Wall clock time and date at job start Tue Mar 31 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47114 * 2 1 4 4 C 1.52996 * 109.47306 * 119.99632 * 2 1 3 5 5 C 1.50703 * 109.47238 * 183.57680 * 4 2 1 6 6 H 1.07993 * 119.99948 * 5.08198 * 5 4 2 7 7 C 1.37884 * 119.99772 * 185.08747 * 5 4 2 8 8 N 1.31513 * 119.99939 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99549 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47084 * 60.00033 * 9 7 5 11 11 H 1.48506 * 109.46753 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47103 * 299.99483 * 9 7 5 13 13 N 1.46900 * 109.47624 * 239.99918 * 2 1 3 14 14 C 1.46846 * 110.99810 * 308.74860 * 13 2 1 15 15 C 1.53032 * 109.52346 * 185.83844 * 14 13 2 16 16 C 1.53125 * 109.27996 * 300.81431 * 15 14 13 17 17 C 1.52991 * 109.52377 * 177.56018 * 16 15 14 18 18 H 1.09000 * 109.49261 * 300.03168 * 17 16 15 19 19 C 1.53096 * 109.48105 * 180.02562 * 17 16 15 20 20 C 1.53173 * 109.16605 * 182.40886 * 19 17 16 21 21 C 1.53174 * 109.11051 * 56.93507 * 20 19 17 22 22 C 1.53099 * 109.15928 * 303.15628 * 21 20 19 23 23 O 1.42903 * 109.48154 * 60.06136 * 17 16 15 24 24 C 1.53119 * 109.15709 * 57.65717 * 16 15 14 25 25 C 1.46855 * 110.99948 * 72.95252 * 13 2 1 26 26 H 1.08997 * 109.47384 * 300.00017 * 1 2 3 27 27 H 1.08997 * 109.46907 * 60.00139 * 1 2 3 28 28 H 1.08997 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47167 * 303.57365 * 4 2 1 30 30 H 1.08998 * 109.47128 * 63.57302 * 4 2 1 31 31 H 0.97000 * 119.99638 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46618 * 65.82032 * 14 13 2 33 33 H 1.09007 * 109.44903 * 305.84570 * 14 13 2 34 34 H 1.09000 * 109.50454 * 180.87848 * 15 14 13 35 35 H 1.09003 * 109.50548 * 60.75869 * 15 14 13 36 36 H 1.09000 * 109.51910 * 297.69445 * 16 15 14 37 37 H 1.09004 * 109.51722 * 62.50536 * 19 17 16 38 38 H 1.08998 * 109.52372 * 302.32139 * 19 17 16 39 39 H 1.09000 * 109.54399 * 176.84999 * 20 19 17 40 40 H 1.09007 * 109.54242 * 297.02757 * 20 19 17 41 41 H 1.09006 * 109.51957 * 62.97262 * 21 20 19 42 42 H 1.09001 * 109.52653 * 183.15782 * 21 20 19 43 43 H 1.09006 * 109.40657 * 297.48872 * 22 21 20 44 44 H 1.09004 * 109.49488 * 177.50649 * 22 21 20 45 45 H 1.09000 * 109.50740 * 62.28344 * 24 16 15 46 46 H 1.08992 * 109.50423 * 182.40745 * 24 16 15 47 47 H 1.08999 * 109.46305 * 294.17856 * 25 13 2 48 48 H 1.08998 * 109.45991 * 54.15829 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5444 -0.6448 1.2943 6 1 4.0780 -0.0643 0.5564 7 6 4.2396 -1.3163 2.2778 8 7 3.5897 -2.0229 3.1766 9 14 6.1044 -1.2222 2.3332 10 1 6.5239 0.1925 2.4995 11 1 6.6067 -2.0248 3.4773 12 1 6.6650 -1.7593 1.0672 13 7 2.0198 -0.6925 -1.1994 14 6 1.3862 -2.0095 -1.3422 15 6 2.0235 -2.7592 -2.5142 16 6 1.8403 -1.9425 -3.7964 17 6 2.5282 -2.6576 -4.9609 18 1 3.5917 -2.7626 -4.7460 19 6 2.3450 -1.8399 -6.2421 20 6 2.9841 -2.5913 -7.4140 21 6 2.3559 -3.9844 -7.5187 22 6 2.5368 -4.7185 -6.1875 23 8 1.9474 -3.9515 -5.1355 24 6 2.4664 -0.5584 -3.6043 25 6 1.8163 0.1276 -2.4005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6253 -0.2456 2.1380 30 1 1.7299 -1.7656 1.2179 31 1 4.0788 -2.4949 3.8686 32 1 0.3201 -1.8814 -1.5296 33 1 1.5276 -2.5817 -0.4251 34 1 1.5424 -3.7305 -2.6297 35 1 3.0870 -2.8999 -2.3212 36 1 0.7771 -1.8356 -4.0114 37 1 2.8263 -0.8687 -6.1263 38 1 1.2816 -1.6996 -6.4358 39 1 2.8086 -2.0416 -8.3387 40 1 4.0566 -2.6868 -7.2444 41 1 1.2926 -3.8888 -7.7391 42 1 2.8448 -4.5455 -8.3151 43 1 3.6003 -4.8509 -5.9884 44 1 2.0529 -5.6938 -6.2412 45 1 3.5369 -0.6644 -3.4283 46 1 2.3017 0.0428 -4.4984 47 1 0.7482 0.2457 -2.5830 48 1 2.2700 1.1075 -2.2523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595782897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:31 Heat of formation + Delta-G solvation = -71.099462 kcal Electronic energy + Delta-G solvation = -23577.168893 eV Core-core repulsion = 20437.677585 eV Total energy + Delta-G solvation = -3139.491308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90499 -38.47425 -35.15332 -33.76350 -32.64004 -31.17975 -30.42702 -28.85679 -27.22491 -25.32060 -24.29389 -23.13369 -22.47009 -21.70765 -20.34247 -19.69544 -18.52541 -16.30565 -16.20008 -16.09656 -15.29825 -14.81650 -14.73326 -14.47539 -14.18850 -14.03633 -13.55285 -13.40898 -13.13275 -12.78483 -12.72651 -12.39553 -12.05666 -11.73177 -11.63612 -11.43281 -11.36420 -11.30478 -11.17670 -10.86835 -10.79050 -10.62837 -10.51896 -10.34771 -10.20477 -10.14009 -9.84236 -9.72940 -9.39767 -9.07665 -8.89800 -8.19786 -7.33914 -5.82976 -3.80052 3.44227 3.47767 3.51431 3.71485 4.54274 4.60549 4.62702 4.66013 4.70444 4.82161 5.06123 5.10518 5.23468 5.27779 5.33475 5.51804 5.53946 5.55942 5.61799 5.67081 5.74336 5.78160 5.80393 5.83168 5.86170 5.94234 5.96477 6.01266 6.06914 6.11927 6.17738 6.22967 6.34362 6.35991 6.52184 6.54905 6.70508 6.79215 6.84732 7.08009 7.25772 7.62225 7.77373 8.02245 8.12768 8.19253 8.64773 9.24807 9.80797 11.29168 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.004300 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.490318 B = 6510.660736 C = 7163.268439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.066 0.934 4 C 0.031 3.969 5 C -0.486 4.486 6 H 0.058 0.942 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.508 5.508 14 C 0.058 3.942 15 C -0.105 4.105 16 C -0.076 4.076 17 C 0.097 3.903 18 H 0.058 0.942 19 C -0.151 4.151 20 C -0.123 4.123 21 C -0.156 4.156 22 C 0.060 3.940 23 O -0.375 6.375 24 C -0.108 4.108 25 C 0.056 3.944 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.013 0.987 30 H 0.022 0.978 31 H 0.257 0.743 32 H 0.022 0.978 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.022 0.978 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 -1.174 -20.371 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.525 4.525 6 H 0.076 0.924 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.232 5.232 14 C -0.070 4.070 15 C -0.143 4.143 16 C -0.095 4.095 17 C 0.039 3.961 18 H 0.076 0.924 19 C -0.189 4.189 20 C -0.161 4.161 21 C -0.194 4.194 22 C -0.017 4.017 23 O -0.294 6.294 24 C -0.146 4.146 25 C -0.073 4.073 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.040 0.960 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.750 -1.420 -20.043 20.440 hybrid contribution 0.387 0.186 -0.270 0.507 sum -3.363 -1.234 -20.314 20.627 Atomic orbital electron populations 1.22517 0.99870 1.01352 1.00451 1.21902 0.89975 0.98119 0.92148 0.91550 1.19178 0.96281 0.95545 0.89636 1.21105 0.91607 1.28805 1.10960 0.92376 1.24984 0.97878 0.95918 0.96049 1.69954 1.35165 1.33020 1.16469 0.86714 0.86606 0.77752 0.77187 1.20579 1.21707 1.20421 1.62044 1.57766 1.02230 1.01167 1.22072 0.94552 0.91303 0.99094 1.21551 1.02157 0.97798 0.92781 1.21178 0.99631 0.94850 0.93813 1.22176 0.96971 0.82859 0.94068 0.92389 1.22262 1.01816 0.99582 0.95209 1.21594 0.99983 0.95847 0.98650 1.22191 1.01869 0.96912 0.98403 1.22518 0.98019 0.94602 0.86519 1.87950 1.60760 1.27703 1.53010 1.21630 1.01201 0.94560 0.97172 1.22030 0.97385 0.96922 0.90957 0.92711 0.94322 0.92765 0.96836 0.95940 0.93341 0.95996 0.89649 0.91585 0.91200 0.91301 0.90560 0.91270 0.91753 0.91902 0.91241 0.91220 0.93406 0.89159 0.90923 0.92137 0.95975 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 8.40 37.16 0.31 -2.92 16 2 C 0.09 1.79 2.26 -67.72 -0.15 1.64 16 3 H 0.07 1.39 7.93 -51.92 -0.41 0.98 16 4 C 0.03 0.79 4.40 -27.88 -0.12 0.67 16 5 C -0.49 -13.75 8.80 -34.44 -0.30 -14.06 16 6 H 0.06 1.64 7.75 -52.49 -0.41 1.23 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.91 -27.56 13.29 55.43 0.74 -26.82 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.51 -9.78 4.26 -226.68 -0.97 -10.75 16 14 C 0.06 1.06 4.47 -3.84 -0.02 1.04 16 15 C -0.11 -1.70 5.20 -26.65 -0.14 -1.84 16 16 C -0.08 -1.04 2.05 -90.50 -0.19 -1.23 16 17 C 0.10 1.19 2.22 -26.69 -0.06 1.13 16 18 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 19 C -0.15 -1.52 5.00 -26.59 -0.13 -1.65 16 20 C -0.12 -1.07 6.02 -26.55 -0.16 -1.23 16 21 C -0.16 -1.32 6.14 -26.59 -0.16 -1.48 16 22 C 0.06 0.60 6.84 37.21 0.25 0.86 16 23 O -0.38 -4.91 9.79 -35.23 -0.34 -5.25 16 24 C -0.11 -1.46 4.96 -26.65 -0.13 -1.59 16 25 C 0.06 0.87 5.18 -3.83 -0.02 0.85 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.61 6.93 -51.93 -0.36 0.25 16 28 H 0.05 0.96 6.45 -51.93 -0.33 0.63 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.62 6.39 -51.93 -0.33 0.28 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.02 0.38 6.57 -51.93 -0.34 0.04 16 33 H 0.09 1.80 6.28 -51.93 -0.33 1.48 16 34 H 0.07 1.04 7.77 -51.93 -0.40 0.64 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.72 6.64 -51.93 -0.34 0.37 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.68 6.64 -51.93 -0.34 0.33 16 47 H 0.02 0.34 6.98 -51.93 -0.36 -0.03 16 48 H 0.07 1.06 7.98 -51.93 -0.41 0.65 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -30.27 354.06 -10.39 -40.66 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -9.01 Total: -2.01 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.12 Total: -18.44 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.23 Total: -37.57 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.34 Total: -5.25 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.27 -10.39 -40.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595782897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.437 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds