Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46621 * 2 1 4 4 C 1.52998 * 109.47141 * 240.00241 * 2 1 3 5 5 C 1.50701 * 109.47161 * 64.99692 * 4 2 1 6 6 H 1.08000 * 119.99822 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99776 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00006 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00179 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46823 * 90.00384 * 9 7 5 11 11 H 1.48498 * 109.47074 * 210.00158 * 9 7 5 12 12 H 1.48502 * 109.46982 * 330.00117 * 9 7 5 13 13 C 1.52998 * 109.47059 * 119.99931 * 2 1 3 14 14 N 1.46900 * 109.46642 * 182.13700 * 13 2 1 15 15 C 1.46846 * 111.00298 * 52.11992 * 14 13 2 16 16 C 1.53039 * 109.54422 * 185.87040 * 15 14 13 17 17 C 1.53134 * 109.27179 * 300.77758 * 16 15 14 18 18 C 1.53020 * 109.16046 * 57.53290 * 17 16 15 19 19 C 1.53088 * 109.52936 * 62.60985 * 18 17 16 20 20 C 1.53110 * 109.15972 * 176.83947 * 19 18 17 21 21 O 1.42901 * 109.40071 * 302.50633 * 20 19 18 22 22 C 1.42908 * 114.13820 * 61.17472 * 21 20 19 23 23 C 1.53080 * 109.55683 * 182.35879 * 18 17 16 24 24 C 1.46870 * 110.99706 * 176.30369 * 14 13 2 25 25 H 1.09004 * 109.47565 * 54.57461 * 1 2 3 26 26 H 1.08999 * 109.47425 * 294.57304 * 1 2 3 27 27 H 1.09001 * 109.46866 * 174.57564 * 1 2 3 28 28 H 1.08999 * 109.46918 * 184.99570 * 4 2 1 29 29 H 1.09000 * 109.47065 * 304.99628 * 4 2 1 30 30 H 0.97001 * 120.00635 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47226 * 302.13303 * 13 2 1 32 32 H 1.08998 * 109.47216 * 62.13612 * 13 2 1 33 33 H 1.09006 * 109.45711 * 305.88747 * 15 14 13 34 34 H 1.08992 * 109.46229 * 65.84622 * 15 14 13 35 35 H 1.09009 * 109.50373 * 180.84300 * 16 15 14 36 36 H 1.09000 * 109.50924 * 60.72519 * 16 15 14 37 37 H 1.08997 * 109.52923 * 297.63239 * 17 16 15 38 38 H 1.09001 * 109.57765 * 177.46810 * 17 16 15 39 39 H 1.08994 * 109.52449 * 296.74827 * 19 18 17 40 40 H 1.09003 * 109.52307 * 56.93837 * 19 18 17 41 41 H 1.08993 * 109.48728 * 182.52622 * 20 19 18 42 42 H 1.08997 * 109.47920 * 62.48049 * 20 19 18 43 43 H 1.09000 * 109.48173 * 178.84247 * 22 21 20 44 44 H 1.09003 * 109.48292 * 58.80025 * 22 21 20 45 45 H 1.09000 * 109.52761 * 303.07961 * 23 18 17 46 46 H 1.09001 * 109.52483 * 63.21049 * 23 18 17 47 47 H 1.08996 * 109.45953 * 294.29579 * 24 14 13 48 48 H 1.09002 * 109.45925 * 54.27388 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0798 0.9742 -2.3756 7 6 1.9923 -0.4022 -3.7283 8 7 1.6439 0.2767 -4.7994 9 14 2.9627 -1.9888 -3.9029 10 1 2.0236 -3.1331 -4.0190 11 1 3.8108 -1.9190 -5.1198 12 1 3.8253 -2.1754 -2.7085 13 6 2.0400 -0.7212 1.2492 14 7 3.5081 -0.6766 1.2752 15 6 3.9958 0.6990 1.1132 16 6 5.5218 0.6909 0.9983 17 6 6.1204 0.0638 2.2607 18 6 5.5577 -1.3485 2.4351 19 6 5.9786 -2.2174 1.2471 20 6 5.4787 -3.6475 1.4684 21 8 6.0017 -4.1479 2.7005 22 6 5.6000 -3.4022 3.8516 23 6 6.1049 -1.9622 3.7263 24 6 4.0313 -1.2835 2.5061 25 1 -0.3634 0.5957 -0.8374 26 1 -0.3634 0.4273 0.9346 27 1 -0.3633 -1.0231 -0.0971 28 1 3.1263 -0.7993 -1.2056 29 1 1.6054 -1.7198 -1.2952 30 1 1.8911 -0.0461 -5.6801 31 1 1.6458 -0.2300 2.1388 32 1 1.7083 -1.7593 1.2303 33 1 3.5660 1.1326 0.2101 34 1 3.6998 1.2934 1.9774 35 1 5.8843 1.7136 0.8930 36 1 5.8182 0.1077 0.1265 37 1 5.8584 0.6698 3.1279 38 1 7.2051 0.0145 2.1649 39 1 5.5441 -1.8172 0.3311 40 1 7.0655 -2.2201 1.1648 41 1 5.8138 -4.2810 0.6472 42 1 4.3894 -3.6497 1.5083 43 1 6.0227 -3.8592 4.7464 44 1 4.5123 -3.4012 3.9227 45 1 7.1946 -1.9594 3.6978 46 1 5.7615 -1.3792 4.5809 47 1 3.7330 -0.6804 3.3636 48 1 3.6296 -2.2911 2.6133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602472042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -65.191902 kcal Electronic energy + Delta-G solvation = -24331.356625 eV Core-core repulsion = 21192.121488 eV Total energy + Delta-G solvation = -3139.235137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.58970 -38.03943 -35.86052 -33.37974 -32.20214 -31.64317 -31.04489 -27.69956 -27.50341 -26.08852 -23.91808 -23.52802 -23.08256 -21.88163 -20.77461 -18.61996 -18.27362 -16.76964 -16.37353 -15.98168 -15.64978 -14.90215 -14.72064 -14.64055 -14.24925 -14.23294 -13.71163 -13.32617 -13.22947 -12.80301 -12.56262 -12.43981 -12.28258 -12.00575 -11.73736 -11.54105 -11.48234 -11.31336 -11.02367 -10.94947 -10.80394 -10.74696 -10.45285 -10.37684 -10.19979 -9.95733 -9.66432 -9.58965 -9.36826 -9.30311 -8.92866 -8.44466 -7.91102 -5.95771 -3.91675 3.37522 3.45105 3.51956 3.88728 4.11669 4.53994 4.54292 4.70808 4.73379 5.00373 5.11946 5.18991 5.22278 5.32997 5.36966 5.39579 5.45675 5.53263 5.60021 5.62056 5.64270 5.73473 5.76146 5.82193 5.86416 5.92113 5.96386 6.00432 6.10930 6.13530 6.19280 6.24077 6.31309 6.32929 6.38653 6.50720 6.54726 6.83592 6.96997 7.09485 7.21737 7.42084 7.44076 7.52004 7.65843 7.92215 8.63794 9.10056 9.68521 11.17824 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.005596 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.835437 B = 5002.742946 C = 5498.619457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 H 0.064 0.936 4 C -0.001 4.001 5 C -0.513 4.513 6 H 0.069 0.931 7 C 0.065 3.935 8 N -0.909 5.909 9 Si 0.875 3.125 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.260 1.260 13 C 0.062 3.938 14 N -0.526 5.526 15 C 0.050 3.950 16 C -0.119 4.119 17 C -0.106 4.106 18 C -0.054 4.054 19 C -0.137 4.137 20 C 0.060 3.940 21 O -0.388 6.388 22 C 0.060 3.940 23 C -0.144 4.144 24 C 0.063 3.937 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.023 0.977 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.027 0.973 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.264 -3.588 18.075 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 H 0.082 0.918 4 C -0.038 4.038 5 C -0.551 4.551 6 H 0.087 0.913 7 C -0.135 4.135 8 N -0.549 5.549 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.184 1.184 13 C -0.065 4.065 14 N -0.250 5.250 15 C -0.078 4.078 16 C -0.156 4.156 17 C -0.144 4.144 18 C -0.054 4.054 19 C -0.175 4.175 20 C -0.017 4.017 21 O -0.307 6.307 22 C -0.016 4.016 23 C -0.182 4.182 24 C -0.065 4.065 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.045 0.955 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.562 -4.022 17.497 19.890 hybrid contribution -0.057 -0.059 0.426 0.433 sum 8.505 -4.081 17.923 20.254 Atomic orbital electron populations 1.21692 0.95912 1.01382 1.00067 1.21166 0.94899 0.99317 0.94537 0.91784 1.19539 0.97088 0.94967 0.92229 1.21223 1.34949 1.09442 0.89459 0.91273 1.25002 0.95687 0.96867 0.95953 1.69922 1.47536 1.39447 0.97967 0.86834 0.80799 0.84356 0.77716 1.20674 1.21794 1.18431 1.22261 0.86021 1.00737 0.97477 1.61853 1.09077 1.19026 1.35003 1.22211 0.95092 0.88988 1.01471 1.21627 0.95179 1.00522 0.98310 1.21604 0.99698 0.94860 0.98241 1.20521 0.94698 0.95407 0.94823 1.22157 1.00700 0.94965 0.99667 1.22638 0.98253 0.94881 0.85899 1.87891 1.73898 1.53994 1.14890 1.22546 0.98813 0.91432 0.88848 1.22218 1.01547 0.96685 0.97752 1.22166 0.94048 0.99360 0.90934 0.91536 0.95120 0.93532 0.95038 0.97644 0.92995 0.96293 0.91423 0.88690 0.95886 0.91795 0.90621 0.92551 0.92087 0.88668 0.92005 0.89171 0.92603 0.89406 0.93255 0.91004 0.91278 0.95516 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.91 37.16 0.33 -2.09 16 2 C -0.08 -1.54 1.85 -90.62 -0.17 -1.70 16 3 H 0.06 1.26 6.06 -51.93 -0.31 0.94 16 4 C 0.00 -0.02 3.38 -27.88 -0.09 -0.11 16 5 C -0.51 -14.29 9.03 -34.44 -0.31 -14.60 16 6 H 0.07 2.07 7.30 -52.49 -0.38 1.69 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.13 13.96 55.43 0.77 -27.36 16 9 Si 0.88 21.97 27.47 -169.99 -4.67 17.31 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.06 1.00 4.54 -3.83 -0.02 0.98 16 14 N -0.53 -7.99 3.25 -234.71 -0.76 -8.75 16 15 C 0.05 0.74 5.02 -3.83 -0.02 0.72 16 16 C -0.12 -1.55 5.75 -26.64 -0.15 -1.70 16 17 C -0.11 -1.20 4.79 -26.65 -0.13 -1.32 16 18 C -0.05 -0.63 0.51 -154.44 -0.08 -0.70 16 19 C -0.14 -1.77 4.43 -26.63 -0.12 -1.89 16 20 C 0.06 0.77 6.57 37.21 0.24 1.01 16 21 O -0.39 -5.02 10.76 -35.23 -0.38 -5.40 16 22 C 0.06 0.62 6.57 37.22 0.24 0.87 16 23 C -0.14 -1.42 4.92 -26.63 -0.13 -1.55 16 24 C 0.06 0.80 3.63 -3.87 -0.01 0.79 16 25 H 0.07 1.35 7.12 -51.93 -0.37 0.98 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.75 6.56 -51.93 -0.34 0.41 16 29 H 0.01 0.13 7.57 -51.93 -0.39 -0.27 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.63 5.74 -51.93 -0.30 1.34 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.08 1.09 6.67 -51.93 -0.35 0.75 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.44 6.12 -51.93 -0.32 1.12 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.75 6.59 -51.93 -0.34 0.41 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.50 6.63 -51.93 -0.34 0.15 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.91 5.00 -51.93 -0.26 0.65 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -30.01 345.23 -9.14 -39.15 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.80 Total: -0.64 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -0.51 Total: -19.51 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.01 Total: -36.11 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.38 Total: -5.40 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.01 -9.14 -39.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602472042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.038 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds