Wall clock time and date at job start Tue Mar 31 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99802 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 8 8 C 1.50706 * 109.46783 * 179.97438 * 6 5 4 9 9 O 1.21273 * 120.00140 * 239.99787 * 8 6 5 10 10 N 1.34779 * 119.99767 * 60.00310 * 8 6 5 11 11 C 1.46496 * 120.00054 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47415 * 300.00058 * 12 11 10 14 14 C 1.52996 * 109.47165 * 60.00080 * 12 11 10 15 15 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99890 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00362 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47177 * 89.99898 * 20 18 16 22 22 H 1.48505 * 109.47036 * 210.00183 * 20 18 16 23 23 H 1.48499 * 109.46776 * 329.99672 * 20 18 16 24 24 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 25 25 C 1.52997 * 109.47060 * 299.99657 * 24 6 5 26 26 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 27 27 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 28 28 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 30 30 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 31 31 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 33 33 H 0.97005 * 119.99680 * 359.97438 * 10 8 6 34 34 H 1.08998 * 109.47245 * 300.00495 * 11 10 8 35 35 H 1.09002 * 109.47021 * 59.99873 * 11 10 8 36 36 H 1.09000 * 109.46986 * 59.99882 * 13 12 11 37 37 H 1.08996 * 109.47407 * 179.97438 * 13 12 11 38 38 H 1.09002 * 109.47070 * 300.00053 * 13 12 11 39 39 H 1.09001 * 109.46997 * 59.99740 * 14 12 11 40 40 H 1.09000 * 109.47380 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.47631 * 300.00497 * 14 12 11 42 42 H 1.09001 * 109.47289 * 299.99925 * 15 12 11 43 43 H 1.09002 * 109.47153 * 60.00008 * 15 12 11 44 44 H 0.96994 * 119.99814 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.47398 * 59.99826 * 24 6 5 46 46 H 1.09001 * 109.47194 * 180.02562 * 24 6 5 47 47 H 1.08996 * 109.47853 * 180.02562 * 25 24 6 48 48 H 1.09002 * 109.47153 * 300.00319 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 6 5.5876 -1.4405 0.0005 9 8 6.1936 -0.9150 -0.9090 10 7 6.2618 -2.0237 1.0113 11 6 7.7268 -2.0232 1.0112 12 6 8.2371 -2.7435 2.2608 13 6 7.7271 -2.0217 3.5097 14 6 7.7277 -4.1862 2.2617 15 6 9.7671 -2.7424 2.2609 16 6 10.2699 -3.4524 3.4914 17 1 9.5683 -3.8630 4.2025 18 6 11.6255 -3.5770 3.7100 19 7 12.0643 -4.1962 4.7842 20 14 12.8390 -2.8649 2.4812 21 1 13.1589 -1.4642 2.8563 22 1 14.0832 -3.6757 2.4877 23 1 12.2396 -2.8891 1.1228 24 6 3.5706 -0.7203 -1.2488 25 6 2.0406 -0.7208 -1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -1.7489 1.2493 30 1 1.6766 -0.2074 2.1392 31 1 3.9333 -1.2341 2.1399 32 1 3.9329 0.3071 1.2498 33 1 5.7770 -2.4438 1.7390 34 1 8.0902 -2.5370 0.1212 35 1 8.0897 -0.9954 1.0110 36 1 6.6371 -2.0221 3.5098 37 1 8.0903 -2.5351 4.3999 38 1 8.0900 -0.9939 3.5091 39 1 8.0911 -4.7004 1.3720 40 1 8.0917 -4.6995 3.1517 41 1 6.6377 -4.1867 2.2618 42 1 10.1310 -3.2564 1.3712 43 1 10.1297 -1.7145 2.2605 44 1 13.0180 -4.2841 4.9377 45 1 3.9336 0.3075 -1.2486 46 1 3.9339 -1.2342 -2.1388 47 1 1.6772 -0.2074 -2.1394 48 1 1.6776 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593157703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:26 Heat of formation + Delta-G solvation = -90.052940 kcal Electronic energy + Delta-G solvation = -22859.811849 eV Core-core repulsion = 19719.498656 eV Total energy + Delta-G solvation = -3140.313193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.24832 -38.34061 -37.07163 -33.71502 -32.90425 -32.02858 -30.94647 -27.98960 -27.37984 -26.56586 -25.80909 -22.90075 -22.84687 -21.78412 -20.23367 -19.81507 -18.27449 -17.05594 -16.66956 -15.90415 -15.45661 -14.72390 -14.52018 -14.47728 -14.24564 -13.95667 -13.75965 -13.45442 -13.30599 -12.77090 -12.67736 -12.56182 -12.39679 -12.27155 -12.19601 -11.73427 -11.34974 -11.25141 -11.17760 -11.11219 -11.01564 -10.90194 -10.62324 -10.57933 -10.48588 -10.25525 -9.97380 -9.80881 -9.72066 -9.34512 -8.99496 -8.76606 -8.53905 -6.04734 -4.01956 2.80050 3.31327 3.39150 3.41514 3.43633 4.38520 4.42171 4.45392 4.48795 4.83687 4.85246 5.01029 5.14680 5.22353 5.25723 5.27968 5.29608 5.36964 5.41406 5.52051 5.53021 5.58805 5.63387 5.65534 5.79813 5.86116 5.92984 5.99717 6.00124 6.10799 6.11963 6.12274 6.20216 6.25467 6.31498 6.49802 6.58855 6.71320 6.90707 7.00807 7.04530 7.20021 7.36456 7.70214 7.80121 8.41392 8.52633 8.99281 9.58096 11.08003 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037701 B = 0.003172 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.517295 B = 8824.823375 C = 9229.029065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.106 4.106 7 H 0.094 0.906 8 C 0.510 3.490 9 O -0.547 6.547 10 N -0.721 5.721 11 C 0.125 3.875 12 C -0.063 4.063 13 C -0.128 4.128 14 C -0.128 4.128 15 C -0.002 4.002 16 C -0.511 4.511 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 C -0.098 4.098 25 C -0.114 4.114 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.018 0.982 43 H 0.013 0.987 44 H 0.262 0.738 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.353 6.146 -8.135 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.127 4.127 7 H 0.112 0.888 8 C 0.296 3.704 9 O -0.425 6.425 10 N -0.373 5.373 11 C 0.002 3.998 12 C -0.063 4.063 13 C -0.185 4.185 14 C -0.186 4.186 15 C -0.040 4.040 16 C -0.548 4.548 17 H 0.096 0.904 18 C -0.134 4.134 19 N -0.543 5.543 20 Si 0.702 3.298 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.136 4.136 25 C -0.151 4.151 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.234 0.766 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.731 6.464 -8.693 24.282 hybrid contribution 0.680 0.100 -0.180 0.710 sum -21.051 6.564 -8.873 23.769 Atomic orbital electron populations 1.21831 0.95337 1.01741 1.01553 1.21180 0.95290 0.99857 0.95051 0.91160 1.21588 0.94741 1.00922 0.97689 1.21531 0.96006 1.01178 0.96182 1.21353 0.91815 1.01851 0.97723 0.88785 1.20648 0.89831 0.78017 0.81889 1.90678 1.70496 1.45263 1.36082 1.46205 1.08219 1.57975 1.24859 1.21619 0.78177 1.00807 0.99194 1.20681 0.98579 0.94636 0.92420 1.21771 0.97625 1.00206 0.98943 1.21768 0.97625 0.96177 1.02987 1.19593 0.89477 0.96831 0.98117 1.21077 0.92325 1.35599 1.05836 0.90398 1.25000 0.98453 0.94894 0.95102 1.69900 1.14380 1.43257 1.26785 0.86858 0.80905 0.79270 0.82742 1.20377 1.21501 1.18994 1.21326 0.94555 1.01333 0.96413 1.21622 0.95316 1.00672 0.97526 0.92769 0.92800 0.92726 0.91718 0.91649 0.91320 0.91330 0.76580 0.91953 0.91963 0.95040 0.90897 0.93436 0.93434 0.90881 0.95030 0.96388 0.96835 0.92795 0.91250 0.91287 0.91791 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.20 37.16 0.34 -0.56 16 2 C -0.10 -0.69 2.72 -90.62 -0.25 -0.93 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -0.80 5.20 -26.73 -0.14 -0.94 16 5 C -0.11 -0.97 5.10 -26.73 -0.14 -1.11 16 6 C -0.11 -1.08 2.53 -91.77 -0.23 -1.32 16 7 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 8 C 0.51 7.27 7.15 -10.98 -0.08 7.19 16 9 O -0.55 -10.00 15.98 5.56 0.09 -9.91 16 10 N -0.72 -9.98 4.85 -60.30 -0.29 -10.28 16 11 C 0.13 2.11 4.56 -4.05 -0.02 2.09 16 12 C -0.06 -1.14 0.54 -154.51 -0.08 -1.23 16 13 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 16 C -0.51 -13.64 8.20 -34.44 -0.28 -13.93 16 17 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 20 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 24 C -0.10 -0.99 4.49 -26.73 -0.12 -1.11 16 25 C -0.11 -0.88 5.21 -26.73 -0.14 -1.02 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 4.68 5.58 -40.82 -0.23 4.45 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 37 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 41 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 42 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 43 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -30.67 361.88 -8.39 -39.06 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -9.03 Total: 0.26 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.72 Total: -15.03 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.48 Total: -36.73 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.67 -8.39 -39.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593157703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.997 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds