Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.51066 * 120.00084 * 180.02562 * 13 12 2 16 16 C 1.52718 * 109.11952 * 299.29235 * 15 13 12 17 17 C 1.52438 * 110.91706 * 179.81907 * 16 15 13 18 18 C 1.53145 * 109.97838 * 286.80562 * 17 16 15 19 19 C 1.54514 * 107.58117 * 170.30726 * 17 16 15 20 20 C 1.51752 * 112.76218 * 51.45367 * 17 16 15 21 21 C 1.51843 * 115.92139 * 316.74482 * 20 17 16 22 22 C 1.53000 * 111.31711 * 280.34236 * 21 20 17 23 23 C 1.54445 * 107.95401 * 162.68968 * 21 20 17 24 24 C 1.52593 * 112.17919 * 44.30467 * 21 20 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 30 30 H 1.08593 * 108.85920 * 60.00353 * 15 13 12 31 31 H 1.09321 * 109.24691 * 300.52942 * 16 15 13 32 32 H 1.09316 * 109.23442 * 59.12831 * 16 15 13 33 33 H 1.09008 * 109.47194 * 185.58053 * 18 17 16 34 34 H 1.08998 * 109.47283 * 305.58481 * 18 17 16 35 35 H 1.09003 * 109.47368 * 65.58712 * 18 17 16 36 36 H 1.09006 * 109.47041 * 298.07326 * 19 17 16 37 37 H 1.09003 * 109.47037 * 58.06772 * 19 17 16 38 38 H 1.09000 * 109.47921 * 178.07447 * 19 17 16 39 39 H 1.10199 * 108.65836 * 194.16867 * 20 17 16 40 40 H 1.10233 * 108.60721 * 79.20658 * 20 17 16 41 41 H 1.09006 * 109.47175 * 185.10323 * 22 21 20 42 42 H 1.08998 * 109.47244 * 305.10113 * 22 21 20 43 43 H 1.09008 * 109.47470 * 65.10226 * 22 21 20 44 44 H 1.09001 * 109.47252 * 298.72110 * 23 21 20 45 45 H 1.08994 * 109.47420 * 58.72228 * 23 21 20 46 46 H 1.09007 * 109.46879 * 178.72027 * 23 21 20 47 47 H 1.09224 * 109.45545 * 186.08490 * 24 21 20 48 48 H 1.09198 * 109.48655 * 66.82942 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6501 -0.7303 -3.5908 16 6 4.0567 -1.2615 -3.3232 17 6 4.6034 -1.9934 -4.5434 18 6 3.9030 -3.3464 -4.6994 19 6 6.0997 -2.2793 -4.2847 20 6 4.4985 -1.1732 -5.8159 21 6 3.1892 -0.4323 -6.0220 22 6 2.0986 -1.3665 -6.5498 23 6 3.4220 0.6572 -7.0916 24 6 2.7149 0.2640 -4.7497 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 2.2491 -1.6316 -1.1527 30 1 1.9731 -1.5463 -3.8257 31 1 4.7162 -0.4258 -3.0746 32 1 4.0270 -1.9463 -2.4716 33 1 4.3672 -3.9043 -5.5127 34 1 3.9945 -3.9120 -3.7721 35 1 2.8486 -3.1859 -4.9245 36 1 6.6353 -1.3367 -4.1712 37 1 6.2047 -2.8687 -3.3738 38 1 6.5146 -2.8338 -5.1263 39 1 4.6657 -1.8380 -6.6787 40 1 5.3220 -0.4406 -5.8310 41 1 1.2015 -0.7886 -6.7722 42 1 2.4488 -1.8576 -7.4577 43 1 1.8682 -2.1190 -5.7954 44 1 4.1779 1.3582 -6.7377 45 1 3.7628 0.1916 -8.0163 46 1 2.4894 1.1907 -7.2757 47 1 1.7228 0.6894 -4.9160 48 1 3.4066 1.0700 -4.4960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -84.523658 kcal Electronic energy + Delta-G solvation = -23761.426579 eV Core-core repulsion = 20621.353154 eV Total energy + Delta-G solvation = -3140.073425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -40.31828 -38.22976 -35.10126 -34.67641 -32.59091 -31.94557 -28.70515 -27.93174 -26.66961 -26.63812 -26.01592 -25.23209 -23.50086 -20.68265 -19.74087 -19.19257 -17.91379 -17.02726 -15.71183 -15.33669 -15.01391 -14.84862 -14.55089 -14.26368 -13.94676 -13.79065 -13.40654 -13.18478 -12.86945 -12.60390 -12.36146 -12.24109 -12.14382 -11.74457 -11.71493 -11.67908 -11.54055 -11.08483 -11.07275 -10.97011 -10.94250 -10.84861 -10.66303 -10.60185 -10.31562 -10.27177 -10.20914 -10.09900 -9.86685 -9.01652 -8.78397 -8.50905 -7.82640 -6.09672 -4.18707 3.25680 3.32215 3.34015 3.50807 4.12891 4.38690 4.53785 4.65765 4.72643 4.98212 5.00699 5.11843 5.22453 5.29370 5.36943 5.41119 5.49986 5.59241 5.60136 5.63813 5.67540 5.75724 5.79626 5.82620 5.88765 5.90914 5.93710 6.03273 6.10058 6.12939 6.15676 6.22168 6.35835 6.41303 6.46446 6.55153 6.59712 6.86547 7.00946 7.19783 7.53056 7.61774 7.73758 7.96038 8.18923 8.74767 8.83004 9.22709 9.49424 10.96321 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023150 B = 0.004351 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.211519 B = 6433.481619 C = 7142.863920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.502 3.498 14 O -0.557 6.557 15 C -0.104 4.104 16 C -0.097 4.097 17 C -0.055 4.055 18 C -0.146 4.146 19 C -0.146 4.146 20 C -0.092 4.092 21 C -0.058 4.058 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.084 4.084 25 H 0.089 0.911 26 H 0.025 0.975 27 H 0.014 0.986 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 -7.281 -17.273 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.357 5.357 13 C 0.287 3.713 14 O -0.437 6.437 15 C -0.125 4.125 16 C -0.135 4.135 17 C -0.055 4.055 18 C -0.203 4.203 19 C -0.203 4.203 20 C -0.129 4.129 21 C -0.058 4.058 22 C -0.201 4.201 23 C -0.202 4.202 24 C -0.122 4.122 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.219 0.781 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.139 -6.300 -17.133 19.259 hybrid contribution 0.407 -0.908 0.961 1.383 sum 6.546 -7.208 -16.172 18.877 Atomic orbital electron populations 1.22068 0.98611 0.98993 1.00804 1.18707 0.90934 0.93959 0.80216 0.93524 1.21224 1.32284 1.13136 0.90386 0.92162 1.24887 0.94828 0.94971 0.99023 1.69906 1.35936 1.22510 1.23792 0.86468 0.78600 0.79854 0.82288 1.20583 1.21092 1.19864 1.46527 1.65097 1.13454 1.10619 1.20613 0.78367 0.87468 0.84843 1.90636 1.51559 1.16253 1.85215 1.21228 0.97739 0.99149 0.94404 1.21466 0.94836 1.00144 0.97061 1.20343 0.95304 0.95136 0.94714 1.22085 1.00913 0.95822 1.01486 1.22307 0.95223 1.01432 1.01332 1.21333 0.96610 0.98452 0.96537 1.20408 0.94925 0.95230 0.95283 1.22031 0.98147 0.99414 1.00505 1.22268 1.01625 0.98217 0.98047 1.21277 1.02295 0.96864 0.91747 0.89246 0.95568 0.96731 0.92631 0.78077 0.89162 0.91526 0.91364 0.93000 0.92573 0.92050 0.92786 0.92538 0.93002 0.92522 0.92421 0.92745 0.93032 0.92109 0.92772 0.93088 0.92647 0.91410 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.83 2.56 -69.08 -0.18 6.65 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.18 11.32 55.43 0.63 -24.55 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.71 -14.98 4.95 -54.80 -0.27 -15.25 16 13 C 0.50 10.12 7.11 -10.81 -0.08 10.05 16 14 O -0.56 -13.57 15.59 5.55 0.09 -13.48 16 15 C -0.10 -1.51 2.33 -91.82 -0.21 -1.73 16 16 C -0.10 -1.25 3.69 -27.16 -0.10 -1.35 16 17 C -0.05 -0.56 0.71 -154.56 -0.11 -0.67 16 18 C -0.15 -1.37 8.01 37.23 0.30 -1.07 16 19 C -0.15 -1.39 8.06 37.95 0.31 -1.08 16 20 C -0.09 -0.91 3.47 -27.95 -0.10 -1.01 16 21 C -0.06 -0.62 0.70 -154.55 -0.11 -0.73 16 22 C -0.14 -1.40 7.98 37.16 0.30 -1.11 16 23 C -0.14 -1.41 8.08 37.92 0.31 -1.10 16 24 C -0.08 -1.16 3.09 -27.02 -0.08 -1.25 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.39 7.13 7.95 -40.82 -0.32 6.80 16 30 H 0.09 1.21 6.16 -52.16 -0.32 0.88 16 31 H 0.07 0.94 8.10 -51.75 -0.42 0.52 16 32 H 0.07 0.88 7.47 -51.75 -0.39 0.49 16 33 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.06 0.58 4.69 -51.93 -0.24 0.34 16 36 H 0.05 0.52 8.05 -51.93 -0.42 0.11 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.51 7.96 -51.24 -0.41 0.10 16 40 H 0.06 0.58 7.60 -51.23 -0.39 0.19 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 43 H 0.06 0.60 4.50 -51.92 -0.23 0.36 16 44 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 1.03 8.02 -51.80 -0.42 0.61 16 48 H 0.07 1.04 8.09 -51.82 -0.42 0.62 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -29.99 359.48 -7.84 -37.83 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.87 Total: 4.89 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 0.19 Total: -10.61 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.36 Total: -39.80 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.99 -7.84 -37.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.696 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds