.7972 -1.1938 -4.7163 45 1 5.1557 -1.2030 -2.6418 46 1 3.8064 -2.3579 -2.5264 47 1 3.8267 0.4743 -1.3885 48 1 4.0157 -1.0244 -0.4466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:32 Heat of formation + Delta-G solvation = -75.035677 kcal Electronic energy + Delta-G solvation = -24058.632535 eV Core-core repulsion = 20918.970539 eV Total energy + Delta-G solvation = -3139.661995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.41747 -37.85088 -35.31021 -33.53615 -32.10828 -30.55540 -29.54170 -28.74541 -28.06927 -25.66894 -23.95636 -22.59405 -22.07322 -20.55589 -19.59946 -19.47389 -18.87948 -17.01068 -15.90365 -15.17878 -14.86802 -14.70784 -14.13757 -14.07202 -13.82434 -13.78352 -13.35671 -13.09717 -12.75667 -12.43049 -12.28120 -12.04177 -11.74435 -11.55384 -11.38804 -11.29850 -11.20429 -10.97803 -10.93573 -10.86068 -10.76876 -10.60657 -10.44062 -10.33194 -10.20898 -10.00214 -9.84135 -9.61135 -9.51967 -9.13335 -8.57290 -8.04746 -7.35541 -6.19167 -4.27271 3.24081 3.29107 3.32044 4.30287 4.66318 4.80266 4.91948 4.99970 5.08116 5.19507 5.29892 5.48145 5.52997 5.67218 5.69282 5.75867 5.76275 5.82494 5.83541 5.88831 5.90077 5.98819 6.02842 6.08034 6.12879 6.16218 6.21849 6.28005 6.31277 6.33339 6.40428 6.51213 6.52853 6.59519 6.69273 6.72941 6.89929 6.93175 7.09503 7.39617 7.46116 7.53040 7.67890 7.81835 7.86549 8.20085 8.74725 9.41339 9.54600 10.87506 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029207 B = 0.004325 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.439919 B = 6473.137611 C = 6981.392421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 H 0.069 0.931 4 C 0.055 3.945 5 N -0.514 5.514 6 C 0.043 3.957 7 C -0.144 4.144 8 C 0.254 3.746 9 O -0.579 6.579 10 C -0.537 4.537 11 H 0.059 0.941 12 C 0.073 3.927 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.055 3.945 19 C -0.066 4.066 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.130 4.130 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.376 0.624 35 H 0.266 0.734 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 -0.271 -11.613 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.074 4.074 5 N -0.238 5.238 6 C -0.085 4.085 7 C -0.183 4.183 8 C 0.213 3.787 9 O -0.386 6.386 10 C -0.576 4.576 11 H 0.077 0.923 12 C -0.130 4.130 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.072 4.072 19 C -0.084 4.084 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.168 4.168 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.225 0.775 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.297 -0.738 -12.342 16.090 hybrid contribution 0.134 0.631 2.043 2.142 sum -10.163 -0.107 -10.299 14.469 Atomic orbital electron populations 1.21901 0.95941 1.01494 1.01342 1.21218 0.94250 0.99964 0.94927 0.91258 1.22306 0.89256 0.99903 0.95931 1.63672 1.08857 1.07725 1.43532 1.22850 0.97897 0.88772 0.98944 1.23244 0.99018 1.01932 0.94131 1.19493 0.82530 0.88639 0.88020 1.86139 1.25121 1.67414 1.59938 1.21530 1.22183 1.17251 0.96605 0.92283 1.24984 0.95247 0.94220 0.98535 1.69732 1.25454 1.20761 1.37430 0.86564 0.77997 0.78524 0.84366 1.20063 1.21169 1.20244 1.23013 0.96117 0.97301 0.90748 1.21003 0.96393 0.98678 0.92354 1.21723 0.99387 0.99614 0.94836 1.21503 0.96015 1.00360 0.97504 1.21560 0.95312 1.00741 0.98095 1.21563 0.99555 0.99472 0.95052 1.22115 0.94449 1.00465 0.99752 0.92355 0.92940 0.93228 0.95373 0.91565 0.91712 0.94638 0.90618 0.92883 0.77500 0.92382 0.93705 0.91222 0.92125 0.92394 0.92518 0.92957 0.92448 0.92491 0.93065 0.92533 0.92812 0.93424 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.80 37.16 0.33 -1.32 16 2 C -0.08 -1.12 2.05 -90.62 -0.19 -1.31 16 3 H 0.07 0.99 6.76 -51.93 -0.35 0.64 16 4 C 0.05 0.84 3.88 -3.82 -0.01 0.83 16 5 N -0.51 -9.42 1.85 -231.25 -0.43 -9.85 16 6 C 0.04 0.82 5.76 -2.84 -0.02 0.80 16 7 C -0.14 -3.29 5.37 -24.91 -0.13 -3.42 16 8 C 0.25 6.21 0.87 -89.63 -0.08 6.13 16 9 O -0.58 -14.95 13.16 -35.23 -0.46 -15.41 16 10 C -0.54 -14.36 8.27 -34.44 -0.28 -14.65 16 11 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 12 C 0.07 1.92 5.29 -17.82 -0.09 1.82 16 13 N -0.89 -23.83 10.75 55.43 0.60 -23.23 16 14 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 C 0.06 1.18 5.88 -2.30 -0.01 1.17 16 19 C -0.07 -0.85 1.78 -90.62 -0.16 -1.01 16 20 C -0.12 -1.33 4.68 -26.73 -0.12 -1.46 16 21 C -0.12 -1.25 5.92 -26.73 -0.16 -1.40 16 22 C -0.12 -1.38 5.92 -26.73 -0.16 -1.53 16 23 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 24 C -0.13 -1.92 4.28 -26.73 -0.11 -2.04 16 25 H 0.06 0.58 6.07 -51.93 -0.32 0.27 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 29 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 30 H 0.06 1.25 7.84 -51.93 -0.41 0.84 16 31 H 0.04 0.63 6.79 -51.93 -0.35 0.27 16 32 H 0.08 1.85 7.54 -51.93 -0.39 1.45 16 33 H 0.05 1.25 8.04 -51.93 -0.42 0.84 16 34 H 0.38 9.84 7.56 45.56 0.34 10.19 16 35 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.04 0.94 7.70 -51.93 -0.40 0.54 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.06 0.60 6.23 -51.93 -0.32 0.27 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 47 H 0.05 0.74 7.91 -51.93 -0.41 0.33 16 48 H 0.13 2.20 5.19 -51.93 -0.27 1.93 16 LS Contribution 350.70 15.07 5.28 5.28 Total: -1.00 -25.89 350.70 -9.73 -35.62 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -8.33 Total: 11.09 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.37 Total: -19.13 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.17 Total: -33.08 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.46 Total: -15.41 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -25.89 -9.73 -35.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.417 kcal (2) G-P(sol) polarization free energy of solvation -25.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds