Wall clock time and date at job start Tue Mar 31 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 C 1.53003 * 109.47059 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.47212 * 180.02562 * 17 16 14 19 19 C 1.54241 * 108.89409 * 296.39034 * 18 17 16 20 20 C 1.50553 * 108.48425 * 159.17927 * 19 18 17 21 21 C 1.54069 * 112.41393 * 94.26751 * 20 19 18 22 22 C 1.54063 * 112.81877 * 318.27936 * 21 20 19 23 23 C 1.50471 * 112.49527 * 318.28707 * 22 21 20 24 24 C 1.45545 * 108.89522 * 173.60190 * 18 17 16 25 25 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 26 26 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 27 27 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 28 28 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 29 29 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 30 30 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 31 31 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 32 32 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 33 33 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 34 34 H 1.09000 * 109.46813 * 299.99811 * 17 16 14 35 35 H 1.08998 * 109.47365 * 59.99615 * 17 16 14 36 36 H 1.08997 * 108.87709 * 54.99926 * 18 17 16 37 37 H 1.08996 * 109.63202 * 278.97808 * 19 18 17 38 38 H 1.08995 * 109.62860 * 39.55786 * 19 18 17 39 39 H 1.09006 * 108.92655 * 333.51283 * 20 19 18 40 40 H 1.09000 * 108.84212 * 214.96581 * 20 19 18 41 41 H 1.09002 * 108.81152 * 197.42019 * 21 20 19 42 42 H 1.09006 * 108.72630 * 79.08306 * 21 20 19 43 43 H 1.08996 * 108.87872 * 197.50676 * 22 21 20 44 44 H 1.08999 * 108.87353 * 79.05978 * 22 21 20 45 45 H 1.08998 * 109.62915 * 334.43967 * 23 22 21 46 46 H 1.09000 * 109.62711 * 213.85922 * 23 22 21 47 47 H 1.08998 * 108.89736 * 303.43861 * 24 18 17 48 48 H 1.09007 * 108.89579 * 62.03175 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 6 4.1447 0.2159 4.1471 18 6 4.6547 -0.5053 5.3963 19 6 3.4481 -0.9043 6.2703 20 6 3.8723 -2.0186 7.1896 21 6 4.3319 -1.5016 8.5662 22 6 5.2030 -0.2347 8.4683 23 6 6.1984 -0.3060 7.3421 24 6 5.5819 0.3687 6.0997 25 1 -0.3633 0.6023 0.8326 26 1 -0.3634 0.4199 -0.9379 27 1 -0.3633 -1.0222 0.1053 28 1 2.2553 -1.8357 -3.4698 29 1 2.4157 -2.7377 0.9717 30 1 1.6237 -2.2852 2.5002 31 1 0.6904 -2.3002 0.9847 32 1 2.4470 -1.0880 3.9073 33 1 3.9004 -1.6025 3.0178 34 1 4.9927 0.5584 3.5541 35 1 3.5391 1.0724 4.4434 36 1 5.1835 -1.4082 5.0910 37 1 3.1221 -0.0464 6.8583 38 1 2.6322 -1.2467 5.6337 39 1 4.6933 -2.5659 6.7264 40 1 3.0316 -2.6979 7.3307 41 1 4.9051 -2.2848 9.0624 42 1 3.4509 -1.2769 9.1676 43 1 5.7412 -0.1033 9.4069 44 1 4.5548 0.6276 8.3119 45 1 6.4240 -1.3487 7.1184 46 1 7.1117 0.2162 7.6271 47 1 6.3836 0.6541 5.4186 48 1 5.0504 1.2668 6.4147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594280905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:52 Heat of formation + Delta-G solvation = -71.289986 kcal Electronic energy + Delta-G solvation = -22993.463275 eV Core-core repulsion = 19853.963705 eV Total energy + Delta-G solvation = -3139.499570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.75617 -38.86309 -35.57005 -34.43527 -32.82116 -32.35424 -30.84806 -29.53111 -26.26140 -25.76982 -24.81802 -24.58386 -22.57246 -20.58064 -20.21386 -19.42615 -18.17475 -17.49694 -16.53677 -15.81848 -15.61257 -15.21089 -14.76788 -14.68471 -14.10030 -13.70777 -13.48590 -13.18832 -13.05479 -12.79797 -12.62984 -12.38841 -12.31294 -12.15977 -11.99634 -11.72159 -11.61952 -11.35112 -11.29185 -11.01205 -10.81882 -10.59778 -10.53905 -10.47597 -10.46302 -10.30180 -10.13210 -9.94335 -9.73689 -9.09858 -8.95144 -8.30883 -7.72228 -6.47529 -4.12011 3.34497 3.38892 3.49668 3.62414 3.88572 4.40930 4.46813 4.51250 4.63177 4.90154 4.93093 4.99021 5.09413 5.12774 5.21477 5.26774 5.32089 5.37809 5.44933 5.58158 5.59715 5.65975 5.80045 5.82558 5.88211 5.94364 5.97324 5.98735 5.99851 6.06749 6.08117 6.17934 6.20842 6.24313 6.29961 6.39825 6.43109 6.44660 6.51667 6.62822 6.98339 7.19057 7.48647 7.88438 8.31524 8.39878 8.80783 9.01168 9.56507 10.89918 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034428 B = 0.003338 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.094981 B = 8386.133056 C = 8662.856138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.233 3.767 3 H 0.054 0.946 4 C -0.609 4.609 5 H 0.059 0.941 6 C 0.035 3.965 7 N -0.903 5.903 8 Si 1.041 2.959 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.279 1.279 12 N -0.591 5.591 13 C 0.090 3.910 14 C 0.501 3.499 15 O -0.557 6.557 16 C -0.139 4.139 17 C -0.100 4.100 18 C -0.085 4.085 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.113 4.113 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -2.524 23.009 23.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 H 0.072 0.928 4 C -0.647 4.647 5 H 0.078 0.922 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.869 3.131 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.205 1.205 12 N -0.322 5.322 13 C -0.054 4.054 14 C 0.289 3.711 15 O -0.437 6.437 16 C -0.179 4.179 17 C -0.138 4.138 18 C -0.104 4.104 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.151 4.151 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.289 -0.783 21.765 22.026 hybrid contribution 0.461 -1.493 1.028 1.870 sum 3.750 -2.276 22.793 23.211 Atomic orbital electron populations 1.22516 0.98838 1.00234 1.00335 1.19165 0.90298 0.94752 0.82727 0.92817 1.22181 1.40986 1.10437 0.91126 0.92246 1.25687 0.94580 1.04932 0.91866 1.70875 1.41520 1.09985 1.31294 0.84105 0.77459 0.75455 0.76079 1.20982 1.19966 1.20475 1.47979 1.49346 1.11687 1.23144 1.21540 1.01529 0.82986 0.99379 1.20576 0.78856 0.87147 0.84527 1.90624 1.58438 1.17384 1.77207 1.21770 1.00919 0.99868 0.95314 1.21459 0.99840 0.97737 0.94765 1.20135 0.95967 0.99093 0.95162 1.21509 0.97708 0.98654 0.97536 1.21357 1.00720 0.98155 0.95380 1.21909 0.99079 0.97292 0.97100 1.21343 0.97683 0.98237 0.98373 1.21325 0.97828 1.01121 0.95176 1.20534 0.98737 0.98870 0.96938 0.95558 0.91635 0.93423 0.92287 0.93298 0.92701 0.91018 0.89391 0.89643 0.91315 0.91388 0.91508 0.91711 0.91458 0.92087 0.92527 0.92635 0.92568 0.92754 0.92049 0.91715 0.92220 0.92161 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 2 C 0.23 5.76 2.22 -69.08 -0.15 5.61 16 3 H 0.05 1.46 5.56 -51.93 -0.29 1.17 16 4 C -0.61 -17.12 8.68 -34.44 -0.30 -17.42 16 5 H 0.06 1.78 7.75 -52.48 -0.41 1.37 16 6 C 0.04 1.01 5.30 -17.82 -0.09 0.92 16 7 N -0.90 -27.57 13.70 55.43 0.76 -26.81 16 8 Si 1.04 25.79 26.29 -169.99 -4.47 21.32 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.27 -6.21 5.74 56.52 0.32 -5.88 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 N -0.59 -12.50 2.75 -175.26 -0.48 -12.99 16 13 C 0.09 1.51 9.43 59.85 0.56 2.07 16 14 C 0.50 10.16 7.67 -10.99 -0.08 10.08 16 15 O -0.56 -13.43 15.31 5.56 0.09 -13.34 16 16 C -0.14 -1.98 4.03 -27.88 -0.11 -2.09 16 17 C -0.10 -1.33 3.89 -26.73 -0.10 -1.43 16 18 C -0.09 -0.86 1.71 -93.49 -0.16 -1.02 16 19 C -0.12 -1.07 4.91 -27.31 -0.13 -1.21 16 20 C -0.12 -0.96 5.32 -27.40 -0.15 -1.10 16 21 C -0.12 -0.87 5.85 -25.62 -0.15 -1.02 16 22 C -0.12 -0.91 5.31 -27.44 -0.15 -1.06 16 23 C -0.12 -0.95 5.61 -27.34 -0.15 -1.10 16 24 C -0.11 -1.07 4.44 -29.60 -0.13 -1.21 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.50 4.85 -51.93 -0.25 1.25 16 27 H 0.05 0.98 6.45 -51.93 -0.33 0.65 16 28 H 0.27 8.09 8.73 -40.82 -0.36 7.74 16 29 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.05 0.70 6.44 -51.93 -0.33 0.37 16 31 H 0.07 1.22 6.33 -51.93 -0.33 0.89 16 32 H 0.09 1.06 5.40 -51.93 -0.28 0.78 16 33 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 34 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.07 0.67 7.46 -51.93 -0.39 0.28 16 37 H 0.06 0.61 6.97 -51.93 -0.36 0.24 16 38 H 0.07 0.63 5.82 -51.93 -0.30 0.33 16 39 H 0.06 0.50 6.63 -51.93 -0.34 0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.50 6.62 -51.93 -0.34 0.15 16 45 H 0.06 0.53 6.98 -51.93 -0.36 0.17 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.59 8.04 -51.93 -0.42 0.18 16 48 H 0.06 0.59 7.46 -51.92 -0.39 0.21 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -32.09 349.96 -8.38 -40.47 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.58 Total: -0.71 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -0.97 Total: -13.21 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.28 Total: -39.80 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -4.47 Total: 21.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.09 -8.38 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594280905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.818 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds