Wall clock time and date at job start Tue Mar 31 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46944 * 2 1 4 4 C 1.52997 * 109.46954 * 119.99679 * 2 1 3 5 5 C 1.53002 * 109.47319 * 175.05623 * 4 2 1 6 6 H 1.09004 * 109.46876 * 54.01509 * 5 4 2 7 7 C 1.52998 * 109.47577 * 174.01100 * 5 4 2 8 8 C 1.52995 * 109.47284 * 294.01825 * 5 4 2 9 9 C 1.50704 * 109.47594 * 174.99851 * 8 5 4 10 10 O 1.21280 * 119.99244 * 359.97438 * 9 8 5 11 11 N 1.34772 * 120.00203 * 179.97438 * 9 8 5 12 12 C 1.46925 * 120.63324 * 0.02562 * 11 9 8 13 13 C 1.53190 * 108.78035 * 126.36444 * 12 11 9 14 14 C 1.53036 * 109.30845 * 54.63473 * 13 12 11 15 15 C 1.53038 * 109.54055 * 298.63328 * 14 13 12 16 16 H 1.09001 * 109.49996 * 301.38307 * 15 14 13 17 17 C 1.50702 * 109.50099 * 181.31860 * 15 14 13 18 18 H 1.07998 * 120.00182 * 240.00667 * 17 15 14 19 19 C 1.37871 * 120.00040 * 59.99789 * 17 15 14 20 20 N 1.31520 * 119.99919 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00180 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46945 * 60.00401 * 21 19 17 23 23 H 1.48502 * 109.47217 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47438 * 300.00466 * 21 19 17 25 25 C 1.46925 * 120.62982 * 179.71527 * 11 9 8 26 26 H 1.09007 * 109.47135 * 300.00592 * 1 2 3 27 27 H 1.09004 * 109.47128 * 59.99810 * 1 2 3 28 28 H 1.08996 * 109.47681 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47110 * 240.00092 * 2 1 3 30 30 H 1.08994 * 109.46880 * 66.13184 * 3 2 1 31 31 H 1.09004 * 109.46482 * 186.12945 * 3 2 1 32 32 H 1.08992 * 109.47013 * 306.12330 * 3 2 1 33 33 H 1.08999 * 109.47721 * 295.06062 * 4 2 1 34 34 H 1.08999 * 109.47381 * 55.05969 * 4 2 1 35 35 H 1.08999 * 109.47196 * 295.74850 * 7 5 4 36 36 H 1.09001 * 109.46636 * 55.73999 * 7 5 4 37 37 H 1.08997 * 109.47231 * 175.74467 * 7 5 4 38 38 H 1.09007 * 109.46541 * 294.99464 * 8 5 4 39 39 H 1.09000 * 109.47399 * 54.99260 * 8 5 4 40 40 H 1.08996 * 109.58772 * 246.15715 * 12 11 9 41 41 H 1.09007 * 109.58691 * 6.43231 * 12 11 9 42 42 H 1.09000 * 109.49864 * 174.58570 * 13 12 11 43 43 H 1.09001 * 109.49515 * 294.68927 * 13 12 11 44 44 H 1.08996 * 109.46277 * 58.65771 * 14 13 12 45 45 H 1.09011 * 109.46108 * 178.63019 * 14 13 12 46 46 H 0.97000 * 120.00052 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.58415 * 353.42617 * 25 11 9 48 48 H 1.09007 * 109.58516 * 113.84395 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5649 -0.8298 1.1888 6 1 3.9939 0.1607 1.0365 7 6 4.0871 -1.4152 2.5023 8 6 3.9655 -1.7429 0.0284 9 6 5.4663 -1.7527 -0.1082 10 8 6.1482 -1.0937 0.6479 11 7 6.0506 -2.4937 -1.0705 12 6 5.2378 -3.2967 -1.9942 13 6 5.6195 -2.9313 -3.4321 14 6 7.1295 -3.1011 -3.6135 15 6 7.8687 -2.1568 -2.6628 16 1 7.5719 -1.1282 -2.8681 17 6 9.3550 -2.3013 -2.8650 18 1 9.9839 -2.6134 -2.0443 19 6 9.9121 -2.0353 -4.0978 20 7 9.1464 -1.6550 -5.0971 21 14 11.7545 -2.2152 -4.3487 22 1 12.1578 -3.6164 -4.0676 23 1 12.0987 -1.8725 -5.7520 24 1 12.4715 -1.2991 -3.4258 25 6 7.5121 -2.5086 -1.2200 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.7690 1.9237 0.9397 31 1 3.1244 1.4445 -0.1097 32 1 1.5899 1.9870 -0.8300 33 1 1.7507 -0.1588 2.1371 34 1 1.6061 -1.7201 1.2947 35 1 3.8677 -0.7276 3.3191 36 1 3.6008 -2.3720 2.6923 37 1 5.1647 -1.5630 2.4312 38 1 3.6119 -2.7553 0.2240 39 1 3.5190 -1.3742 -0.8951 40 1 5.4294 -4.3560 -1.8232 41 1 4.1812 -3.0854 -1.8294 42 1 5.0936 -3.5872 -4.1259 43 1 5.3435 -1.8955 -3.6297 44 1 7.4084 -4.1312 -3.3917 45 1 7.4005 -2.8652 -4.6427 46 1 9.5384 -1.4675 -5.9644 47 1 7.9558 -1.7755 -0.5463 48 1 7.8935 -3.5022 -0.9844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597913698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:51 Heat of formation + Delta-G solvation = -78.523960 kcal Electronic energy + Delta-G solvation = -23300.614490 eV Core-core repulsion = 20160.801232 eV Total energy + Delta-G solvation = -3139.813259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84579 -37.75345 -36.56776 -33.55981 -33.40552 -31.33616 -30.35753 -27.94354 -27.29058 -26.57900 -25.05347 -24.21682 -21.70703 -21.09204 -20.14700 -19.22742 -18.14443 -16.91385 -16.19578 -15.72355 -15.18767 -14.82519 -14.59550 -14.36190 -13.92811 -13.60627 -13.43903 -13.08422 -12.93382 -12.78254 -12.63796 -12.35693 -12.18901 -12.02576 -11.89086 -11.79285 -11.44392 -11.30474 -11.06917 -10.95755 -10.82162 -10.76131 -10.54783 -10.33775 -10.33215 -10.23133 -9.94929 -9.78833 -9.43602 -9.12518 -8.81270 -8.37800 -7.85188 -6.01648 -4.08846 3.12712 3.31534 3.35855 3.38733 3.61186 4.42710 4.61842 4.71448 4.79056 4.95682 5.03864 5.24596 5.27101 5.35048 5.43454 5.49707 5.52937 5.56997 5.63861 5.66747 5.72538 5.78014 5.81479 5.82243 5.88566 5.96074 6.05278 6.08783 6.15273 6.20623 6.32354 6.34308 6.43333 6.50239 6.51158 6.55369 6.68669 6.83486 7.01540 7.18325 7.34515 7.69108 7.93022 8.06766 8.08620 8.38265 8.72916 8.94881 9.56005 11.03808 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.003759 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.894386 B = 7447.877127 C = 7745.049522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.150 4.150 4 C -0.109 4.109 5 C -0.077 4.077 6 H 0.081 0.919 7 C -0.152 4.152 8 C -0.137 4.137 9 C 0.508 3.492 10 O -0.549 6.549 11 N -0.605 5.605 12 C 0.109 3.891 13 C -0.135 4.135 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.117 3.883 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.261 0.739 47 H 0.078 0.922 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.636 -0.713 8.177 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.207 4.207 4 C -0.146 4.146 5 C -0.096 4.096 6 H 0.099 0.901 7 C -0.209 4.209 8 C -0.177 4.177 9 C 0.296 3.704 10 O -0.429 6.429 11 N -0.337 5.337 12 C -0.014 4.014 13 C -0.173 4.173 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.046 0.954 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.004 4.004 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.256 -0.324 8.383 18.293 hybrid contribution 0.933 -0.206 -0.420 1.044 sum -15.323 -0.530 7.963 17.277 Atomic orbital electron populations 1.21842 0.95544 1.01461 1.01519 1.21203 0.95327 0.96667 0.98842 1.21894 1.01642 0.95792 1.01396 1.21729 0.95065 1.00251 0.97588 1.20940 0.94501 0.99829 0.94297 0.90099 1.21937 1.03242 0.99611 0.96081 1.21820 0.93356 1.01774 1.00726 1.20582 0.90323 0.79126 0.80377 1.90617 1.65602 1.43086 1.43545 1.48335 1.08732 1.45574 1.31091 1.21726 0.94115 0.94882 0.90658 1.22000 1.00400 1.00960 0.93961 1.21625 0.89938 0.98566 1.04892 1.18876 0.95188 0.95715 0.88155 0.95375 1.21045 0.91888 1.46078 0.96308 0.92560 1.24933 0.97941 0.94888 0.96024 1.69864 1.34853 1.46136 1.01945 0.86640 0.85595 0.78594 0.77072 1.20262 1.21309 1.20224 1.21864 0.76664 1.00862 1.00984 0.92922 0.92875 0.92863 0.90955 0.92882 0.92122 0.92963 0.91862 0.92101 0.93291 0.93716 0.90498 0.89581 0.89136 0.92078 0.91157 0.92524 0.92419 0.94630 0.88662 0.92937 0.90375 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.10 -0.94 2.80 -90.62 -0.25 -1.20 16 3 C -0.15 -1.47 8.80 37.16 0.33 -1.14 16 4 C -0.11 -1.04 4.14 -26.73 -0.11 -1.15 16 5 C -0.08 -0.93 1.91 -90.62 -0.17 -1.10 16 6 H 0.08 1.13 6.25 -51.93 -0.32 0.80 16 7 C -0.15 -1.90 8.97 37.16 0.33 -1.56 16 8 C -0.14 -1.75 3.40 -27.88 -0.09 -1.85 16 9 C 0.51 8.99 7.38 -10.99 -0.08 8.91 16 10 O -0.55 -11.52 13.40 5.56 0.07 -11.44 16 11 N -0.61 -11.17 2.98 -173.05 -0.52 -11.68 16 12 C 0.11 1.68 6.34 -3.71 -0.02 1.66 16 13 C -0.13 -2.38 6.08 -26.61 -0.16 -2.54 16 14 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 15 C 0.04 0.98 2.24 -91.89 -0.21 0.78 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.51 -14.01 8.56 -34.44 -0.29 -14.31 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.00 11.31 55.43 0.63 -24.37 16 21 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 C 0.12 2.56 5.62 -3.95 -0.02 2.54 16 26 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.70 6.29 -51.93 -0.33 0.37 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.68 6.74 -51.93 -0.35 0.33 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 1.19 5.89 -51.93 -0.31 0.89 16 38 H 0.09 0.95 7.94 -51.93 -0.41 0.54 16 39 H 0.09 1.07 5.84 -51.93 -0.30 0.77 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.86 5.93 -51.92 -0.31 0.55 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 2.42 6.04 -51.92 -0.31 2.11 16 46 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.08 1.84 7.01 -51.93 -0.36 1.48 16 48 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -29.23 360.37 -8.94 -38.17 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.89 Total: 0.53 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.65 Total: -12.79 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.11 Total: -36.06 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.23 -8.94 -38.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.350 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds