Wall clock time and date at job start Tue Mar 31 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47464 * 2 1 4 4 C 1.46497 * 119.99703 * 269.99949 * 3 2 1 5 5 C 1.50704 * 109.47266 * 270.00098 * 4 3 2 6 6 H 1.08000 * 119.99925 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99990 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99898 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00207 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47288 * 90.00072 * 9 7 5 11 11 H 1.48501 * 109.47268 * 210.00277 * 9 7 5 12 12 H 1.48498 * 109.47123 * 329.99891 * 9 7 5 13 13 C 1.34775 * 120.00095 * 90.00312 * 3 2 1 14 14 O 1.21282 * 119.99905 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00101 * 359.97438 * 13 3 2 16 16 C 1.52995 * 109.47153 * 180.02562 * 15 13 3 17 17 C 1.53003 * 109.47154 * 180.02562 * 16 15 13 18 18 C 1.54065 * 108.87686 * 297.97781 * 17 16 15 19 19 C 1.54066 * 112.81762 * 197.50425 * 18 17 16 20 20 C 1.50470 * 112.49875 * 318.28617 * 19 18 17 21 21 C 1.54246 * 108.51998 * 94.14981 * 20 19 18 22 22 C 1.45537 * 112.40731 * 280.01038 * 21 20 19 23 23 C 1.50473 * 108.87636 * 175.00284 * 17 16 15 24 24 H 1.08998 * 109.47572 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46922 * 300.00646 * 1 2 3 26 26 H 1.09002 * 109.46908 * 59.99584 * 1 2 3 27 27 H 1.09000 * 109.47353 * 239.99493 * 2 1 3 28 28 H 1.09005 * 109.47177 * 119.99980 * 2 1 3 29 29 H 1.08998 * 109.47267 * 29.99886 * 4 3 2 30 30 H 1.08994 * 109.47028 * 149.99865 * 4 3 2 31 31 H 0.96997 * 120.00248 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46758 * 60.00291 * 15 13 3 33 33 H 1.08998 * 109.47194 * 300.00429 * 15 13 3 34 34 H 1.09009 * 109.47084 * 60.00274 * 16 15 13 35 35 H 1.08995 * 109.47404 * 300.00730 * 16 15 13 36 36 H 1.09002 * 108.85122 * 56.44317 * 17 16 15 37 37 H 1.09005 * 108.81720 * 318.36964 * 18 17 16 38 38 H 1.09004 * 108.81387 * 76.75211 * 18 17 16 39 39 H 1.08997 * 108.87949 * 197.51000 * 19 18 17 40 40 H 1.09001 * 108.87760 * 79.06417 * 19 18 17 41 41 H 1.09003 * 109.63195 * 334.43897 * 20 19 18 42 42 H 1.09001 * 109.62960 * 213.85940 * 20 19 18 43 43 H 1.09001 * 108.89247 * 40.76541 * 21 20 19 44 44 H 1.09004 * 108.89281 * 159.35535 * 21 20 19 45 45 H 1.09000 * 108.89458 * 182.68905 * 22 21 20 46 46 H 1.08995 * 108.89787 * 301.28165 * 22 21 20 47 47 H 1.09006 * 109.62936 * 95.21889 * 23 17 16 48 48 H 1.08998 * 109.78811 * 334.73404 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1494 2.3902 -2.8775 8 7 5.3917 2.1839 -3.2569 9 14 3.0132 3.4357 -3.9288 10 1 3.1159 4.8559 -3.5071 11 1 3.4067 3.3134 -5.3555 12 1 1.6136 2.9691 -3.7597 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9914 1.3064 2.4723 16 6 2.3224 2.2439 3.6352 17 6 2.0675 1.5226 4.9602 18 6 0.5733 1.1580 5.0499 19 6 0.1244 0.8262 6.4858 20 6 1.1301 -0.0154 7.2236 21 6 2.0514 0.9195 8.0337 22 6 3.0905 1.5226 7.2123 23 6 2.5124 2.4101 6.0910 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6876 -2.0284 30 1 2.0956 3.1409 -1.1385 31 1 5.7177 2.5742 -4.0828 32 1 2.6213 0.4187 2.5302 33 1 0.9433 1.0126 2.5299 34 1 1.6922 3.1314 3.5771 35 1 3.3704 2.5381 3.5777 36 1 2.6549 0.6047 4.9802 37 1 -0.0162 1.9980 4.6824 38 1 0.3841 0.2922 4.4152 39 1 -0.8226 0.2883 6.4439 40 1 -0.0251 1.7573 7.0326 41 1 1.7240 -0.5862 6.5097 42 1 0.6125 -0.6956 7.9000 43 1 1.4482 1.7115 8.4776 44 1 2.5227 0.3459 8.8317 45 1 3.7340 2.1310 7.8477 46 1 3.6878 0.7304 6.7609 47 1 1.6601 2.9727 6.4721 48 1 3.2788 3.1005 5.7387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594243362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:36 Heat of formation + Delta-G solvation = -74.763257 kcal Electronic energy + Delta-G solvation = -22980.623175 eV Core-core repulsion = 19840.972993 eV Total energy + Delta-G solvation = -3139.650182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.62277 -38.80653 -35.42219 -34.50090 -32.68884 -32.41597 -30.55928 -30.05519 -27.69770 -25.46693 -24.80516 -22.94071 -22.73836 -21.37341 -20.66661 -19.03847 -18.16488 -16.89725 -16.47406 -15.68492 -15.53870 -15.32392 -14.82243 -14.57026 -14.04000 -13.99977 -13.46006 -13.41688 -13.17142 -12.92368 -12.69375 -12.42179 -12.35748 -12.19833 -11.97138 -11.78933 -11.55800 -11.23499 -11.11799 -10.92328 -10.88996 -10.73467 -10.60995 -10.50290 -10.46866 -10.26222 -10.19315 -10.17455 -10.12411 -9.51099 -8.89526 -8.56453 -7.66045 -6.06354 -4.04633 3.30676 3.36663 3.38524 3.44660 