Wall clock time and date at job start Tue Mar 31 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47009 * 2 1 4 4 C 1.53008 * 109.47256 * 119.99221 * 2 1 3 5 5 C 1.50700 * 109.47168 * 295.00492 * 4 2 1 6 6 H 1.08004 * 119.99903 * 359.97438 * 5 4 2 7 7 C 1.37870 * 119.99605 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00484 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99881 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46973 * 90.00194 * 9 7 5 11 11 H 1.48494 * 109.47102 * 210.00322 * 9 7 5 12 12 H 1.48501 * 109.46752 * 329.99934 * 9 7 5 13 13 C 1.52998 * 109.47481 * 239.99622 * 2 1 3 14 14 N 1.46897 * 109.47037 * 62.41916 * 13 2 1 15 15 C 1.47017 * 111.00264 * 176.10068 * 14 13 2 16 16 C 1.53090 * 109.28887 * 177.62797 * 15 14 13 17 17 O 1.43028 * 109.26031 * 56.83232 * 16 15 14 18 18 C 1.42978 * 113.71410 * 301.37733 * 17 16 15 19 19 C 1.52977 * 109.47735 * 298.75898 * 18 17 16 20 20 C 1.53007 * 109.47326 * 299.85881 * 19 18 17 21 21 C 1.52999 * 109.45849 * 300.02854 * 20 19 18 22 22 C 1.52998 * 109.47646 * 60.02486 * 21 20 19 23 23 C 1.52955 * 109.50655 * 178.65530 * 18 17 16 24 24 C 1.47033 * 110.99948 * 52.47896 * 14 13 2 25 25 H 1.09001 * 109.46447 * 185.03667 * 1 2 3 26 26 H 1.08999 * 109.47135 * 305.03252 * 1 2 3 27 27 H 1.09000 * 109.46992 * 65.03678 * 1 2 3 28 28 H 1.09002 * 109.46533 * 55.00228 * 4 2 1 29 29 H 1.08997 * 109.47033 * 175.00361 * 4 2 1 30 30 H 0.97005 * 120.00652 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47215 * 182.41786 * 13 2 1 32 32 H 1.08999 * 109.47210 * 302.42204 * 13 2 1 33 33 H 1.09004 * 109.49754 * 297.57172 * 15 14 13 34 34 H 1.08993 * 109.50221 * 57.67732 * 15 14 13 35 35 H 1.09001 * 109.50768 * 176.77132 * 16 15 14 36 36 H 1.09002 * 109.50275 * 296.89801 * 16 15 14 37 37 H 1.08993 * 109.46894 * 59.86307 * 19 18 17 38 38 H 1.09003 * 109.47244 * 179.86103 * 19 18 17 39 39 H 1.09000 * 109.47352 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47230 * 60.02733 * 20 19 18 41 41 H 1.08994 * 109.47268 * 300.02451 * 21 20 19 42 42 H 1.08998 * 109.46649 * 180.02562 * 21 20 19 43 43 H 1.09003 * 109.47329 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.47411 * 59.99158 * 22 21 20 45 45 H 1.09006 * 109.47297 * 180.14688 * 23 18 17 46 46 H 1.09004 * 109.46703 * 300.14019 * 23 18 17 47 47 H 1.08993 * 109.51037 * 302.28651 * 24 14 13 48 48 H 1.09005 * 109.50622 * 62.43321 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 1.6413 0.0573 2.4767 6 1 1.0805 0.9748 2.3756 7 6 1.9924 -0.4019 3.7283 8 7 2.6756 -1.5188 3.8513 9 14 1.4975 0.5626 5.2498 10 1 0.1701 0.0940 5.7228 11 1 2.5064 0.3525 6.3189 12 1 1.4226 2.0078 4.9169 13 6 2.0401 -0.7213 -1.2492 14 7 1.5988 0.0040 -2.4479 15 6 2.1481 -0.6083 -3.6664 16 6 1.6174 0.1400 -4.8919 17 8 1.9562 1.5252 -4.7821 18 6 1.4368 2.1529 -3.6071 19 6 -0.0913 2.0839 -3.6251 20 6 -0.6202 2.8100 -4.8637 21 6 -0.1754 4.2734 -4.8253 22 6 1.3529 4.3418 -4.8083 23 6 1.8823 3.6156 -3.5700 24 6 1.9658 1.4256 -2.3686 25 1 -0.3632 -1.0237 0.0902 26 1 -0.3633 0.5899 0.8415 27 1 -0.3633 0.4337 -0.9317 28 1 1.6054 -1.7197 1.2953 29 1 3.1264 -0.7993 1.2057 30 1 2.9229 -1.8418 4.7320 31 1 3.1292 -0.7590 -1.2277 32 1 1.6418 -1.7357 -1.2711 33 1 3.2362 -0.5471 -3.6456 34 1 1.8430 -1.6534 -3.7177 35 1 2.0670 -0.2743 -5.7943 36 1 0.5338 0.0332 -4.9424 37 1 -0.4076 1.0412 -3.6524 38 1 -0.4871 2.5602 -2.7281 39 1 -1.7090 2.7612 -4.8763 40 1 -0.2248 2.3334 -5.7607 41 1 -0.5704 4.7498 -3.9280 42 1 -0.5525 4.7909 -5.7074 43 1 1.6697 5.3844 -4.7814 44 1 1.7480 3.8654 -5.7055 45 1 1.4882 4.0929 -2.6727 46 1 2.9712 3.6635 -3.5586 47 1 1.5271 1.8654 -1.4730 48 1 3.0510 1.5195 -2.3271 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:39 Heat of formation + Delta-G solvation = -71.889639 kcal Electronic energy + Delta-G solvation = -23894.000135 eV Core-core repulsion = 20754.474563 eV Total energy + Delta-G solvation = -3139.525573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51724 -37.38097 -35.99236 -33.91196 -31.97882 -31.69712 -30.73646 -28.50797 -26.78820 -26.21571 -24.43906 -23.17304 -22.63078 -21.90440 -20.27138 -19.23990 -18.73660 -16.65557 -16.10509 -15.92628 -15.41856 -15.04245 -14.69186 -14.54153 -14.31690 -13.97094 -13.66906 -13.52274 -13.30600 -12.57200 -12.37218 -12.23865 -12.14123 -12.03068 -11.77937 -11.58134 -11.37243 -11.26994 -11.05366 -10.93099 -10.84171 -10.75988 -10.56031 -10.39531 -10.31191 -10.19946 -9.84225 -9.60037 -9.36600 -9.15221 -8.91909 -8.33271 -8.04056 -5.98073 -3.99376 3.32478 3.38858 3.41798 3.76757 4.06192 4.47584 4.67582 4.73876 4.76479 5.03751 5.06535 5.16010 5.19460 5.32734 5.37378 5.37934 5.47583 5.51661 5.60423 5.63209 5.67625 5.74242 5.80098 5.81941 5.91956 5.96835 6.00009 6.07372 6.12651 6.13990 6.16960 6.22142 6.39439 6.41842 6.42461 6.51131 6.64600 6.99113 7.09570 7.16966 7.26683 7.34961 7.38355 7.68203 7.83960 8.01739 8.45630 9.06866 9.64164 11.13470 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.004074 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.658072 B = 6870.569044 C = 7500.191225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.529 5.529 15 C 0.016 3.984 16 C 0.063 3.937 17 O -0.374 6.374 18 C 0.126 3.874 19 C -0.134 4.134 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.105 4.105 24 C 0.027 3.973 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 7.481 -19.239 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.254 5.254 15 C -0.112 4.112 16 C -0.014 4.014 17 O -0.293 6.293 18 C 0.086 3.914 19 C -0.172 4.172 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.143 4.143 24 C -0.102 4.102 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.113 0.887 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.116 7.425 -19.265 21.053 hybrid contribution 0.632 0.149 1.293 1.447 sum -3.484 7.574 -17.972 19.812 Atomic orbital electron populations 1.21598 0.95642 1.00933 0.99881 1.21304 0.96050 0.99043 0.94008 0.92533 1.19123 0.95887 0.95561 0.90396 1.21215 1.34606 1.08258 0.90966 0.92631 1.25010 0.95303 0.95089 0.99074 1.69963 1.39056 1.21280 1.23367 0.86642 0.78243 0.80430 0.82982 1.20701 1.21311 1.19919 1.22331 0.97234 0.97901 0.89206 1.62299 1.58910 1.01906 1.02236 1.22758 0.97751 0.99372 0.91357 1.22607 1.00045 0.81741 0.96979 1.87961 1.75989 1.22491 1.42900 1.21480 0.93134 0.92240 0.84542 1.21985 0.94865 1.01956 0.98345 1.21477 0.99666 0.95473 0.98726 1.21532 0.95938 0.96765 1.01385 1.21430 0.95501 0.99526 0.98620 1.21510 1.01174 0.92645 0.98984 1.22833 0.98721 0.89593 0.99010 0.93947 0.92993 0.93810 0.96555 0.96994 0.93093 0.95405 0.91033 0.94462 0.90069 0.89157 0.92271 0.90279 0.91190 0.92456 0.91824 0.92199 0.92453 0.92359 0.91319 0.90493 0.91451 0.88692 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.79 37.16 0.33 -2.02 16 2 C -0.09 -1.73 1.86 -90.62 -0.17 -1.90 16 3 H 0.06 1.16 6.12 -51.93 -0.32 0.84 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.30 8.47 -34.44 -0.29 -14.59 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.05 4.55 -3.83 -0.02 1.03 16 14 N -0.53 -7.84 3.45 -234.32 -0.81 -8.65 16 15 C 0.02 0.21 5.66 -3.71 -0.02 0.19 16 16 C 0.06 0.72 6.61 37.20 0.25 0.96 16 17 O -0.37 -4.81 8.95 -35.23 -0.32 -5.12 16 18 C 0.13 1.56 0.68 -90.62 -0.06 1.49 16 19 C -0.13 -1.57 4.26 -26.74 -0.11 -1.68 16 20 C -0.12 -1.18 5.78 -26.73 -0.15 -1.33 16 21 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 22 C -0.11 -1.12 5.78 -26.73 -0.15 -1.27 16 23 C -0.11 -1.17 4.95 -26.75 -0.13 -1.31 16 24 C 0.03 0.39 3.84 -3.72 -0.01 0.37 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 1.05 7.10 -51.93 -0.37 0.68 16 27 H 0.04 0.74 7.53 -51.93 -0.39 0.35 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.66 6.49 -51.93 -0.34 0.32 16 37 H 0.08 1.01 6.11 -51.93 -0.32 0.69 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.68 7.69 -51.93 -0.40 0.28 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 1.47 5.96 -51.93 -0.31 1.16 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -29.42 353.94 -10.12 -39.54 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -9.11 Total: -2.26 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -0.94 Total: -19.23 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.07 Total: -34.93 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.32 Total: -5.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.42 -10.12 -39.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.348 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds