Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.51074 * 119.99880 * 180.02562 * 13 12 2 16 16 C 1.52725 * 109.11738 * 299.28827 * 15 13 12 17 17 C 1.52441 * 110.91459 * 179.81827 * 16 15 13 18 18 C 1.53147 * 109.98138 * 286.80727 * 17 16 15 19 19 C 1.54516 * 107.57464 * 170.30897 * 17 16 15 20 20 C 1.51744 * 112.76252 * 51.46042 * 17 16 15 21 21 C 1.51845 * 115.91708 * 316.73973 * 20 17 16 22 22 C 1.53004 * 111.32129 * 280.34180 * 21 20 17 23 23 C 1.54464 * 107.95461 * 162.69134 * 21 20 17 24 24 C 1.52598 * 112.18403 * 44.30825 * 21 20 17 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 30 30 H 1.08588 * 108.86335 * 59.99654 * 15 13 12 31 31 H 1.09306 * 109.24542 * 300.53467 * 16 15 13 32 32 H 1.09319 * 109.23422 * 59.13072 * 16 15 13 33 33 H 1.09001 * 109.47220 * 185.58108 * 18 17 16 34 34 H 1.08997 * 109.46981 * 305.58401 * 18 17 16 35 35 H 1.09007 * 109.46934 * 65.58378 * 18 17 16 36 36 H 1.09000 * 109.47263 * 298.07587 * 19 17 16 37 37 H 1.09001 * 109.47478 * 58.07601 * 19 17 16 38 38 H 1.08998 * 109.46955 * 178.07813 * 19 17 16 39 39 H 1.10202 * 108.66472 * 194.16733 * 20 17 16 40 40 H 1.10235 * 108.60995 * 79.20410 * 20 17 16 41 41 H 1.09004 * 109.47196 * 185.10470 * 22 21 20 42 42 H 1.08999 * 109.47032 * 305.10198 * 22 21 20 43 43 H 1.08995 * 109.47115 * 65.10515 * 22 21 20 44 44 H 1.08998 * 109.46931 * 298.72366 * 23 21 20 45 45 H 1.08997 * 109.46992 * 58.72117 * 23 21 20 46 46 H 1.08994 * 109.46980 * 178.72445 * 23 21 20 47 47 H 1.09219 * 109.45578 * 186.07939 * 24 21 20 48 48 H 1.09196 * 109.48502 * 66.82702 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6511 -0.7300 3.5906 16 6 1.6943 -1.8689 3.9369 17 6 2.1679 -2.6197 5.1762 18 6 3.3884 -3.4787 4.8331 19 6 1.0353 -3.5815 5.6002 20 6 2.4590 -1.6977 6.3456 21 6 3.2180 -0.4249 6.0144 22 6 4.7174 -0.6931 5.8694 23 6 3.0361 0.5581 7.1919 24 6 2.6815 0.2555 4.7583 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1611 -3.4845 29 1 2.2490 -1.6316 1.1527 30 1 3.6462 -1.1161 3.3910 31 1 0.6973 -1.4592 4.1186 32 1 1.6373 -2.5608 3.0924 33 1 3.6595 -4.0862 5.6965 34 1 3.1500 -4.1291 3.9916 35 1 4.2246 -2.8320 4.5669 36 1 0.1463 -3.0052 5.8568 37 1 0.8050 -4.2572 4.7766 38 1 1.3555 -4.1603 6.4665 39 1 3.0283 -2.2590 7.1041 40 1 1.5042 -1.4224 6.8228 41 1 5.2427 0.2506 5.7223 42 1 5.0885 -1.1787 6.7719 43 1 4.8890 -1.3421 5.0107 44 1 1.9781 0.7926 7.3092 45 1 3.4107 0.1011 8.1078 46 1 3.5910 1.4741 6.9895 47 1 3.3230 1.1009 4.5003 48 1 1.6710 0.6237 4.9468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = -84.438171 kcal Electronic energy + Delta-G solvation = -23763.545806 eV Core-core repulsion = 20623.476088 eV Total energy + Delta-G solvation = -3140.069718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.32417 -38.23099 -35.10864 -34.67440 -32.59301 -31.94423 -28.70834 -27.93381 -26.67939 -26.64253 -26.03589 -25.22123 -23.49001 -20.70777 -19.74245 -19.17895 -17.92479 -17.02085 -15.72525 -15.37331 -14.96515 -14.85498 -14.54686 -14.24878 -13.94566 -13.88488 -13.33341 -13.14484 -12.99712 -12.57806 -12.37351 -12.18948 -12.14207 -11.80874 -11.73283 -11.64636 -11.53043 -11.12039 -11.06476 -10.94997 -10.93316 -10.86729 -10.65772 -10.61051 -10.32131 -10.28976 -10.20606 -10.10534 -9.87345 -9.01694 -8.78372 -8.50688 -7.82578 -6.09374 -4.18558 3.26842 3.32048 3.33242 3.50864 4.12467 4.39085 4.53007 4.64943 4.71912 4.97605 5.00354 5.11188 5.22493 5.28773 5.36419 5.40381 5.49649 5.58356 5.59621 5.63763 5.66685 5.74843 5.79367 5.82096 5.87716 5.90916 5.93336 6.02140 6.09331 6.12033 6.15023 6.21334 6.35192 6.40545 6.45539 6.55135 6.59264 6.86760 7.01209 7.19921 7.53170 7.61753 7.73834 7.96192 8.19161 8.74741 8.83010 9.22743 9.49489 10.96521 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.004173 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.998204 B = 6708.554932 C = 7064.634497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.710 5.710 13 C 0.502 3.498 14 O -0.557 6.557 15 C -0.104 4.104 16 C -0.097 4.097 17 C -0.055 4.055 18 C -0.146 4.146 19 C -0.146 4.146 20 C -0.092 4.092 21 C -0.058 4.058 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.084 4.084 25 H 0.013 0.987 26 H 0.089 0.911 27 H 0.025 0.975 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.028 -7.886 17.890 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.357 5.357 13 C 0.287 3.713 14 O -0.437 6.437 15 C -0.126 4.126 16 C -0.134 4.134 17 C -0.055 4.055 18 C -0.203 4.203 19 C -0.203 4.203 20 C -0.129 4.129 21 C -0.059 4.059 22 C -0.201 4.201 23 C -0.202 4.202 24 C -0.122 4.122 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.219 0.781 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.705 -6.907 17.757 19.410 hybrid contribution 0.356 -0.937 -0.942 1.376 sum 4.061 -7.844 16.815 18.994 Atomic orbital electron populations 1.22060 0.98590 0.98975 1.00780 1.18702 0.90948 0.93942 0.80193 0.93535 1.21192 1.32379 1.13158 0.90410 0.92217 1.24889 0.94835 0.94959 0.99016 1.69899 1.35866 1.22470 1.23903 0.86522 0.79161 0.79592 0.81893 1.21141 1.20200 1.20188 1.46525 1.65125 1.13430 1.10615 1.20610 0.78470 0.87421 0.84778 1.90635 1.51418 1.16318 1.85288 1.21231 1.00471 0.96802 0.94064 1.21459 0.98668 0.96201 0.97109 1.20341 0.95517 0.94827 0.94806 1.22086 0.97804 0.99268 1.01170 1.22307 0.97946 0.99045 1.00993 1.21332 1.00129 0.94769 0.96698 1.20414 0.95290 0.94763 0.95384 1.22031 0.94897 1.01623 1.01566 1.22269 1.01586 0.98941 0.97358 1.21275 1.02196 0.96929 0.91777 0.96745 0.89267 0.95584 0.92571 0.78079 0.89088 0.91606 0.91446 0.92988 0.92574 0.92004 0.92809 0.92564 0.92979 0.92508 0.92439 0.92718 0.93035 0.92087 0.92792 0.93087 0.92630 0.91365 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.84 2.56 -69.09 -0.18 6.66 16 3 H 0.05 1.40 7.58 -51.92 -0.39 1.00 16 4 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.18 11.32 55.43 0.63 -24.55 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 9 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -14.98 4.95 -54.80 -0.27 -15.25 16 13 C 0.50 10.13 7.11 -10.80 -0.08 10.05 16 14 O -0.56 -13.57 15.59 5.56 0.09 -13.48 16 15 C -0.10 -1.52 2.33 -91.82 -0.21 -1.74 16 16 C -0.10 -1.22 3.69 -27.16 -0.10 -1.32 16 17 C -0.05 -0.55 0.71 -154.56 -0.11 -0.66 16 18 C -0.15 -1.36 8.01 37.23 0.30 -1.07 16 19 C -0.15 -1.35 8.06 37.95 0.31 -1.04 16 20 C -0.09 -0.90 3.47 -27.96 -0.10 -1.00 16 21 C -0.06 -0.62 0.70 -154.53 -0.11 -0.73 16 22 C -0.14 -1.42 7.98 37.16 0.30 -1.12 16 23 C -0.14 -1.41 8.09 37.93 0.31 -1.10 16 24 C -0.08 -1.16 3.09 -27.03 -0.08 -1.25 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.39 7.13 7.95 -40.82 -0.32 6.80 16 30 H 0.09 1.23 6.16 -52.16 -0.32 0.91 16 31 H 0.07 0.91 8.10 -51.76 -0.42 0.49 16 32 H 0.07 0.85 7.47 -51.75 -0.39 0.46 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.06 0.59 4.69 -51.93 -0.24 0.34 16 36 H 0.05 0.51 8.05 -51.93 -0.42 0.09 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.51 7.96 -51.24 -0.41 0.10 16 40 H 0.06 0.57 7.60 -51.22 -0.39 0.18 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 43 H 0.06 0.61 4.50 -51.93 -0.23 0.38 16 44 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 1.04 8.02 -51.81 -0.42 0.63 16 48 H 0.07 1.03 8.08 -51.82 -0.42 0.61 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -29.98 359.48 -7.84 -37.83 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.87 Total: 4.83 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 0.19 Total: -10.54 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.36 Total: -39.81 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.98 -7.84 -37.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.612 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds