Wall clock time and date at job start Tue Mar 31 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 109.47446 * 2 1 4 4 C 1.37103 * 120.00073 * 84.75395 * 3 2 1 5 5 H 1.08003 * 119.99824 * 168.19894 * 4 3 2 6 6 C 1.38942 * 119.99927 * 348.20254 * 4 3 2 7 7 N 1.31414 * 120.00238 * 7.88884 * 6 4 3 8 8 Si 1.86803 * 119.99887 * 187.88741 * 6 4 3 9 9 H 1.48507 * 109.46903 * 90.00156 * 8 6 4 10 10 H 1.48503 * 109.47349 * 209.99701 * 8 6 4 11 11 H 1.48497 * 109.47180 * 330.00482 * 8 6 4 12 12 C 1.34776 * 120.00086 * 264.75529 * 3 2 1 13 13 O 1.21289 * 120.00261 * 174.83466 * 12 3 2 14 14 C 1.51112 * 119.99970 * 354.84180 * 12 3 2 15 15 C 1.52667 * 109.09316 * 153.95176 * 14 12 3 16 16 C 1.52469 * 111.03610 * 179.62558 * 15 14 12 17 17 C 1.54552 * 107.52803 * 189.55513 * 16 15 14 18 18 C 1.52984 * 110.20213 * 72.94045 * 16 15 14 19 19 C 1.51938 * 112.36106 * 307.97824 * 16 15 14 20 20 C 1.51969 * 115.42947 * 45.32808 * 19 16 15 21 21 C 1.52827 * 111.70110 * 77.79441 * 20 19 16 22 22 C 1.54488 * 107.83183 * 195.62326 * 20 19 16 23 23 C 1.52690 * 111.77291 * 313.57484 * 20 19 16 24 24 H 1.08996 * 109.46857 * 60.00173 * 1 2 3 25 25 H 1.08999 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47004 * 300.00417 * 1 2 3 27 27 H 1.08999 * 109.47208 * 239.99270 * 2 1 3 28 28 H 1.09012 * 109.46758 * 120.00156 * 2 1 3 29 29 H 0.97005 * 119.99742 * 179.97438 * 7 6 4 30 30 H 1.08697 * 108.71457 * 33.48464 * 14 12 3 31 31 H 1.09334 * 109.25467 * 58.91728 * 15 14 12 32 32 H 1.09332 * 109.26082 * 300.36400 * 15 14 12 33 33 H 1.09002 * 109.47249 * 181.34374 * 17 16 15 34 34 H 1.08996 * 109.47145 * 301.34814 * 17 16 15 35 35 H 1.09005 * 109.47248 * 61.34294 * 17 16 15 36 36 H 1.08997 * 109.46881 * 302.58342 * 18 16 15 37 37 H 1.09000 * 109.46945 * 62.58788 * 18 16 15 38 38 H 1.08999 * 109.47110 * 182.58286 * 18 16 15 39 39 H 1.10093 * 108.69520 * 167.68129 * 19 16 15 40 40 H 1.10110 * 108.65373 * 283.04190 * 19 16 15 41 41 H 1.09000 * 109.47188 * 53.12507 * 21 20 19 42 42 H 1.09003 * 109.47077 * 173.12526 * 21 20 19 43 43 H 1.09002 * 109.47445 * 293.12649 * 21 20 19 44 44 H 1.09007 * 109.47326 * 60.00049 * 22 20 19 45 45 H 1.09003 * 109.47127 * 179.97438 * 22 20 19 46 46 H 1.08998 * 109.46838 * 299.99607 * 22 20 19 47 47 H 1.09233 * 109.36858 * 174.61594 * 23 20 19 48 48 H 1.09197 * 109.41987 * 293.75640 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1446 2.0636 1.1824 5 1 2.6777 3.0025 1.2097 6 6 1.5867 1.5473 2.3454 7 7 1.0747 0.3371 2.3477 8 14 1.5645 2.5737 3.9061 9 1 0.3132 3.3719 3.9558 10 1 1.6275 1.6778 5.0888 11 1 2.7351 3.4874 3.9143 12 6 2.3437 1.9809 -1.1623 13 8 2.6582 3.1522 -1.1731 14 6 2.3163 1.1940 -2.4521 15 6 2.0756 2.1518 -3.6164 16 6 2.0489 1.4031 -4.9443 17 6 2.0465 2.4584 -6.0736 18 6 0.7538 0.5988 -5.0714 19 6 3.2718 0.5220 -5.1358 20 6 3.6669 -0.3166 -3.9316 21 6 2.7703 -1.5448 -3.7795 22 6 5.1091 -0.8215 -4.1594 23 6 3.6659 0.5049 -2.6445 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 0.6856 -0.0234 3.1598 30 1 1.5181 0.4584 -2.3950 31 1 2.8723 2.9003 -3.6381 32 1 1.1215 2.6650 -3.4698 33 1 2.0035 1.9562 -7.0401 34 1 1.1780 3.1075 -5.9624 35 1 2.9564 3.0557 -6.0147 36 1 0.6691 -0.0887 -4.2299 37 1 -0.0978 1.2792 -5.0721 38 1 0.7675 0.0330 -6.0030 39 1 3.0926 -0.1497 -5.9895 40 1 4.1248 1.1593 -5.4161 41 1 2.7555 -2.1021 -4.7161 42 1 3.1580 -2.1814 -2.9841 43 1 1.7580 -1.2270 -3.5298 44 1 5.7805 0.0310 -4.2629 45 1 5.4205 -1.4275 -3.3085 46 1 5.1440 -1.4239 -5.0671 47 1 3.8603 -0.1531 -1.7946 48 1 4.4541 1.2589 -2.6944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596917016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:41 Heat of formation + Delta-G solvation = -54.750355 kcal Electronic energy + Delta-G solvation = -24671.391951 eV Core-core repulsion = 21532.609593 eV Total energy + Delta-G solvation = -3138.782358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.07736 -37.96200 -35.12642 -34.74338 -32.15906 -31.14693 -29.32033 -27.74605 -26.49315 -26.44226 -25.86158 -25.14659 -22.64813 -21.76740 -19.55216 -18.55891 -17.59420 -16.75652 -16.09426 -15.02540 -14.63027 -14.45654 -14.23665 -14.04118 -13.73585 -13.54827 -13.14883 -12.93009 -12.73815 -12.67914 -12.25367 -11.95872 -11.94321 -11.66404 -11.56635 -11.50162 -11.40688 -11.22032 -10.98762 -10.82992 -10.69673 -10.67031 -10.53116 -10.39217 -10.28871 -10.09248 -9.93585 -9.88632 -9.71878 -9.59530 -8.78162 -8.17091 -7.62843 -6.11135 -3.76194 3.19624 3.28126 3.33225 3.97844 4.16327 4.71168 4.76474 4.90189 5.08389 5.17526 5.23597 5.28065 5.35269 5.56718 5.66170 5.71604 5.75732 5.80139 5.82495 5.85090 5.88253 5.96217 5.99161 6.00861 6.09409 6.10595 6.19127 6.28863 6.29846 6.31870 6.37985 6.42313 6.45239 6.60509 6.65759 6.70181 6.72153 6.79080 6.84504 6.92167 6.93792 7.46798 7.67990 7.80012 8.19479 8.63686 9.27049 9.56117 10.10255 10.74585 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023271 B = 0.005332 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.936318 B = 5249.628015 C = 5467.459967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.115 3.885 3 N -0.447 5.447 4 C -0.290 4.290 5 H 0.099 0.901 6 C 0.022 3.978 7 N -0.882 5.882 8 Si 0.927 3.073 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.448 3.552 13 O -0.596 6.596 14 C -0.093 4.093 15 C -0.084 4.084 16 C -0.058 4.058 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.088 4.088 20 C -0.056 4.056 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.092 4.092 24 H 0.014 0.986 25 H 0.034 0.966 26 H 0.084 0.916 27 H 0.029 0.971 28 H 0.121 0.879 29 H 0.263 0.737 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 -5.400 -12.916 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.008 4.008 3 N -0.165 5.165 4 C -0.418 4.418 5 H 0.117 0.883 6 C -0.178 4.178 7 N -0.524 5.524 8 Si 0.754 3.246 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.236 3.764 13 O -0.482 6.482 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.058 4.058 17 C -0.201 4.201 18 C -0.200 4.200 19 C -0.126 4.126 20 C -0.057 4.057 21 C -0.200 4.200 22 C -0.202 4.202 23 C -0.130 4.130 24 H 0.033 0.967 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.047 0.953 28 H 0.139 0.861 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.580 -4.946 -12.743 13.761 hybrid contribution -0.189 0.316 0.819 0.898 sum 1.391 -4.630 -11.924 12.867 Atomic orbital electron populations 1.22151 0.97263 0.99312 1.00975 1.21798 0.94242 0.83615 1.01169 1.43831 1.55781 1.11933 1.04981 1.19765 1.32079 1.05473 0.84518 0.88287 1.25233 0.96653 0.96424 0.99492 1.70068 1.40166 1.14223 1.27967 0.85904 0.78796 0.79329 0.80530 1.20543 1.21071 1.19652 1.20173 0.83933 0.87616 0.84662 1.90482 1.54286 1.16863 1.86559 1.21026 0.98481 0.97978 0.93984 1.21229 1.02474 0.97081 0.91363 1.20413 0.94867 0.95086 0.95432 1.22299 1.01684 0.98475 0.97653 1.22009 0.96604 0.99977 1.01391 1.21349 0.97047 0.97532 0.96662 1.20401 0.95090 0.95041 0.95122 1.21967 1.00261 0.96700 1.01058 1.22290 0.96030 1.00760 1.01099 1.21413 0.96684 0.98553 0.96325 0.96655 0.94685 0.89728 0.95284 0.86137 0.92616 0.89915 0.91287 0.92366 0.93237 0.92807 0.92872 0.92018 0.92934 0.93209 0.92768 0.92545 0.93168 0.92685 0.91944 0.92929 0.92701 0.93152 0.91797 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.51 37.16 0.35 -2.66 16 2 C 0.11 2.61 5.07 -4.05 -0.02 2.58 16 3 N -0.45 -11.47 2.63 -114.65 -0.30 -11.77 16 4 C -0.29 -8.09 9.46 -14.93 -0.14 -8.23 16 5 H 0.10 2.92 7.27 -52.48 -0.38 2.54 16 6 C 0.02 0.57 5.21 -17.47 -0.09 0.48 16 7 N -0.88 -22.44 7.41 55.50 0.41 -22.03 16 8 Si 0.93 20.92 29.56 -169.99 -5.02 15.89 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.45 11.02 6.70 -10.78 -0.07 10.95 16 13 O -0.60 -16.77 15.69 5.55 0.09 -16.68 16 14 C -0.09 -1.75 1.46 -91.87 -0.13 -1.88 16 15 C -0.08 -1.43 3.35 -27.17 -0.09 -1.52 16 16 C -0.06 -0.76 0.70 -154.51 -0.11 -0.87 16 17 C -0.14 -1.69 8.06 37.97 0.31 -1.39 16 18 C -0.14 -1.75 7.97 37.15 0.30 -1.46 16 19 C -0.09 -1.09 3.43 -27.80 -0.10 -1.18 16 20 C -0.06 -0.73 0.69 -154.50 -0.11 -0.84 16 21 C -0.14 -1.74 7.97 37.07 0.30 -1.44 16 22 C -0.14 -1.67 8.10 37.94 0.31 -1.36 16 23 C -0.09 -1.52 3.60 -27.02 -0.10 -1.62 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.08 2.08 6.04 -51.93 -0.31 1.77 16 27 H 0.03 0.58 5.37 -51.93 -0.28 0.30 16 28 H 0.12 2.98 5.78 -51.92 -0.30 2.68 16 29 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.08 1.51 4.35 -52.10 -0.23 1.29 16 31 H 0.07 1.29 7.75 -51.74 -0.40 0.89 16 32 H 0.06 1.06 8.12 -51.74 -0.42 0.64 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.63 8.05 -51.93 -0.42 0.21 16 36 H 0.06 0.80 4.69 -51.93 -0.24 0.55 16 37 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 38 H 0.05 0.53 8.05 -51.93 -0.42 0.11 16 39 H 0.05 0.60 7.95 -51.31 -0.41 0.19 16 40 H 0.06 0.69 7.65 -51.30 -0.39 0.30 16 41 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 43 H 0.06 0.80 4.54 -51.93 -0.24 0.57 16 44 H 0.05 0.60 8.06 -51.93 -0.42 0.19 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 1.12 7.57 -51.80 -0.39 0.72 16 48 H 0.06 1.12 8.12 -51.82 -0.42 0.70 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -28.81 348.78 -7.58 -36.38 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.60 Total: 3.40 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 0.60 Total: -10.45 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.11 Total: -33.80 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.09 Total: -16.68 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.81 -7.58 -36.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.368 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds