Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47141 * 2 1 4 4 C 1.52994 * 109.47403 * 120.00575 * 2 1 3 5 5 C 1.53005 * 109.47537 * 175.00130 * 4 2 1 6 6 H 1.08995 * 109.46639 * 54.99447 * 5 4 2 7 7 C 1.53007 * 109.46875 * 294.99978 * 5 4 2 8 8 C 1.52996 * 109.47338 * 175.00224 * 5 4 2 9 9 C 1.50700 * 109.46981 * 184.99955 * 8 5 4 10 10 O 1.21283 * 120.00281 * 359.97438 * 9 8 5 11 11 N 1.34773 * 119.99929 * 179.97438 * 9 8 5 12 12 C 1.46931 * 120.63029 * 359.97438 * 11 9 8 13 13 C 1.53200 * 108.77279 * 126.41292 * 12 11 9 14 14 C 1.53039 * 109.31160 * 54.63574 * 13 12 11 15 15 C 1.53046 * 109.52798 * 298.64112 * 14 13 12 16 16 H 1.08994 * 109.49581 * 301.40708 * 15 14 13 17 17 C 1.50700 * 109.49577 * 181.31010 * 15 14 13 18 18 H 1.07998 * 120.00200 * 239.99881 * 17 15 14 19 19 C 1.37878 * 120.00002 * 60.00123 * 17 15 14 20 20 N 1.31521 * 120.00111 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 119.99984 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47260 * 59.99839 * 21 19 17 23 23 H 1.48503 * 109.47228 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47253 * 300.00182 * 21 19 17 25 25 C 1.46928 * 120.63179 * 180.02562 * 11 9 8 26 26 H 1.08997 * 109.47436 * 299.99333 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99983 * 1 2 3 28 28 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47148 * 240.00570 * 2 1 3 30 30 H 1.08996 * 109.47293 * 300.00776 * 3 2 1 31 31 H 1.09005 * 109.46634 * 60.00256 * 3 2 1 32 32 H 1.08995 * 109.47221 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47240 * 54.99765 * 4 2 1 34 34 H 1.09006 * 109.47076 * 295.00168 * 4 2 1 35 35 H 1.08995 * 109.46992 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.47070 * 300.00119 * 7 5 4 37 37 H 1.08998 * 109.46904 * 59.99886 * 7 5 4 38 38 H 1.09000 * 109.47400 * 64.99645 * 8 5 4 39 39 H 1.09001 * 109.46877 * 304.99611 * 8 5 4 40 40 H 1.08998 * 109.58425 * 6.63242 * 12 11 9 41 41 H 1.08995 * 109.70793 * 246.26860 * 12 11 9 42 42 H 1.08997 * 109.49280 * 294.68615 * 13 12 11 43 43 H 1.08996 * 109.52417 * 174.60413 * 13 12 11 44 44 H 1.09002 * 109.46050 * 58.65698 * 14 13 12 45 45 H 1.09004 * 109.46034 * 178.62914 * 14 13 12 46 46 H 0.96991 * 119.99542 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.58766 * 353.37877 * 25 11 9 48 48 H 1.08998 * 109.58326 * 113.79952 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1879 6 1 3.9953 0.1611 1.0526 7 6 3.9650 -1.7252 0.0124 8 6 4.0852 -1.4396 2.4916 9 6 5.5922 -1.4347 2.4819 10 8 6.1910 -0.9889 1.5261 11 7 6.2744 -1.9258 3.5354 12 6 5.5630 -2.4687 4.7007 13 6 6.0775 -3.8852 4.9765 14 6 7.5998 -3.8498 5.1297 15 6 8.2334 -3.3501 3.8293 16 1 7.9462 -4.0075 3.0087 17 6 9.7338 -3.3461 3.9699 18 1 10.2839 -2.4230 3.8617 19 6 10.4043 -4.5209 4.2368 20 7 9.7345 -5.6450 4.3690 21 14 12.2642 -4.5161 4.4104 22 1 12.6548 -3.6185 5.5271 23 1 12.7385 -5.8946 4.6936 24 1 12.8780 -4.0314 3.1481 25 6 7.7437 -1.9274 3.5409 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6054 -1.7199 1.2950 34 1 1.7516 -0.1585 2.1369 35 1 5.0513 -1.8030 -0.0315 36 1 3.5344 -2.7174 0.1476 37 1 3.5943 -1.2917 -0.9164 38 1 3.7257 -2.4646 2.5831 39 1 3.7254 -0.8516 3.3360 40 1 4.4936 -2.5025 4.4928 41 1 5.7465 -1.8376 5.5702 42 1 5.8106 -4.5374 4.1450 43 1 5.6281 -4.2637 5.8945 44 1 7.8671 -3.1781 5.9455 45 1 7.9660 -4.8526 5.3502 46 1 10.2063 -6.4715 4.5564 47 1 8.1131 -1.6038 2.5678 48 1 8.1068 -1.2515 4.3150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597913697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = -78.500121 kcal Electronic energy + Delta-G solvation = -23050.779491 eV Core-core repulsion = 19910.967266 eV Total energy + Delta-G solvation = -3139.812225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 5.93 seconds Orbital eigenvalues (eV) -39.80754 -37.78314 -36.58969 -33.60654 -33.36768 -31.33293 -30.31247 -27.87462 -27.30114 -26.62145 -25.05582 -24.25592 -21.74184 -21.33954 -19.72730 -19.32451 -18.16770 -16.83982 -16.19183 -15.68500 -15.19978 -15.08213 -14.56835 -14.27006 -13.93704 -13.74027 -13.46614 -13.22018 -12.89537 -12.72451 -12.48698 -12.39210 -12.30165 -11.98715 -11.88175 -11.72495 -11.41893 -11.30101 -10.99144 -10.96095 -10.83121 -10.76025 -10.59893 -10.41159 -10.35047 -10.21359 -9.94767 -9.75659 -9.43301 -9.15089 -8.81103 -8.37991 -7.84855 -6.01713 -4.08884 3.12587 3.31412 3.35743 3.38622 3.60258 4.42551 4.59390 4.71659 4.77450 4.95625 5.09349 5.16395 5.27161 5.35906 5.42564 5.49783 5.51222 5.52817 5.64491 5.65341 5.71452 5.74448 5.80289 5.82956 5.85467 5.99900 6.02279 6.08970 6.15606 6.18623 6.29861 6.34339 6.42732 6.49006 6.51588 6.64114 6.69062 6.83053 7.00915 7.18511 7.34523 7.69113 7.93055 8.06675 8.08471 8.38339 8.72787 8.94845 9.55931 11.03738 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034905 B = 0.003323 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.979121 B = 8422.856434 C = 8752.902827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.110 4.110 5 C -0.076 4.076 6 H 0.079 0.921 7 C -0.154 4.154 8 C -0.136 4.136 9 C 0.508 3.492 10 O -0.549 6.549 11 N -0.605 5.605 12 C 0.109 3.891 13 C -0.135 4.135 14 C -0.113 4.113 15 C 0.041 3.959 16 H 0.028 0.972 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.117 3.883 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.261 0.739 47 H 0.078 0.922 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 8.109 -2.772 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.148 4.148 5 C -0.095 4.095 6 H 0.098 0.902 7 C -0.211 4.211 8 C -0.176 4.176 9 C 0.296 3.704 10 O -0.428 6.428 11 N -0.337 5.337 12 C -0.014 4.014 13 C -0.173 4.173 14 C -0.151 4.151 15 C 0.022 3.978 16 H 0.047 0.953 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.004 4.004 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.039 8.149 -3.229 19.161 hybrid contribution 0.965 -0.207 0.342 1.044 sum -16.074 7.942 -2.887 18.160 Atomic orbital electron populations 1.21845 0.95615 1.01490 1.01456 1.21158 0.95184 0.96485 0.98934 1.21902 1.01687 0.95879 1.01264 1.21717 0.95166 1.00317 0.97558 1.20935 0.94257 1.00462 0.93815 0.90234 1.21989 1.03685 0.98327 0.97053 1.21770 0.93072 1.03022 0.99739 1.20564 0.89817 0.77750 0.82260 1.90616 1.70861 1.47528 1.33822 1.48336 1.08413 1.59605 1.17388 1.21723 0.95486 0.95952 0.88220 1.22002 1.00114 0.94679 1.00531 1.21633 0.90075 1.04300 0.99056 1.18959 0.94881 0.89765 0.94221 0.95339 1.21053 0.91269 0.94240 1.48756 0.92561 1.24938 0.98290 0.95501 0.95084 1.69863 1.35304 0.98740 1.48924 0.86640 0.85639 0.76957 0.78665 1.20260 1.21309 1.20227 1.21971 0.76177 1.00599 1.01670 0.92883 0.92983 0.92847 0.90840 0.93122 0.92926 0.92043 0.92013 0.92140 0.90446 0.93584 0.93068 0.89325 0.89584 0.91141 0.92065 0.92422 0.92529 0.94626 0.88653 0.92930 0.90367 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.10 -0.88 2.78 -90.62 -0.25 -1.13 16 3 C -0.15 -1.34 8.96 37.16 0.33 -1.01 16 4 C -0.11 -1.04 4.15 -26.73 -0.11 -1.15 16 5 C -0.08 -0.92 1.90 -90.62 -0.17 -1.09 16 6 H 0.08 1.06 6.16 -51.93 -0.32 0.74 16 7 C -0.15 -2.02 8.70 37.16 0.32 -1.70 16 8 C -0.14 -1.74 3.52 -27.88 -0.10 -1.84 16 9 C 0.51 8.99 7.42 -10.99 -0.08 8.91 16 10 O -0.55 -11.50 13.38 5.56 0.07 -11.42 16 11 N -0.61 -11.17 2.97 -172.75 -0.51 -11.68 16 12 C 0.11 1.68 6.34 -3.70 -0.02 1.66 16 13 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 14 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 15 C 0.04 1.01 2.25 -91.64 -0.21 0.80 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.51 -14.01 8.56 -34.44 -0.29 -14.31 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.04 11.31 55.43 0.63 -24.41 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.12 2.55 5.66 -3.70 -0.02 2.53 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.62 6.46 -51.93 -0.34 0.28 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.28 5.95 -51.93 -0.31 0.97 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.60 6.46 -51.93 -0.34 0.26 16 38 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 39 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 40 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.08 1.84 7.01 -51.93 -0.36 1.47 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -29.26 360.32 -8.94 -38.20 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.89 Total: 0.39 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.65 Total: -12.66 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.11 Total: -36.10 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.07 Total: -11.42 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.26 -8.94 -38.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.302 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.93 seconds