Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47364 * 180.02562 * 17 16 14 19 19 C 1.54244 * 108.89477 * 296.40010 * 18 17 16 20 20 C 1.50551 * 108.48413 * 159.17563 * 19 18 17 21 21 C 1.54067 * 112.41569 * 94.26847 * 20 19 18 22 22 C 1.54069 * 112.81185 * 318.27488 * 21 20 19 23 23 C 1.50471 * 112.49853 * 318.28447 * 22 21 20 24 24 C 1.45530 * 108.90051 * 173.60693 * 18 17 16 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 30 30 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 31 31 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 32 32 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 33 33 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 34 34 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 35 35 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 36 36 H 1.09004 * 108.87028 * 54.99487 * 18 17 16 37 37 H 1.09000 * 109.62479 * 278.97329 * 19 18 17 38 38 H 1.09001 * 109.62674 * 39.54806 * 19 18 17 39 39 H 1.08998 * 108.92405 * 333.50936 * 20 19 18 40 40 H 1.09005 * 108.83791 * 214.95924 * 20 19 18 41 41 H 1.09003 * 108.81561 * 197.41809 * 21 20 19 42 42 H 1.08993 * 108.72886 * 79.07859 * 21 20 19 43 43 H 1.09008 * 108.87217 * 197.50988 * 22 21 20 44 44 H 1.08993 * 108.87737 * 79.06688 * 22 21 20 45 45 H 1.08997 * 109.62987 * 334.44872 * 23 22 21 46 46 H 1.09000 * 109.62836 * 213.86448 * 23 22 21 47 47 H 1.09004 * 108.89772 * 303.44282 * 24 18 17 48 48 H 1.09003 * 108.89738 * 62.02898 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6562 -0.5054 -5.3955 19 6 5.5838 -1.6592 -4.9626 20 6 5.6676 -2.6530 -6.0904 21 6 6.8822 -2.4030 -7.0047 22 6 7.1092 -0.9082 -7.3010 23 6 5.8243 -0.1732 -7.5712 24 6 5.3335 0.4569 -6.2517 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1611 3.4845 29 1 0.7376 -2.1442 -1.9996 30 1 2.4629 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4711 32 1 3.9016 -1.6021 -3.0168 33 1 2.4483 -1.0887 -3.9070 34 1 3.5409 1.0721 -4.4431 35 1 4.9938 0.5582 -3.5525 36 1 3.8050 -0.9204 -5.9352 37 1 6.5770 -1.2677 -4.7428 38 1 5.1745 -2.1454 -4.0770 39 1 4.7578 -2.5881 -6.6871 40 1 5.7428 -3.6562 -5.6707 41 1 6.7271 -2.9285 -7.9469 42 1 7.7727 -2.8047 -6.5213 43 1 7.7582 -0.8160 -8.1720 44 1 7.6041 -0.4501 -6.4447 45 1 5.0749 -0.8710 -7.9446 46 1 5.9988 0.6103 -8.3086 47 1 4.6448 1.2695 -6.4833 48 1 6.1913 0.8638 -5.7160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594280906.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = -72.929261 kcal Electronic energy + Delta-G solvation = -22936.462515 eV Core-core repulsion = 19796.891861 eV Total energy + Delta-G solvation = -3139.570654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 5.25 seconds Orbital eigenvalues (eV) -39.66450 -38.71830 -35.38291 -34.35340 -32.82476 -32.30511 -30.53110 -29.01316 -26.08295 -25.63077 -25.18378 -24.64083 -22.52067 -20.65185 -20.17886 -19.38266 -18.11947 -16.62422 -16.24406 -15.74544 -15.42630 -15.15865 -14.66836 -14.60638 -14.29483 -13.83812 -13.37983 -13.11611 -12.96876 -12.59531 -12.36724 -12.29230 -12.23926 -11.90742 -11.84354 -11.51627 -11.35152 -11.06286 -10.96611 -10.83245 -10.77223 -10.67537 -10.54257 -10.49039 -10.41901 -10.24640 -10.22258 -10.12300 -10.06795 -9.15458 -8.81251 -8.39465 -7.52098 -6.04937 -4.12965 3.28765 3.33910 3.35274 3.50072 4.03275 4.40690 4.47003 4.57246 4.68288 4.95687 4.99923 5.05625 5.15135 5.18022 5.25781 5.31448 5.39520 5.47977 5.51892 5.63263 5.68443 5.73132 5.86906 5.89209 5.95935 6.00691 6.01695 6.04851 6.08091 6.11519 6.14300 6.23670 6.29966 6.36382 6.40623 6.49817 6.59105 6.78864 6.87417 7.10859 7.48658 7.58251 7.75235 8.05557 8.23979 8.60886 8.86676 9.15109 9.53604 11.00338 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.003290 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.001901 B = 8507.779358 C = 8795.252968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.596 5.596 13 C 0.085 3.915 14 C 0.500 3.500 15 O -0.556 6.556 16 C -0.139 4.139 17 C -0.100 4.100 18 C -0.085 4.085 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.113 4.113 25 H 0.029 0.971 26 H 0.092 0.908 27 H 0.010 0.990 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.526 -7.112 -18.672 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.327 5.327 13 C -0.059 4.059 14 C 0.287 3.713 15 O -0.436 6.436 16 C -0.179 4.179 17 C -0.138 4.138 18 C -0.103 4.103 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.151 4.151 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.573 -6.383 -18.395 20.891 hybrid contribution 0.217 -0.659 0.929 1.160 sum 7.790 -7.042 -17.466 20.379 Atomic orbital electron populations 1.22077 0.98331 0.99305 1.00700 1.18897 0.90789 0.94533 0.80095 0.92011 1.21301 1.31803 1.12987 0.90402 0.92349 1.24901 0.94967 0.94988 0.98949 1.69876 1.36352 1.22593 1.23812 0.86558 0.79242 0.79561 0.82028 1.21172 1.20243 1.20250 1.48254 1.49230 1.11579 1.23673 1.21573 0.98687 0.83464 1.02193 1.20536 0.79053 0.87199 0.84479 1.90633 1.58498 1.17354 1.77069 1.21773 1.00645 0.99885 0.95638 1.21453 0.99684 0.97598 0.95056 1.20130 0.98101 0.95990 0.96093 1.21517 1.00028 0.96000 0.97945 1.21353 0.98304 0.98987 0.96914 1.21909 0.98260 0.96070 0.99145 1.21346 0.97702 0.95430 1.01184 1.21323 0.97507 0.99290 0.97293 1.20533 1.00715 0.98312 0.95514 0.95234 0.88922 0.97106 0.92655 0.94060 0.92835 0.90273 0.89390 0.89918 0.91457 0.91324 0.91600 0.91695 0.91345 0.92139 0.92528 0.92680 0.92558 0.92792 0.92011 0.91751 0.92267 0.92221 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.97 37.16 0.33 -3.23 16 2 C 0.26 6.72 2.64 -69.09 -0.18 6.54 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.44 7.99 -34.44 -0.28 -14.71 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.60 -12.95 2.75 -175.26 -0.48 -13.44 16 13 C 0.08 1.44 9.24 59.85 0.55 1.99 16 14 C 0.50 10.48 7.67 -10.99 -0.08 10.39 16 15 O -0.56 -13.98 15.31 5.56 0.09 -13.89 16 16 C -0.14 -2.05 4.03 -27.89 -0.11 -2.16 16 17 C -0.10 -1.37 3.89 -26.73 -0.10 -1.48 16 18 C -0.08 -0.89 1.71 -93.49 -0.16 -1.04 16 19 C -0.12 -1.16 4.91 -27.30 -0.13 -1.29 16 20 C -0.12 -1.00 5.32 -27.40 -0.15 -1.15 16 21 C -0.12 -0.91 5.85 -25.62 -0.15 -1.06 16 22 C -0.12 -0.96 5.31 -27.44 -0.15 -1.10 16 23 C -0.12 -0.97 5.61 -27.34 -0.15 -1.12 16 24 C -0.11 -1.11 4.44 -29.60 -0.13 -1.24 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.73 6.44 -51.92 -0.33 0.40 16 31 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 32 H 0.09 1.16 5.40 -51.93 -0.28 0.88 16 33 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 34 H 0.07 1.00 8.01 -51.93 -0.42 0.58 16 35 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.07 0.66 7.46 -51.93 -0.39 0.28 16 37 H 0.06 0.66 6.97 -51.93 -0.36 0.30 16 38 H 0.07 0.70 5.82 -51.93 -0.30 0.40 16 39 H 0.06 0.51 6.63 -51.93 -0.34 0.16 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 44 H 0.06 0.53 6.62 -51.93 -0.34 0.19 16 45 H 0.06 0.53 6.98 -51.93 -0.36 0.17 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.59 8.04 -51.93 -0.42 0.18 16 48 H 0.06 0.63 7.46 -51.93 -0.39 0.24 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -30.80 355.46 -9.11 -39.92 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.69 Total: -0.28 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -0.99 Total: -9.00 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.15 Total: -38.30 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.80 -9.11 -39.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594280906.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.013 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.25 seconds