3.89548 4.41758 4.44489 4.52455 4.68870 4.91213 4.97404 5.05625 5.10704 5.23326 5.24086 5.27499 5.29065 5.35347 5.40216 5.49036 5.58876 5.60740 5.71465 5.71869 5.84363 5.85559 5.92396 5.98033 6.01258 6.05011 6.07028 6.09024 6.16843 6.17291 6.18205 6.24784 6.34207 6.43379 6.47381 6.57257 6.76335 6.99605 7.41877 7.64818 8.33696 8.50656 8.96461 9.07462 9.54473 11.07186 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027852 B = 0.003524 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.077561 B = 7943.763517 C = 8427.596509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.216 3.784 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.505 3.495 14 O -0.544 6.544 15 C -0.140 4.140 16 C -0.100 4.100 17 C -0.085 4.085 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.113 4.113 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 -6.076 19.586 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.327 5.327 4 C 0.095 3.905 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.421 6.421 15 C -0.180 4.180 16 C -0.138 4.138 17 C -0.104 4.104 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.150 4.150 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.054 -5.425 19.410 22.986 hybrid contribution -0.436 0.407 -0.779 0.981 sum -11.490 -5.018 18.631 22.457 Atomic orbital electron populations 1.22230 0.96902 1.01473 1.02166 1.21415 0.93290 0.83980 1.03011 1.47962 1.64268 1.13342 1.07144 1.19615 0.97183 0.93362 0.80343 1.21351 0.95398 1.32739 1.07043 0.90825 1.24865 0.95000 0.95838 0.97383 1.69901 1.15135 1.45125 1.23586 0.86843 0.81475 0.81616 0.79710 1.19931 1.21101 1.19101 1.20494 0.77984 0.86968 0.85308 1.90654 1.45723 1.18384 1.87369 1.21772 1.02916 0.99962 0.93309 1.21533 1.02794 0.97817 0.91618 1.20999 0.95955 0.98753 0.94652 1.22027 0.95779 1.01225 0.96064 1.21341 0.98263 0.99782 0.96180 1.21346 0.97582 0.97782 0.98843 1.20489 0.97796 0.98830 0.98244 1.20490 0.98163 0.99309 0.97712 1.21406 1.00719 0.97750 0.95164 0.92064 0.92968 0.92335 0.89930 0.91359 0.95435 0.94722 0.92609 0.89651 0.89650 0.91458 0.91145 0.91391 0.92140 0.92191 0.92666 0.92294 0.91494 0.92380 0.92405 0.92743 0.92564 0.92131 0.91847 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.15 0.38 -1.78 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.40 2.46 -175.06 -0.43 -12.83 16 4 C 0.22 5.38 4.23 -5.19 -0.02 5.36 16 5 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 6 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 9 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.51 10.39 7.67 -10.99 -0.08 10.30 16 14 O -0.54 -13.60 15.56 5.56 0.09 -13.51 16 15 C -0.14 -2.02 3.97 -27.89 -0.11 -2.13 16 16 C -0.10 -1.36 3.71 -26.73 -0.10 -1.46 16 17 C -0.09 -0.88 1.71 -91.32 -0.16 -1.04 16 18 C -0.11 -1.05 4.42 -25.62 -0.11 -1.17 16 19 C -0.12 -0.96 5.31 -27.44 -0.15 -1.10 16 20 C -0.12 -0.91 5.61 -27.34 -0.15 -1.07 16 21 C -0.12 -0.90 5.26 -29.60 -0.16 -1.05 16 22 C -0.12 -1.03 5.26 -29.60 -0.16 -1.18 16 23 C -0.11 -1.11 5.13 -27.34 -0.14 -1.25 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.07 0.91 6.44 -51.93 -0.33 0.57 16 29 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 30 H 0.03 0.93 6.85 -51.93 -0.36 0.57 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.09 1.13 7.40 -51.93 -0.38 0.75 16 33 H 0.09 1.04 5.87 -51.93 -0.30 0.74 16 34 H 0.07 0.98 8.03 -51.92 -0.42 0.57 16 35 H 0.07 1.09 7.92 -51.93 -0.41 0.68 16 36 H 0.07 0.70 6.62 -51.93 -0.34 0.36 16 37 H 0.06 0.59 7.93 -51.93 -0.41 0.18 16 38 H 0.06 0.54 7.36 -51.93 -0.38 0.16 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.48 6.63 -51.93 -0.34 0.14 16 41 H 0.07 0.55 6.97 -51.93 -0.36 0.19 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.44 7.47 -51.93 -0.39 0.05 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.54 7.46 -51.93 -0.39 0.15 16 47 H 0.06 0.60 6.98 -51.93 -0.36 0.24 16 48 H 0.07 0.70 7.60 -51.93 -0.39 0.31 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -33.46 359.24 -9.12 -42.58 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.87 Total: -1.97 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.42 Total: -9.63 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.34 Total: -40.14 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.46 -9.12 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594243362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.181 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds