Wall clock time and date at job start Tue Mar 31 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47394 * 2 1 4 4 C 1.52999 * 109.47099 * 239.99822 * 2 1 3 5 5 C 1.50697 * 109.47102 * 176.83857 * 4 2 1 6 6 H 1.08002 * 120.00266 * 354.94925 * 5 4 2 7 7 C 1.37882 * 120.00087 * 174.94349 * 5 4 2 8 8 N 1.31516 * 119.99917 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99671 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46927 * 269.99364 * 9 7 5 11 11 H 1.48496 * 109.47257 * 30.00184 * 9 7 5 12 12 H 1.48504 * 109.46841 * 150.00115 * 9 7 5 13 13 N 1.46904 * 109.47016 * 119.99615 * 2 1 3 14 14 C 1.46839 * 111.00335 * 294.44924 * 13 2 1 15 15 C 1.53040 * 109.52601 * 185.83920 * 14 13 2 16 16 C 1.53115 * 109.27503 * 300.82049 * 15 14 13 17 17 C 1.53115 * 109.16435 * 57.65424 * 16 15 14 18 18 H 1.09004 * 109.53484 * 62.30132 * 17 16 15 19 19 C 1.52993 * 109.50679 * 182.40074 * 17 16 15 20 20 H 1.09000 * 109.48580 * 179.82879 * 19 17 16 21 21 C 1.53098 * 109.48194 * 299.86276 * 19 17 16 22 22 C 1.53179 * 109.16353 * 177.59170 * 21 19 17 23 23 C 1.53181 * 109.03245 * 303.01620 * 22 21 19 24 24 C 1.53091 * 109.16454 * 56.98517 * 23 22 21 25 25 O 1.42900 * 109.47924 * 59.80172 * 19 17 16 26 26 C 1.46850 * 110.99669 * 58.66115 * 13 2 1 27 27 H 1.08999 * 109.47713 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47236 * 300.00158 * 1 2 3 29 29 H 1.08999 * 109.47501 * 60.00184 * 1 2 3 30 30 H 1.08993 * 109.47709 * 56.83533 * 4 2 1 31 31 H 1.09004 * 109.47004 * 296.83706 * 4 2 1 32 32 H 0.96999 * 119.99621 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46069 * 305.85860 * 14 13 2 34 34 H 1.09001 * 109.46410 * 65.81860 * 14 13 2 35 35 H 1.08998 * 109.49948 * 180.87823 * 15 14 13 36 36 H 1.08995 * 109.53141 * 60.78010 * 15 14 13 37 37 H 1.08994 * 109.52361 * 297.74578 * 16 15 14 38 38 H 1.09003 * 109.51682 * 177.56067 * 16 15 14 39 39 H 1.08999 * 109.51687 * 297.49270 * 21 19 17 40 40 H 1.08999 * 109.51943 * 57.68558 * 21 19 17 41 41 H 1.08998 * 109.54041 * 183.15220 * 22 21 19 42 42 H 1.08998 * 109.54458 * 62.88492 * 22 21 19 43 43 H 1.09001 * 109.52568 * 297.07408 * 23 22 21 44 44 H 1.08997 * 109.52081 * 176.89009 * 23 22 21 45 45 H 1.08996 * 109.48102 * 182.40883 * 24 23 22 46 46 H 1.09000 * 109.49121 * 62.37471 * 24 23 22 47 47 H 1.09002 * 109.45887 * 294.16981 * 26 13 2 48 48 H 1.08998 * 109.46653 * 54.14326 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5449 -0.6538 -1.2890 6 1 4.0795 -0.0785 -0.5476 7 6 4.2394 -1.3265 -2.2720 8 7 5.5527 -1.2672 -2.3070 9 14 3.3147 -2.3210 -3.5547 10 1 3.1418 -3.7142 -3.0707 11 1 1.9821 -1.7093 -3.7892 12 1 4.0855 -2.3302 -4.8240 13 7 2.0196 -0.6924 1.1995 14 6 1.6601 0.0457 2.4169 15 6 2.3080 -0.6237 3.6311 16 6 1.8227 -2.0727 3.7283 17 6 2.1665 -2.8061 2.4289 18 1 3.2484 -2.8271 2.2975 19 6 1.6320 -4.2382 2.4939 20 1 1.8742 -4.7590 1.5675 21 6 2.2752 -4.9702 3.6746 22 6 1.6907 -6.3829 3.7692 23 6 0.1680 -6.2854 3.9055 24 6 -0.3939 -5.5026 2.7158 25 8 0.2139 -4.2101 2.6680 26 6 1.5227 -2.0734 1.2496 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6311 -0.2414 -2.1383 31 1 1.7236 -1.7640 -1.2213 32 1 6.0413 -1.7402 -2.9987 33 1 2.0145 1.0733 2.3365 34 1 0.5766 0.0438 2.5362 35 1 2.0282 -0.0847 4.5362 36 1 3.3921 -0.6097 3.5196 37 1 0.7434 -2.0860 3.8794 38 1 2.3149 -2.5661 4.5664 39 1 3.3527 -5.0314 3.5219 40 1 2.0672 -4.4274 4.5967 41 1 2.1030 -6.8905 4.6412 42 1 1.9411 -6.9423 2.8678 43 1 -0.0825 -5.7692 4.8322 44 1 -0.2614 -7.2871 3.9179 45 1 -1.4723 -5.3932 2.8295 46 1 -0.1783 -6.0400 1.7923 47 1 0.4399 -2.0654 1.3744 48 1 1.7774 -2.5850 0.3214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595790485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:05 Heat of formation + Delta-G solvation = -65.385306 kcal Electronic energy + Delta-G solvation = -24153.366911 eV Core-core repulsion = 21014.123387 eV Total energy + Delta-G solvation = -3139.243524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91302 -38.39023 -35.00549 -33.63217 -32.65434 -31.88111 -29.68931 -29.12054 -27.66983 -25.02751 -24.32037 -23.45166 -22.58028 -21.23901 -20.35063 -19.38457 -18.50665 -16.52689 -16.13995 -16.10883 -15.29146 -14.80142 -14.67732 -14.39307 -14.12879 -13.85255 -13.64121 -13.34617 -13.34158 -12.69233 -12.58712 -12.39314 -12.34606 -11.95517 -11.81543 -11.54961 -11.41307 -11.24532 -11.17032 -10.90584 -10.81646 -10.52519 -10.39526 -10.27209 -10.17353 -9.90386 -9.73191 -9.59340 -9.41873 -9.27189 -8.95861 -8.38561 -7.35352 -5.87720 -3.80912 3.36416 3.44550 3.47909 3.86822 4.48233 4.56851 4.71548 4.78722 4.81337 4.90599 5.16386 5.17336 5.31024 5.34882 5.41230 5.46932 5.56567 5.62060 5.68445 5.70708 5.76808 5.79720 5.85832 5.89011 5.94198 5.97970 5.99497 6.03355 6.04161 6.15069 6.24546 6.27290 6.32432 6.37781 6.50407 6.54544 6.62194 6.74180 6.81454 6.89884 7.22241 7.34455 7.39472 7.89221 7.97381 8.06887 8.76263 9.25591 9.75712 11.26433 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.005782 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.194294 B = 4841.680896 C = 5583.286467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.074 0.926 4 C -0.008 4.008 5 C -0.486 4.486 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.870 3.130 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.290 1.290 13 N -0.509 5.509 14 C 0.054 3.946 15 C -0.116 4.116 16 C -0.108 4.108 17 C -0.075 4.075 18 H 0.092 0.908 19 C 0.096 3.904 20 H 0.058 0.942 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.155 4.155 24 C 0.060 3.940 25 O -0.373 6.373 26 C 0.067 3.933 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.033 0.967 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.096 -7.287 13.595 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.011 4.011 3 H 0.092 0.908 4 C -0.045 4.045 5 C -0.524 4.524 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.549 5.549 9 Si 0.698 3.302 10 H -0.206 1.206 11 H -0.194 1.194 12 H -0.217 1.217 13 N -0.232 5.232 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.093 4.093 18 H 0.111 0.889 19 C 0.038 3.962 20 H 0.076 0.924 21 C -0.188 4.188 22 C -0.160 4.160 23 C -0.192 4.192 24 C -0.017 4.017 25 O -0.292 6.292 26 C -0.061 4.061 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.526 -7.180 13.475 18.545 hybrid contribution -1.126 -0.960 -0.747 1.657 sum -11.652 -8.140 12.728 19.079 Atomic orbital electron populations 1.22554 0.99837 1.01391 1.00813 1.21647 0.89813 0.98409 0.91237 0.90816 1.19712 0.98024 0.94986 0.91799 1.21044 0.89081 1.29935 1.12378 0.90312 1.24992 0.94622 0.96643 0.97474 1.69914 1.06054 1.44257 1.34665 0.86945 0.80417 0.81033 0.81814 1.20642 1.19355 1.21659 1.61962 1.59198 1.01227 1.00815 1.22050 0.96860 0.97647 0.90838 1.21575 1.01490 0.95541 0.96778 1.21564 1.01033 0.95296 0.96666 1.21249 1.00990 0.91387 0.95703 0.88943 1.22154 0.80664 0.96824 0.96571 0.92363 1.22251 1.00736 0.95772 1.00069 1.21595 0.95236 0.97219 1.01993 1.22176 0.96461 1.00647 0.99947 1.22507 0.97541 0.84960 0.96728 1.87955 1.20383 1.27008 1.93835 1.21992 0.96228 0.89821 0.98078 0.92886 0.93717 0.92742 0.96668 0.96861 0.93153 0.91545 0.95820 0.92489 0.91140 0.91906 0.92518 0.90765 0.90771 0.91774 0.91926 0.91267 0.91374 0.89359 0.93471 0.94890 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 8.50 37.15 0.32 -2.88 16 2 C 0.10 1.97 2.31 -67.71 -0.16 1.81 16 3 H 0.07 1.53 8.07 -51.93 -0.42 1.12 16 4 C -0.01 -0.19 3.31 -27.88 -0.09 -0.28 16 5 C -0.49 -13.82 9.34 -34.44 -0.32 -14.14 16 6 H 0.08 2.46 7.99 -52.49 -0.42 2.04 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 9 Si 0.87 22.05 27.37 -169.99 -4.65 17.40 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.58 6.69 56.52 0.38 -6.20 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 13 N -0.51 -9.85 4.30 -226.69 -0.98 -10.82 16 14 C 0.05 0.88 5.04 -3.84 -0.02 0.86 16 15 C -0.12 -1.66 6.09 -26.65 -0.16 -1.82 16 16 C -0.11 -1.50 4.75 -26.61 -0.13 -1.62 16 17 C -0.07 -1.17 2.24 -90.54 -0.20 -1.37 16 18 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 19 C 0.10 1.33 2.38 -26.68 -0.06 1.27 16 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.15 -1.73 5.13 -26.59 -0.14 -1.87 16 22 C -0.12 -1.21 6.03 -26.55 -0.16 -1.37 16 23 C -0.15 -1.44 6.14 -26.59 -0.16 -1.61 16 24 C 0.06 0.65 6.84 37.20 0.25 0.91 16 25 O -0.37 -5.21 9.00 -35.23 -0.32 -5.52 16 26 C 0.07 1.22 3.78 -3.83 -0.01 1.20 16 27 H 0.05 0.91 6.51 -51.93 -0.34 0.57 16 28 H 0.04 0.69 6.67 -51.93 -0.35 0.35 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.02 0.37 7.55 -51.93 -0.39 -0.02 16 31 H 0.01 0.32 5.30 -51.93 -0.28 0.05 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 34 H 0.02 0.37 6.74 -51.93 -0.35 0.02 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.90 7.62 -51.93 -0.40 0.51 16 38 H 0.06 0.70 6.53 -51.93 -0.34 0.36 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.84 6.38 -51.93 -0.33 0.51 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.03 0.60 6.13 -51.93 -0.32 0.28 16 48 H 0.08 1.67 5.98 -51.93 -0.31 1.36 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -30.62 348.43 -9.95 -40.58 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.89 Total: -0.08 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -1.15 Total: -19.20 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.20 Total: -38.43 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.32 Total: -5.52 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.65 Total: 17.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.62 -9.95 -40.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595790485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.810 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds