Wall clock time and date at job start Tue Mar 31 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47449 * 2 1 4 4 C 1.53001 * 109.47278 * 120.00484 * 2 1 3 5 5 C 1.52992 * 109.47318 * 174.09523 * 4 2 1 6 6 H 1.09006 * 109.47040 * 54.97252 * 5 4 2 7 7 C 1.53002 * 109.46980 * 294.97888 * 5 4 2 8 8 C 1.53000 * 109.47084 * 174.97505 * 5 4 2 9 9 C 1.50703 * 109.47135 * 185.00007 * 8 5 4 10 10 O 1.21287 * 119.99891 * 359.97438 * 9 8 5 11 11 N 1.34780 * 120.00115 * 180.02562 * 9 8 5 12 12 C 1.46957 * 120.64995 * 359.81858 * 11 9 8 13 13 C 1.53193 * 108.88863 * 233.52897 * 12 11 9 14 14 C 1.53041 * 109.31482 * 305.45250 * 13 12 11 15 15 C 1.53038 * 109.54134 * 61.35766 * 14 13 12 16 16 H 1.09001 * 109.49271 * 58.58781 * 15 14 13 17 17 C 1.50706 * 109.52418 * 178.67066 * 15 14 13 18 18 H 1.08000 * 119.99900 * 119.85584 * 17 15 14 19 19 C 1.37874 * 119.99594 * 299.85753 * 17 15 14 20 20 N 1.31512 * 120.00528 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99643 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46934 * 60.00001 * 21 19 17 23 23 H 1.48498 * 109.46916 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47185 * 299.99985 * 21 19 17 25 25 C 1.46923 * 120.62860 * 179.97438 * 11 9 8 26 26 H 1.09003 * 109.46895 * 55.20619 * 1 2 3 27 27 H 1.08992 * 109.47280 * 175.20738 * 1 2 3 28 28 H 1.09003 * 109.47115 * 295.21261 * 1 2 3 29 29 H 1.09004 * 109.46860 * 240.00421 * 2 1 3 30 30 H 1.08996 * 109.46933 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47111 * 300.00192 * 3 2 1 32 32 H 1.09000 * 109.46481 * 59.99908 * 3 2 1 33 33 H 1.09001 * 109.46705 * 54.09384 * 4 2 1 34 34 H 1.09002 * 109.46790 * 294.09776 * 4 2 1 35 35 H 1.09000 * 109.47092 * 305.79562 * 7 5 4 36 36 H 1.08997 * 109.47834 * 65.79998 * 7 5 4 37 37 H 1.09011 * 109.46847 * 185.80488 * 7 5 4 38 38 H 1.08994 * 109.47059 * 65.00382 * 8 5 4 39 39 H 1.08994 * 109.47335 * 304.99806 * 8 5 4 40 40 H 1.09004 * 109.46253 * 113.74845 * 12 11 9 41 41 H 1.08991 * 109.60013 * 353.39484 * 12 11 9 42 42 H 1.08998 * 109.49955 * 185.49366 * 13 12 11 43 43 H 1.09002 * 109.49249 * 65.39799 * 13 12 11 44 44 H 1.09008 * 109.45514 * 301.34022 * 14 13 12 45 45 H 1.08994 * 109.45005 * 181.38147 * 14 13 12 46 46 H 0.96995 * 120.00591 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.59035 * 6.60980 * 25 11 9 48 48 H 1.09000 * 109.59062 * 246.32307 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5628 -0.8511 1.1772 6 1 4.0050 0.1347 1.0331 7 6 3.9425 -1.7568 0.0039 8 6 4.0850 -1.4589 2.4806 9 6 5.5918 -1.4735 2.4597 10 8 6.1892 -1.0409 1.4969 11 7 6.2756 -1.9683 3.5105 12 6 5.5664 -2.4935 4.6856 13 6 6.1017 -1.7965 5.9404 14 6 7.6224 -1.9584 5.9995 15 6 8.2555 -1.2979 4.7727 16 1 7.9834 -0.2428 4.7466 17 6 9.7550 -1.4290 4.8478 18 1 10.2909 -1.9526 4.0699 19 6 10.4426 -0.8806 5.9095 20 7 9.7902 -0.2426 6.8565 21 14 12.3012 -1.0437 6.0029 22 1 12.9146 -0.4060 4.8102 23 1 12.7958 -0.3727 7.2318 24 1 12.6706 -2.4814 6.0404 25 6 7.7446 -1.9898 3.5045 26 1 -0.3633 0.5864 -0.8440 27 1 -0.3633 -1.0240 -0.0859 28 1 -0.3633 0.4378 0.9298 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.5929 -1.7139 1.3035 34 1 1.7655 -0.1502 2.1360 35 1 3.4180 -2.7080 0.0946 36 1 3.6619 -1.2751 -0.9327 37 1 5.0183 -1.9328 0.0141 38 1 3.7131 -2.4785 2.5806 39 1 3.7392 -0.8616 3.3242 40 1 5.7372 -3.5672 4.7630 41 1 4.4988 -2.2975 4.5861 42 1 5.6532 -2.2466 6.8260 43 1 5.8499 -0.7366 5.9032 44 1 7.8744 -3.0188 6.0117 45 1 8.0029 -1.4844 6.9042 46 1 10.2739 0.1436 7.6032 47 1 8.1143 -1.4614 2.6257 48 1 8.0949 -3.0218 3.4846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597913695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:10 Heat of formation + Delta-G solvation = -78.858240 kcal Electronic energy + Delta-G solvation = -23037.771317 eV Core-core repulsion = 19897.943563 eV Total energy + Delta-G solvation = -3139.827754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 6.49 seconds Orbital eigenvalues (eV) -39.80987 -37.77654 -36.58793 -33.60886 -33.37222 -31.33706 -30.31275 -27.88535 -27.28593 -26.63908 -25.05649 -24.25729 -21.74666 -21.31895 -19.71946 -19.37923 -18.13062 -16.84282 -16.17757 -15.74364 -15.22341 -15.01259 -14.62121 -14.19962 -13.91064 -13.76702 -13.47269 -13.09115 -12.93988 -12.78278 -12.68320 -12.39619 -12.20405 -11.98706 -11.84704 -11.74804 -11.41066 -11.29579 -10.99894 -10.93823 -10.82977 -10.78059 -10.58027 -10.43750 -10.35310 -10.22148 -9.95124 -9.78728 -9.44202 -9.12432 -8.81632 -8.38048 -7.85199 -6.01791 -4.08926 3.12409 3.31426 3.35745 3.38591 3.60041 4.42527 4.59578 4.72155 4.77852 4.95532 5.09017 5.16753 5.27202 5.35841 5.44122 5.47928 5.53118 5.53657 5.63330 5.65352 5.70930 5.74878 5.79289 5.81808 5.85252 6.00235 6.01153 6.08681 6.15932 6.18549 6.28700 6.34106 6.42454 6.49450 6.50730 6.58284 6.68769 6.82670 7.00864 7.18092 7.34303 7.69024 7.92868 8.06369 8.08227 8.38181 8.72478 8.94794 9.55905 11.03763 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.003343 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.946915 B = 8374.611521 C = 8608.936351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.077 4.077 6 H 0.081 0.919 7 C -0.151 4.151 8 C -0.136 4.136 9 C 0.508 3.492 10 O -0.549 6.549 11 N -0.605 5.605 12 C 0.110 3.890 13 C -0.135 4.135 14 C -0.112 4.112 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.117 3.883 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.261 0.739 47 H 0.078 0.922 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.512 -2.505 -7.632 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.147 4.147 5 C -0.096 4.096 6 H 0.099 0.901 7 C -0.208 4.208 8 C -0.176 4.176 9 C 0.296 3.704 10 O -0.428 6.428 11 N -0.337 5.337 12 C -0.014 4.014 13 C -0.173 4.173 14 C -0.150 4.150 15 C 0.022 3.978 16 H 0.047 0.953 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.004 4.004 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.155 -2.188 -7.962 19.039 hybrid contribution 0.970 -0.122 0.370 1.045 sum -16.186 -2.310 -7.592 18.026 Atomic orbital electron populations 1.21847 0.95626 1.01391 1.01550 1.21150 0.95173 0.96527 0.98845 1.21908 1.01727 0.95835 1.01330 1.21723 0.95110 1.00262 0.97646 1.20939 0.94372 1.00531 0.93727 0.90106 1.21969 1.03357 0.98266 0.97240 1.21760 0.93052 1.02881 0.99897 1.20568 0.89811 0.77558 0.82460 1.90621 1.70939 1.47573 1.33681 1.48344 1.08418 1.60405 1.16581 1.21734 0.95486 0.97917 0.86234 1.22002 1.00041 1.00055 0.95237 1.21628 0.90139 0.99381 1.03898 1.18963 0.94785 0.95272 0.88807 0.95333 1.21050 0.91311 1.35557 1.07400 0.92558 1.24934 0.98328 0.94910 0.95627 1.69859 1.35378 1.36386 1.11208 0.86642 0.85621 0.78274 0.77382 1.20220 1.21308 1.20257 1.21967 0.76183 1.00430 1.01855 0.92958 0.92926 0.92829 0.90936 0.92028 0.93120 0.92834 0.92091 0.92040 0.93742 0.93060 0.90630 0.89540 0.89350 0.92074 0.91119 0.92505 0.92413 0.94618 0.88692 0.92925 0.90384 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.78 16 2 C -0.10 -0.88 2.79 -90.62 -0.25 -1.14 16 3 C -0.15 -1.41 8.97 37.16 0.33 -1.07 16 4 C -0.11 -1.04 4.14 -26.73 -0.11 -1.15 16 5 C -0.08 -0.93 1.91 -90.62 -0.17 -1.10 16 6 H 0.08 1.12 6.19 -51.93 -0.32 0.80 16 7 C -0.15 -1.88 8.60 37.16 0.32 -1.56 16 8 C -0.14 -1.74 3.52 -27.88 -0.10 -1.84 16 9 C 0.51 8.99 7.37 -10.98 -0.08 8.91 16 10 O -0.55 -11.50 13.41 5.55 0.07 -11.42 16 11 N -0.61 -11.17 2.98 -172.72 -0.51 -11.68 16 12 C 0.11 1.68 6.34 -3.69 -0.02 1.66 16 13 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 14 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 15 C 0.04 1.01 2.25 -91.63 -0.21 0.80 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.12 2.55 5.65 -3.69 -0.02 2.53 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 30 H 0.06 0.65 6.49 -51.93 -0.34 0.31 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.58 6.73 -51.93 -0.35 0.23 16 37 H 0.07 1.17 5.87 -51.92 -0.30 0.86 16 38 H 0.09 0.95 7.95 -51.93 -0.41 0.53 16 39 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.86 5.94 -51.93 -0.31 0.55 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 45 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.08 1.84 7.01 -51.93 -0.36 1.47 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -29.28 360.62 -8.96 -38.24 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.91 Total: 0.30 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.66 Total: -12.62 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.11 Total: -36.10 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.07 Total: -11.42 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.28 -8.96 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.616 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.49 seconds