Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46803 * 240.00181 * 2 1 3 5 5 C 1.50697 * 109.47227 * 175.54559 * 4 2 1 6 6 H 1.08003 * 119.99542 * 4.87563 * 5 4 2 7 7 C 1.37870 * 120.00407 * 184.87108 * 5 4 2 8 8 N 1.31509 * 120.00104 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00290 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47265 * 59.99573 * 9 7 5 11 11 H 1.48503 * 109.47596 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47009 * 299.99694 * 9 7 5 13 13 N 1.46891 * 109.47147 * 120.00612 * 2 1 3 14 14 C 1.46853 * 111.00495 * 58.42168 * 13 2 1 15 15 C 1.53034 * 109.52558 * 174.15743 * 14 13 2 16 16 C 1.53118 * 109.27729 * 59.18362 * 15 14 13 17 17 C 1.53124 * 109.16068 * 302.34650 * 16 15 14 18 18 H 1.09005 * 109.49740 * 297.66931 * 17 16 15 19 19 C 1.53002 * 109.50436 * 177.59339 * 17 16 15 20 20 H 1.08994 * 109.48292 * 299.99960 * 19 17 16 21 21 C 1.53095 * 109.47812 * 60.02033 * 19 17 16 22 22 C 1.53181 * 109.16091 * 177.58016 * 21 19 17 23 23 C 1.53179 * 109.04502 * 303.03574 * 22 21 19 24 24 C 1.53092 * 109.16521 * 56.97410 * 23 22 21 25 25 O 1.42902 * 109.48119 * 179.97438 * 19 17 16 26 26 C 1.46853 * 111.00172 * 294.21374 * 13 2 1 27 27 H 1.09003 * 109.47084 * 299.99857 * 1 2 3 28 28 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47415 * 59.99414 * 1 2 3 30 30 H 1.09000 * 109.47535 * 295.55009 * 4 2 1 31 31 H 1.09008 * 109.47149 * 55.55392 * 4 2 1 32 32 H 0.97004 * 120.00841 * 179.97438 * 8 7 5 33 33 H 1.08993 * 109.46213 * 294.17833 * 14 13 2 34 34 H 1.09001 * 109.45423 * 54.14515 * 14 13 2 35 35 H 1.08995 * 109.50144 * 179.12102 * 15 14 13 36 36 H 1.08997 * 109.50454 * 299.24372 * 15 14 13 37 37 H 1.09005 * 109.52562 * 62.24444 * 16 15 14 38 38 H 1.08998 * 109.52767 * 182.37384 * 16 15 14 39 39 H 1.09000 * 109.52564 * 297.49362 * 21 19 17 40 40 H 1.09002 * 109.52256 * 57.68626 * 21 19 17 41 41 H 1.09001 * 109.54168 * 183.16598 * 22 21 19 42 42 H 1.09000 * 109.60683 * 62.94564 * 22 21 19 43 43 H 1.08998 * 109.52292 * 297.06712 * 23 22 21 44 44 H 1.08995 * 109.57411 * 176.90933 * 23 22 21 45 45 H 1.08990 * 109.48266 * 182.40613 * 24 23 22 46 46 H 1.09001 * 109.48640 * 62.37661 * 24 23 22 47 47 H 1.09002 * 109.45531 * 305.85822 * 26 13 2 48 48 H 1.09003 * 109.45930 * 65.82279 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5428 -0.6264 -1.3058 6 1 4.0863 -0.1734 -0.4898 7 6 4.2240 -1.1181 -2.3990 8 7 3.5623 -1.6703 -3.3923 9 14 6.0871 -1.0012 -2.4687 10 1 6.6726 -1.7380 -1.3199 11 1 6.5734 -1.5968 -3.7391 12 1 6.4964 0.4247 -2.4026 13 7 2.0196 -0.6926 1.1993 14 6 1.5182 -2.0718 1.2522 15 6 2.1620 -2.8052 2.4311 16 6 1.8232 -2.0691 3.7302 17 6 2.3130 -0.6217 3.6302 18 1 3.3971 -0.6115 3.5167 19 6 1.9252 0.1377 4.9006 20 1 0.8412 0.1285 5.0131 21 6 2.5703 -0.5356 6.1148 22 6 2.2273 0.2650 7.3749 23 6 2.6994 1.7107 7.1925 24 6 2.0493 2.2972 5.9367 25 8 2.3831 1.4882 4.8070 26 6 1.6649 0.0483 2.4166 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 1.7432 -1.7693 -1.2104 31 1 1.6129 -0.2554 -2.1375 32 1 4.0415 -2.0159 -4.1617 33 1 0.4358 -2.0601 1.3791 34 1 1.7695 -2.5853 0.3241 35 1 1.7778 -3.8241 2.4794 36 1 3.2435 -2.8293 2.2979 37 1 0.7440 -2.0785 3.8835 38 1 2.3144 -2.5638 4.5681 39 1 2.1884 -1.5517 6.2136 40 1 3.6521 -0.5631 5.9842 41 1 2.7295 -0.1768 8.2356 42 1 1.1492 0.2510 7.5350 43 1 3.7838 1.7288 7.0836 44 1 2.4108 2.3016 8.0618 45 1 2.4147 3.3116 5.7781 46 1 0.9667 2.3163 6.0628 47 1 2.0227 1.0746 2.3342 48 1 0.5817 0.0501 2.5380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595790484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = -70.160179 kcal Electronic energy + Delta-G solvation = -23710.064551 eV Core-core repulsion = 20570.613973 eV Total energy + Delta-G solvation = -3139.450578 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92786 -38.44780 -35.09906 -33.74890 -32.56753 -31.84192 -29.93728 -28.82271 -27.22519 -24.95824 -24.45878 -23.45555 -22.36203 -21.77933 -20.36930 -19.59915 -18.45863 -16.28706 -16.19572 -16.04347 -15.34413 -14.87856 -14.66668 -14.46007 -14.18085 -13.94438 -13.69547 -13.50597 -13.09521 -12.81636 -12.64013 -12.42833 -12.03681 -11.76972 -11.70205 -11.53366 -11.33951 -11.26915 -11.13264 -10.86069 -10.72318 -10.59314 -10.48639 -10.33338 -10.27897 -10.10990 -9.82308 -9.69378 -9.40537 -9.04220 -8.89504 -8.19332 -7.33535 -5.82961 -3.80328 3.45713 3.48717 3.53275 3.71879 4.43107 4.61839 4.62781 4.70449 4.75608 4.87613 5.05822 5.13425 5.20921 5.23323 5.34224 5.43263 5.52773 5.53824 5.60837 5.65807 5.72814 5.76302 5.84296 5.88171 5.90371 5.94625 5.96518 6.01075 6.05186 6.12516 6.15737 6.21355 6.27267 6.44275 6.54210 6.56583 6.70008 6.77923 6.86747 7.07387 7.27174 7.64500 7.79077 8.04582 8.13101 8.20364 8.66201 9.26804 9.81411 11.29084 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.004305 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.904845 B = 6501.869161 C = 6809.601994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.511 5.511 14 C 0.054 3.946 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.075 4.075 18 H 0.086 0.914 19 C 0.099 3.901 20 H 0.052 0.948 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.157 4.157 24 C 0.061 3.939 25 O -0.372 6.372 26 C 0.065 3.935 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.016 0.984 31 H 0.021 0.979 32 H 0.257 0.743 33 H 0.020 0.980 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.075 0.925 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 2.713 20.737 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.088 0.912 4 C -0.008 4.008 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.234 5.234 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.094 4.094 18 H 0.104 0.896 19 C 0.040 3.960 20 H 0.070 0.930 21 C -0.188 4.188 22 C -0.160 4.160 23 C -0.194 4.194 24 C -0.016 4.016 25 O -0.291 6.291 26 C -0.063 4.063 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -5.186 2.679 20.367 21.187 hybrid contribution -0.036 0.001 0.257 0.260 sum -5.223 2.680 20.624 21.443 Atomic orbital electron populations 1.22518 1.00021 1.01127 1.00571 1.21897 0.89873 0.98487 0.91795 0.91234 1.19225 0.96403 0.95107 0.90045 1.21180 0.91770 1.36970 1.02844 0.91988 1.25003 0.97919 0.96010 0.95954 1.69955 1.35228 1.41247 1.08270 0.86702 0.86511 0.78148 0.76837 1.20401 1.21742 1.20504 1.61995 1.59200 1.01229 1.00947 1.22102 0.95344 0.90561 0.99382 1.21563 1.02215 0.97669 0.93812 1.21621 1.00223 0.94716 0.98263 1.21172 1.02286 0.93666 0.92270 0.89554 1.22134 0.96813 0.82143 0.94873 0.92988 1.22254 1.02204 0.99646 0.94732 1.21591 1.01002 0.95389 0.98010 1.22193 1.01831 0.96757 0.98656 1.22520 0.98397 0.94790 0.85940 1.88003 1.79296 1.21285 1.40498 1.21993 0.96304 0.98126 0.89905 0.94184 0.93056 0.92672 0.96590 0.96110 0.93342 0.96174 0.89234 0.92189 0.90864 0.92721 0.92107 0.90689 0.90892 0.91705 0.92087 0.91035 0.91266 0.89072 0.93607 0.90677 0.96178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 8.50 37.16 0.32 -2.98 16 2 C 0.09 1.85 2.30 -67.72 -0.16 1.69 16 3 H 0.07 1.52 8.07 -51.93 -0.42 1.11 16 4 C 0.03 0.75 4.27 -27.88 -0.12 0.63 16 5 C -0.49 -13.92 8.83 -34.44 -0.30 -14.23 16 6 H 0.06 1.78 7.73 -52.48 -0.41 1.37 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 8 N -0.91 -27.61 13.29 55.43 0.74 -26.87 16 9 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 N -0.51 -9.97 4.32 -226.70 -0.98 -10.95 16 14 C 0.05 0.98 4.63 -3.83 -0.02 0.96 16 15 C -0.11 -1.73 6.09 -26.65 -0.16 -1.90 16 16 C -0.11 -1.42 4.86 -26.61 -0.13 -1.55 16 17 C -0.08 -1.07 2.15 -90.54 -0.19 -1.26 16 18 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 19 C 0.10 1.20 2.23 -26.68 -0.06 1.14 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 21 C -0.15 -1.53 4.99 -26.59 -0.13 -1.66 16 22 C -0.12 -1.05 6.03 -26.55 -0.16 -1.21 16 23 C -0.16 -1.34 6.14 -26.59 -0.16 -1.51 16 24 C 0.06 0.61 6.84 37.20 0.25 0.86 16 25 O -0.37 -5.01 9.76 -35.23 -0.34 -5.35 16 26 C 0.07 1.08 4.17 -3.83 -0.02 1.07 16 27 H 0.04 0.65 6.67 -51.93 -0.35 0.30 16 28 H 0.05 0.91 6.51 -51.93 -0.34 0.57 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.02 0.43 6.10 -51.93 -0.32 0.11 16 31 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.02 0.35 6.61 -51.93 -0.34 0.00 16 34 H 0.09 1.88 5.97 -51.93 -0.31 1.57 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.67 6.64 -51.93 -0.34 0.33 16 39 H 0.07 0.69 6.63 -51.93 -0.34 0.34 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 1.34 7.64 -51.93 -0.40 0.94 16 48 H 0.02 0.33 6.75 -51.93 -0.35 -0.02 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -30.39 353.31 -10.39 -40.79 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.97 Total: -1.77 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.14 Total: -18.57 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.24 Total: -37.83 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.34 Total: -5.35 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.39 -10.39 -40.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595790484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.375 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds