Wall clock time and date at job start Tue Mar 31 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47035 * 2 1 4 4 C 1.52997 * 109.47019 * 239.99471 * 2 1 3 5 5 C 1.50698 * 109.46864 * 175.00289 * 4 2 1 6 6 H 1.08004 * 120.00404 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99900 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99933 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47260 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46826 * 120.00065 * 9 7 5 12 12 H 1.48496 * 109.47315 * 240.00058 * 9 7 5 13 13 N 1.46895 * 109.46840 * 119.99496 * 2 1 3 14 14 C 1.46851 * 111.00352 * 58.95520 * 13 2 1 15 15 C 1.53032 * 109.52637 * 174.15961 * 14 13 2 16 16 C 1.53117 * 109.27915 * 59.18304 * 15 14 13 17 17 C 1.53120 * 109.15587 * 302.33940 * 16 15 14 18 18 H 1.08991 * 109.50882 * 297.67776 * 17 16 15 19 19 C 1.53006 * 109.50254 * 177.59657 * 17 16 15 20 20 H 1.09002 * 109.48254 * 185.08162 * 19 17 16 21 21 C 1.53098 * 109.47924 * 65.05733 * 19 17 16 22 22 C 1.53173 * 109.16229 * 182.39751 * 21 19 17 23 23 C 1.53171 * 109.03669 * 56.98045 * 22 21 19 24 24 C 1.53090 * 109.16805 * 303.01726 * 23 22 21 25 25 O 1.42901 * 109.48873 * 305.11007 * 19 17 16 26 26 C 1.46845 * 111.00023 * 294.70454 * 13 2 1 27 27 H 1.09007 * 109.47128 * 60.00293 * 1 2 3 28 28 H 1.08999 * 109.47454 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47637 * 300.00802 * 1 2 3 30 30 H 1.09001 * 109.47453 * 294.99976 * 4 2 1 31 31 H 1.08997 * 109.47327 * 55.00476 * 4 2 1 32 32 H 0.97006 * 119.99917 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.45945 * 54.13837 * 14 13 2 34 34 H 1.08998 * 109.46036 * 294.17665 * 14 13 2 35 35 H 1.08996 * 109.50222 * 299.23794 * 15 14 13 36 36 H 1.09001 * 109.50293 * 179.12259 * 15 14 13 37 37 H 1.09001 * 109.52349 * 182.44609 * 16 15 14 38 38 H 1.08990 * 109.57719 * 62.28106 * 16 15 14 39 39 H 1.08999 * 109.51953 * 302.30753 * 21 19 17 40 40 H 1.09009 * 109.51672 * 62.43170 * 21 19 17 41 41 H 1.08994 * 109.54460 * 176.85324 * 22 21 19 42 42 H 1.09005 * 109.54293 * 297.02794 * 22 21 19 43 43 H 1.09002 * 109.51983 * 62.92805 * 23 22 21 44 44 H 1.09002 * 109.52409 * 183.11428 * 23 22 21 45 45 H 1.09000 * 109.48489 * 177.58764 * 24 23 22 46 46 H 1.08992 * 109.47986 * 297.62818 * 24 23 22 47 47 H 1.08995 * 109.43206 * 65.80550 * 26 13 2 48 48 H 1.09007 * 109.49434 * 305.83798 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5418 -0.6151 -1.3126 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1938 -2.3576 8 7 3.5764 -1.8381 -3.2992 9 14 6.0920 -1.0614 -2.4366 10 1 6.5836 -0.2910 -1.2661 11 1 6.6862 -2.4223 -2.4179 12 1 6.4862 -0.3663 -3.6882 13 7 2.0196 -0.6924 1.1995 14 6 1.5284 -2.0755 1.2461 15 6 2.1724 -2.8075 2.4258 16 6 1.8222 -2.0778 3.7255 17 6 2.3017 -0.6266 3.6319 18 1 3.3861 -0.6078 3.5232 19 6 1.9027 0.1262 4.9028 20 1 2.1636 1.1794 4.7985 21 6 2.6459 -0.4675 6.1024 22 6 2.1964 0.2513 7.3782 23 6 0.6762 0.1231 7.5147 24 6 0.0091 0.6940 6.2606 25 8 0.4940 0.0023 5.1079 26 6 1.6548 0.0428 2.4172 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.7516 -1.7716 -1.2055 31 1 1.6054 -0.2619 -2.1369 32 1 4.0608 -2.2456 -4.0343 33 1 1.7875 -2.5844 0.3177 34 1 0.4453 -2.0723 1.3683 35 1 3.2546 -2.8231 2.2973 36 1 1.7958 -3.8294 2.4694 37 1 2.3145 -2.5706 4.5639 38 1 0.7428 -2.0958 3.8751 39 1 2.4170 -1.5301 6.1831 40 1 3.7195 -0.3352 5.9676 41 1 2.6798 -0.2038 8.2426 42 1 2.4710 1.3045 7.3194 43 1 0.4076 -0.9276 7.6240 44 1 0.3409 0.6788 8.3905 45 1 -1.0710 0.5666 6.3333 46 1 0.2452 1.7545 6.1741 47 1 0.5710 0.0366 2.5335 48 1 2.0057 1.0719 2.3398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595790482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:52 Heat of formation + Delta-G solvation = -69.874721 kcal Electronic energy + Delta-G solvation = -23794.590522 eV Core-core repulsion = 20655.152323 eV Total energy + Delta-G solvation = -3139.438199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.96784 -38.37646 -34.97909 -33.73607 -32.56126 -31.85606 -29.93657 -28.75948 -27.22330 -25.09213 -24.27790 -23.54227 -22.49681 -21.74367 -20.34999 -19.39860 -18.42596 -16.24037 -16.12878 -16.06445 -15.26969 -14.86393 -14.74033 -14.46294 -14.20539 -13.86504 -13.82326 -13.42633 -13.08782 -12.79070 -12.61174 -12.38308 -11.95773 -11.80776 -11.69243 -11.52703 -11.31785 -11.25519 -11.12343 -10.92192 -10.75535 -10.56648 -10.47183 -10.32621 -10.19091 -9.98614 -9.82401 -9.67318 -9.40399 -9.03406 -8.88026 -8.21163 -7.31130 -5.84445 -3.81731 3.40750 3.48141 3.53867 3.75623 4.44656 4.60227 4.61697 4.70393 4.75807 4.83068 5.05572 5.15346 5.22976 5.33390 5.37136 5.49090 5.52939 5.56701 5.62329 5.66511 5.75322 5.79247 5.85633 5.90182 5.92970 5.99093 6.00979 6.04202 6.10404 6.17250 6.23453 6.29259 6.36909 6.43119 6.55705 6.60033 6.74176 6.83929 6.91317 7.08232 7.24139 7.64052 7.79126 8.04766 8.13666 8.19657 8.64224 9.24806 9.79767 11.27646 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024696 B = 0.004196 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.525001 B = 6672.114366 C = 7124.740092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.511 5.511 14 C 0.056 3.944 15 C -0.117 4.117 16 C -0.107 4.107 17 C -0.074 4.074 18 H 0.088 0.912 19 C 0.097 3.903 20 H 0.055 0.945 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.155 4.155 24 C 0.060 3.940 25 O -0.371 6.371 26 C 0.062 3.938 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.256 0.744 33 H 0.089 0.911 34 H 0.021 0.979 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.034 0.966 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.949 3.066 20.634 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.086 0.914 4 C -0.009 4.009 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.235 5.235 14 C -0.072 4.072 15 C -0.155 4.155 16 C -0.144 4.144 17 C -0.093 4.093 18 H 0.106 0.894 19 C 0.039 3.961 20 H 0.073 0.927 21 C -0.189 4.189 22 C -0.160 4.160 23 C -0.193 4.193 24 C -0.017 4.017 25 O -0.290 6.290 26 C -0.067 4.067 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.515 2.854 20.318 21.245 hybrid contribution 0.313 0.234 0.172 0.426 sum -5.202 3.088 20.489 21.364 Atomic orbital electron populations 1.22517 0.99927 1.01243 1.00568 1.21879 0.89968 0.98302 0.91878 0.91441 1.19240 0.96354 0.95404 0.89912 1.21228 0.91831 1.32642 1.06851 0.92078 1.25006 0.97930 0.95975 0.96031 1.69979 1.35041 1.37135 1.12425 0.86591 0.86587 0.77517 0.77613 1.19798 1.21376 1.21467 1.61993 1.59290 1.01359 1.00819 1.22080 0.95557 0.90213 0.99336 1.21594 1.01820 0.97795 0.94256 1.21535 1.01166 0.94442 0.97288 1.21243 1.00911 0.95190 0.91938 0.89350 1.22144 0.81025 0.98505 0.94438 0.92674 1.22245 1.00621 1.01231 0.94770 1.21586 0.95599 1.00725 0.98084 1.22181 0.96191 1.02321 0.98628 1.22511 0.98643 0.95283 0.85255 1.87983 1.22555 1.73713 1.44778 1.22011 0.97642 0.97030 0.89971 0.92766 0.93005 0.94043 0.96147 0.96466 0.93445 0.89321 0.96071 0.91192 0.92427 0.92720 0.91781 0.90705 0.90883 0.91741 0.92017 0.91159 0.91316 0.89261 0.93549 0.94766 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.34 8.50 37.16 0.32 -3.03 16 2 C 0.09 1.84 2.29 -67.72 -0.16 1.69 16 3 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 4 C 0.03 0.72 4.27 -27.89 -0.12 0.60 16 5 C -0.49 -13.76 8.84 -34.44 -0.30 -14.06 16 6 H 0.06 1.73 7.74 -52.48 -0.41 1.33 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.51 -9.98 4.35 -226.70 -0.99 -10.97 16 14 C 0.06 1.04 4.64 -3.83 -0.02 1.03 16 15 C -0.12 -1.85 6.09 -26.65 -0.16 -2.01 16 16 C -0.11 -1.49 4.82 -26.61 -0.13 -1.62 16 17 C -0.07 -1.04 2.19 -90.53 -0.20 -1.24 16 18 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 19 C 0.10 1.16 2.33 -26.68 -0.06 1.09 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 C -0.15 -1.51 5.23 -26.59 -0.14 -1.65 16 22 C -0.12 -1.03 6.03 -26.55 -0.16 -1.19 16 23 C -0.16 -1.27 6.14 -26.60 -0.16 -1.44 16 24 C 0.06 0.57 6.84 37.20 0.25 0.83 16 25 O -0.37 -4.68 9.01 -35.23 -0.32 -4.99 16 26 C 0.06 1.02 4.22 -3.83 -0.02 1.00 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.94 6.52 -51.93 -0.34 0.61 16 29 H 0.04 0.69 6.66 -51.93 -0.35 0.34 16 30 H 0.02 0.56 6.06 -51.93 -0.31 0.24 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.09 1.91 5.94 -51.93 -0.31 1.60 16 34 H 0.02 0.38 6.62 -51.93 -0.34 0.04 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.68 6.65 -51.93 -0.35 0.34 16 38 H 0.06 0.94 7.48 -51.93 -0.39 0.55 16 39 H 0.07 0.78 6.53 -51.93 -0.34 0.44 16 40 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.03 0.58 6.39 -51.93 -0.33 0.25 16 48 H 0.06 1.02 8.07 -51.92 -0.42 0.60 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -30.12 352.27 -10.36 -40.48 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.93 Total: -1.63 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -1.15 Total: -18.67 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.25 Total: -37.71 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.32 Total: -4.99 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.12 -10.36 -40.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595790482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.390 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds