Wall clock time and date at job start Tue Mar 31 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 N 1.46501 * 109.47377 * 295.00488 * 4 2 1 6 6 C 1.46501 * 120.00352 * 89.99957 * 5 4 2 7 7 C 1.34779 * 119.99631 * 269.99952 * 5 4 2 8 8 O 1.21277 * 120.00178 * 359.97438 * 7 5 4 9 9 C 1.50704 * 120.00012 * 180.02562 * 7 5 4 10 10 C 1.53001 * 109.47350 * 179.97438 * 9 7 5 11 11 C 1.50695 * 109.47046 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00449 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99963 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99718 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47177 * 90.00460 * 15 13 11 17 17 H 1.48503 * 109.47023 * 210.00135 * 15 13 11 18 18 H 1.48496 * 109.47134 * 329.99982 * 15 13 11 19 19 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 2 1 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 2 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 25 25 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 26 26 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 28 28 H 1.08997 * 109.46920 * 54.99996 * 4 2 1 29 29 H 1.08998 * 109.47295 * 175.00289 * 4 2 1 30 30 H 1.08991 * 109.47468 * 89.99828 * 6 5 4 31 31 H 1.09002 * 109.46646 * 210.00193 * 6 5 4 32 32 H 1.09002 * 109.46743 * 329.99445 * 6 5 4 33 33 H 1.09007 * 109.46841 * 299.99849 * 9 7 5 34 34 H 1.09000 * 109.47148 * 59.99169 * 9 7 5 35 35 H 1.08998 * 109.46538 * 299.99476 * 10 9 7 36 36 H 1.09002 * 109.46825 * 59.99984 * 10 9 7 37 37 H 0.97008 * 119.99985 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.46862 * 300.00565 * 19 2 1 39 39 H 1.09002 * 109.47153 * 59.99783 * 20 19 2 40 40 H 1.09001 * 109.46832 * 299.99974 * 20 19 2 41 41 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 43 43 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 44 44 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 47 47 H 1.09001 * 109.47375 * 59.99908 * 24 23 22 48 48 H 1.09000 * 109.47140 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 0.3745 -0.2423 3.1028 7 6 2.4714 0.9870 2.9325 8 8 3.5295 1.2166 2.3860 9 6 2.0730 1.7649 4.1602 10 6 3.1708 2.7739 4.5032 11 6 2.7721 3.5521 5.7305 12 1 1.8301 3.3474 6.2174 13 6 3.6104 4.5249 6.2324 14 7 4.7577 4.7739 5.6398 15 14 3.1164 5.4892 7.7542 16 1 3.6110 4.7885 8.9664 17 1 3.7092 6.8494 7.6923 18 1 1.6365 5.5964 7.8135 19 6 2.0400 -0.7212 -1.2492 20 6 3.5700 -0.7206 -1.2495 21 6 4.0800 -1.4413 -2.4990 22 6 3.5695 -0.7199 -3.7480 23 6 2.0395 -0.7206 -3.7477 24 6 1.5295 0.0002 -2.4982 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 0.5169 -1.0126 3.8606 31 1 0.0042 0.6678 3.5749 32 1 -0.3485 -0.5885 2.3642 33 1 1.1397 2.2943 3.9678 34 1 1.9360 1.0791 4.9962 35 1 4.1038 2.2441 4.6957 36 1 3.3081 3.4597 3.6672 37 1 5.3477 5.4581 5.9932 38 1 1.6766 -1.7488 -1.2492 39 1 3.9337 -1.2342 -0.3595 40 1 3.9329 0.3072 -1.2497 41 1 5.1700 -1.4413 -2.4990 42 1 3.7171 -2.4691 -2.4993 43 1 3.9324 0.3078 -3.7478 44 1 3.9333 -1.2331 -4.6382 45 1 1.6758 -0.2070 -4.6377 46 1 1.6766 -1.7484 -3.7479 47 1 1.8924 1.0280 -2.4980 48 1 0.4395 0.0001 -2.4982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600476334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:44 Heat of formation + Delta-G solvation = -81.144722 kcal Electronic energy + Delta-G solvation = -22881.260351 eV Core-core repulsion = 19741.333447 eV Total energy + Delta-G solvation = -3139.926903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.86422 -38.72518 -35.88684 -33.77162 -33.36872 -31.08807 -30.85483 -29.13910 -27.81369 -26.19037 -24.85882 -23.19790 -22.47359 -21.27098 -20.09104 -19.82428 -18.39581 -16.86539 -16.26260 -15.65771 -15.50549 -15.16136 -14.61837 -14.39634 -14.24270 -13.99745 -13.64927 -13.53043 -12.91498 -12.84221 -12.70885 -12.46173 -12.29727 -12.12667 -12.09369 -11.81024 -11.47847 -11.23184 -11.19078 -11.11005 -11.01623 -10.91021 -10.71140 -10.56292 -10.46911 -10.12188 -9.95595 -9.90934 -9.58363 -9.12645 -8.92148 -8.32508 -8.26036 -5.93823 -3.98045 3.29095 3.34515 3.38633 3.41359 3.44241 4.48673 4.52666 4.56163 4.64583 4.86389 5.00625 5.11652 5.16106 5.22462 5.25676 5.35989 5.40733 5.41007 5.42922 5.49194 5.54664 5.55740 5.57368 5.68004 5.77980 5.80006 5.86422 5.90926 5.95943 6.03338 6.08158 6.09960 6.11131 6.18782 6.26434 6.27666 6.30537 6.38019 6.50200 6.85634 6.95700 7.76941 7.81778 7.89996 8.10185 8.41677 8.82288 9.10681 9.65256 11.17136 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.003240 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.544110 B = 8640.635738 C = 9181.200992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 H 0.076 0.924 4 C 0.118 3.882 5 N -0.628 5.628 6 C 0.077 3.923 7 C 0.510 3.490 8 O -0.532 6.532 9 C -0.128 4.128 10 C 0.037 3.963 11 C -0.526 4.526 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.075 4.075 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 -14.714 -16.157 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 H 0.094 0.906 4 C -0.005 4.005 5 N -0.363 5.363 6 C -0.066 4.066 7 C 0.300 3.700 8 O -0.408 6.408 9 C -0.168 4.168 10 C 0.000 4.000 11 C -0.565 4.565 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.094 4.094 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.153 4.153 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.729 -14.466 -16.425 23.564 hybrid contribution -0.334 0.525 0.872 1.072 sum -9.062 -13.941 -15.553 22.768 Atomic orbital electron populations 1.21983 0.95471 1.01254 1.01936 1.21573 0.95730 1.00930 0.94121 0.90566 1.21492 1.01428 0.93697 0.83853 1.48032 1.20462 1.38846 1.28998 1.21854 0.85351 1.01938 0.97506 1.21553 0.83429 0.78927 0.86121 1.90652 1.23496 1.65786 1.60820 1.21877 1.02896 0.98938 0.93099 1.18894 0.92323 0.92411 0.96385 1.21227 1.04447 1.19164 1.11616 0.92668 1.25026 0.95013 0.97166 0.97192 1.70002 1.10118 1.32649 1.40066 0.86600 0.78630 0.79394 0.83375 1.20686 1.21233 1.19901 1.21101 0.95420 0.99148 0.93780 1.21665 0.94992 1.01448 0.97528 1.21530 1.00162 0.99137 0.94768 1.21542 0.95709 1.00875 0.97670 1.21523 0.95744 1.00510 0.97767 1.21635 1.00221 0.99553 0.93875 0.92645 0.93071 0.92191 0.91498 0.89744 0.93117 0.90651 0.91309 0.90422 0.90434 0.95899 0.95905 0.92981 0.91476 0.91574 0.91573 0.92166 0.92318 0.92004 0.92468 0.92368 0.92270 0.91954 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 7.83 37.16 0.29 -1.18 16 2 C -0.10 -1.22 2.18 -90.63 -0.20 -1.42 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.12 1.53 4.68 -4.04 -0.02 1.51 16 5 N -0.63 -9.34 2.70 -181.58 -0.49 -9.83 16 6 C 0.08 0.86 9.31 59.85 0.56 1.41 16 7 C 0.51 10.14 7.67 -10.98 -0.08 10.06 16 8 O -0.53 -12.73 15.56 5.56 0.09 -12.64 16 9 C -0.13 -2.68 4.19 -27.88 -0.12 -2.80 16 10 C 0.04 1.02 4.26 -27.89 -0.12 0.91 16 11 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 12 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 15 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 C -0.08 -0.76 1.78 -90.62 -0.16 -0.92 16 20 C -0.12 -1.31 4.86 -26.73 -0.13 -1.44 16 21 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 22 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 23 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 24 C -0.12 -1.07 4.85 -26.73 -0.13 -1.20 16 25 H 0.05 0.52 6.43 -51.93 -0.33 0.18 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.63 5.89 -51.93 -0.31 0.32 16 28 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 29 H 0.08 1.26 5.45 -51.93 -0.28 0.98 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 32 H 0.07 0.61 5.98 -51.93 -0.31 0.30 16 33 H 0.08 1.49 7.40 -51.93 -0.38 1.11 16 34 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.77 6.32 -51.93 -0.33 0.44 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -33.13 362.83 -9.12 -42.26 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -8.91 Total: -2.62 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -0.99 Total: -12.49 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.25 Total: -36.81 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.13 -9.12 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600476334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.887 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds