Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 C 1.53000 * 109.47489 * 119.99695 * 2 1 3 5 5 C 1.50701 * 109.47096 * 295.00102 * 4 2 1 6 6 H 1.08001 * 120.00030 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99748 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99944 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00288 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47525 * 89.99508 * 9 7 5 11 11 H 1.48501 * 109.47030 * 209.99896 * 9 7 5 12 12 H 1.48502 * 109.47104 * 329.98945 * 9 7 5 13 13 C 1.53001 * 109.47204 * 240.00321 * 2 1 3 14 14 N 1.46897 * 109.47314 * 64.59964 * 13 2 1 15 15 C 1.46846 * 110.99758 * 176.99902 * 14 13 2 16 16 C 1.53033 * 109.54695 * 174.16435 * 15 14 13 17 17 C 1.53102 * 109.28614 * 59.20669 * 16 15 14 18 18 C 1.53027 * 109.14784 * 302.45090 * 17 16 15 19 19 C 1.53076 * 109.55585 * 177.69727 * 18 17 16 20 20 C 1.53120 * 109.16885 * 176.78780 * 19 18 17 21 21 O 1.42898 * 109.40066 * 302.52181 * 20 19 18 22 22 C 1.42901 * 114.13512 * 61.18147 * 21 20 19 23 23 C 1.53088 * 109.52036 * 297.44031 * 18 17 16 24 24 C 1.46868 * 110.99908 * 52.81731 * 14 13 2 25 25 H 1.09000 * 109.47231 * 67.08627 * 1 2 3 26 26 H 1.09001 * 109.46841 * 187.08837 * 1 2 3 27 27 H 1.08997 * 109.46666 * 307.08167 * 1 2 3 28 28 H 1.09000 * 109.46768 * 54.99812 * 4 2 1 29 29 H 1.09002 * 109.47118 * 175.00051 * 4 2 1 30 30 H 0.97007 * 120.00252 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46546 * 304.60111 * 13 2 1 32 32 H 1.08994 * 109.47218 * 184.60721 * 13 2 1 33 33 H 1.08997 * 109.46113 * 294.18189 * 15 14 13 34 34 H 1.09002 * 109.45822 * 54.14718 * 15 14 13 35 35 H 1.08997 * 109.50939 * 179.12562 * 16 15 14 36 36 H 1.09002 * 109.50502 * 299.25466 * 16 15 14 37 37 H 1.09004 * 109.53330 * 182.55067 * 17 16 15 38 38 H 1.09001 * 109.58079 * 62.38707 * 17 16 15 39 39 H 1.09000 * 109.52247 * 296.69141 * 19 18 17 40 40 H 1.09000 * 109.52656 * 56.87897 * 19 18 17 41 41 H 1.09001 * 109.47884 * 182.54266 * 20 19 18 42 42 H 1.09003 * 109.48149 * 62.50494 * 20 19 18 43 43 H 1.08998 * 109.48340 * 178.82155 * 22 21 20 44 44 H 1.09007 * 109.48269 * 58.77518 * 22 21 20 45 45 H 1.09000 * 109.52636 * 303.07679 * 23 18 17 46 46 H 1.09002 * 109.51995 * 63.20881 * 23 18 17 47 47 H 1.09001 * 109.46133 * 305.73105 * 24 14 13 48 48 H 1.08999 * 109.45901 * 65.70690 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6415 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9926 -0.4021 3.7282 8 7 1.6451 0.2774 4.7993 9 14 2.9630 -1.9886 3.9028 10 1 4.4164 -1.6851 3.8790 11 1 2.6148 -2.6427 5.1897 12 1 2.6290 -2.8994 2.7785 13 6 2.0401 -0.7212 -1.2493 14 7 1.6432 0.0325 -2.4461 15 6 2.1770 -0.5929 -3.6628 16 6 1.6266 0.1303 -4.8940 17 6 2.0320 1.6055 -4.8372 18 6 1.5078 2.2205 -3.5377 19 6 1.9569 3.6809 -3.4442 20 6 1.3614 4.3102 -2.1817 21 8 -0.0625 4.1966 -2.2211 22 6 -0.5405 2.8505 -2.2592 23 6 -0.0220 2.1626 -3.5251 24 6 2.0592 1.4374 -2.3453 25 1 -0.3634 0.4001 -0.9466 26 1 -0.3633 -1.0198 0.1268 27 1 -0.3632 0.6196 0.8198 28 1 1.6055 -1.7197 1.2952 29 1 3.1264 -0.7993 1.2055 30 1 1.8924 -0.0455 5.6800 31 1 1.6109 -1.7223 -1.2914 32 1 3.1269 -0.7932 -1.2090 33 1 3.2649 -0.5256 -3.6584 34 1 1.8783 -1.6408 -3.6935 35 1 2.0353 -0.3245 -5.7963 36 1 0.5395 0.0517 -4.9065 37 1 1.6039 2.1342 -5.6890 38 1 3.1185 1.6872 -4.8666 39 1 3.0449 3.7249 -3.3946 40 1 1.6091 4.2259 -4.3217 41 1 1.6410 5.3627 -2.1336 42 1 1.7434 3.7918 -1.3022 43 1 -1.6304 2.8518 -2.2665 44 1 -0.1831 2.3128 -1.3808 45 1 -0.4132 2.6747 -4.4041 46 1 -0.3472 1.1223 -3.5346 47 1 1.6731 1.8650 -1.4200 48 1 3.1477 1.4947 -2.3454 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602472041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = -65.941492 kcal Electronic energy + Delta-G solvation = -24344.489362 eV Core-core repulsion = 21205.221721 eV Total energy + Delta-G solvation = -3139.267642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64743 -37.89736 -35.90439 -33.64058 -32.40703 -31.40533 -30.97039 -27.55296 -27.54347 -26.29541 -24.07453 -23.60944 -23.15789 -21.63106 -20.65710 -19.03266 -18.14321 -16.84128 -16.39422 -15.88224 -15.60555 -14.93665 -14.71073 -14.55294 -14.38627 -14.20135 -13.85286 -13.50864 -13.12826 -12.76728 -12.73542 -12.49879 -12.19001 -12.07374 -11.84163 -11.68990 -11.38821 -11.30210 -11.00262 -10.94099 -10.81562 -10.70378 -10.53073 -10.35750 -10.17638 -9.96921 -9.89370 -9.60547 -9.40763 -9.20691 -9.00338 -8.51436 -8.05116 -6.01757 -3.98768 3.30727 3.38579 3.42027 4.01113 4.05024 4.46737 4.53370 4.66270 4.72912 5.01788 5.09372 5.13546 5.22668 5.31569 5.34967 5.36513 5.44308 5.49219 5.58252 5.64020 5.71417 5.74028 5.78188 5.81873 5.84582 5.87521 5.92305 6.00396 6.02488 6.06201 6.11559 6.23645 6.31461 6.34775 6.37423 6.43080 6.57557 6.84553 7.01238 7.10533 7.24866 7.32533 7.34136 7.36399 7.48826 7.82842 8.57332 9.03823 9.61186 11.11642 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.005038 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.728209 B = 5556.189394 C = 6354.218769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.077 4.077 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.073 0.927 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.058 3.942 14 N -0.530 5.530 15 C 0.054 3.946 16 C -0.116 4.116 17 C -0.108 4.108 18 C -0.055 4.055 19 C -0.144 4.144 20 C 0.058 3.942 21 O -0.386 6.386 22 C 0.053 3.947 23 C -0.133 4.133 24 C 0.054 3.946 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.016 0.984 29 H 0.007 0.993 30 H 0.262 0.738 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 2.709 -20.581 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.091 0.909 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.069 4.069 14 N -0.254 5.254 15 C -0.074 4.074 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.055 4.055 19 C -0.182 4.182 20 C -0.019 4.019 21 O -0.305 6.305 22 C -0.024 4.024 23 C -0.170 4.170 24 C -0.073 4.073 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.473 2.837 -20.415 20.617 hybrid contribution 1.786 -1.128 0.321 2.136 sum 1.313 1.709 -20.094 20.209 Atomic orbital electron populations 1.21672 0.95237 1.01223 1.00348 1.21127 0.96397 0.99060 0.92965 0.92043 1.19625 0.95315 0.96250 0.93492 1.21111 1.35323 1.09491 0.89062 0.90872 1.25018 0.95693 0.96832 0.95973 1.69916 1.47201 1.39254 0.98003 0.86822 0.80587 0.84623 0.77487 1.20486 1.21466 1.19093 1.22323 0.97382 0.97641 0.89602 1.61940 1.59595 1.01765 1.02067 1.22061 0.96603 0.98401 0.90329 1.21595 1.01883 0.95079 0.96820 1.21602 1.00237 0.95857 0.96834 1.20540 0.95995 0.93818 0.95161 1.22217 1.00834 0.95644 0.99515 1.22582 0.81564 1.01055 0.96698 1.87883 1.20768 1.26919 1.94918 1.22765 0.99059 0.82686 0.97858 1.22115 0.94348 1.02314 0.98249 1.22339 0.97229 0.88993 0.98781 0.93297 0.93883 0.92516 0.96593 0.97502 0.92841 0.91091 0.95590 0.95452 0.91056 0.92027 0.90902 0.92056 0.92423 0.91212 0.91132 0.89272 0.92679 0.89395 0.91556 0.92262 0.89320 0.89101 0.95309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.57 37.16 0.32 -2.04 16 2 C -0.08 -1.47 1.92 -90.62 -0.17 -1.65 16 3 H 0.06 1.22 5.92 -51.93 -0.31 0.91 16 4 C -0.01 -0.21 3.51 -27.88 -0.10 -0.31 16 5 C -0.51 -14.36 9.05 -34.44 -0.31 -14.67 16 6 H 0.07 2.21 7.31 -52.49 -0.38 1.82 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.06 0.93 4.50 -3.83 -0.02 0.91 16 14 N -0.53 -7.19 3.32 -234.72 -0.78 -7.97 16 15 C 0.05 0.63 5.46 -3.84 -0.02 0.61 16 16 C -0.12 -1.13 5.74 -26.66 -0.15 -1.28 16 17 C -0.11 -1.06 4.79 -26.66 -0.13 -1.19 16 18 C -0.05 -0.61 0.51 -154.44 -0.08 -0.69 16 19 C -0.14 -1.53 4.92 -26.63 -0.13 -1.66 16 20 C 0.06 0.70 6.57 37.22 0.24 0.94 16 21 O -0.39 -5.44 10.76 -35.23 -0.38 -5.82 16 22 C 0.05 0.68 6.55 37.22 0.24 0.93 16 23 C -0.13 -1.52 4.43 -26.63 -0.12 -1.64 16 24 C 0.05 0.72 3.23 -3.87 -0.01 0.71 16 25 H 0.05 0.79 6.06 -51.93 -0.31 0.47 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.16 7.17 -51.93 -0.37 0.79 16 28 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 29 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.73 6.67 -51.93 -0.35 0.39 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.72 6.64 -51.93 -0.34 0.38 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.97 4.79 -51.92 -0.25 0.72 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.06 6.11 -51.93 -0.32 0.74 16 47 H 0.09 1.38 2.65 -51.93 -0.14 1.24 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -29.85 341.86 -9.06 -38.91 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.62 Total: -1.07 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.53 Total: -19.21 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.01 Total: -35.11 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.38 Total: -5.82 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.85 -9.06 -38.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602472041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.031 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds