Wall clock time and date at job start Tue Mar 31 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47132 * 2 1 4 4 C 1.53004 * 109.46927 * 240.00139 * 2 1 3 5 5 C 1.50701 * 109.46704 * 64.99719 * 4 2 1 6 6 H 1.08001 * 120.00273 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99704 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00085 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47140 * 89.99694 * 9 7 5 11 11 H 1.48495 * 109.47461 * 210.00173 * 9 7 5 12 12 H 1.48504 * 109.47070 * 329.99858 * 9 7 5 13 13 C 1.53000 * 109.47338 * 120.00514 * 2 1 3 14 14 N 1.46897 * 109.46979 * 297.08706 * 13 2 1 15 15 C 1.47020 * 111.00020 * 294.01301 * 14 13 2 16 16 C 1.53083 * 109.28689 * 177.62185 * 15 14 13 17 17 O 1.43029 * 109.25809 * 56.83948 * 16 15 14 18 18 C 1.42977 * 113.71439 * 301.37107 * 17 16 15 19 19 C 1.52973 * 109.47889 * 298.76180 * 18 17 16 20 20 C 1.53007 * 109.47216 * 299.85451 * 19 18 17 21 21 C 1.52999 * 109.46047 * 300.02997 * 20 19 18 22 22 C 1.52998 * 109.47797 * 60.02304 * 21 20 19 23 23 C 1.52953 * 109.51003 * 178.65308 * 18 17 16 24 24 C 1.47026 * 111.00098 * 170.39409 * 14 13 2 25 25 H 1.09005 * 109.46958 * 174.72910 * 1 2 3 26 26 H 1.08998 * 109.46471 * 294.72121 * 1 2 3 27 27 H 1.08994 * 109.47276 * 54.72712 * 1 2 3 28 28 H 1.08998 * 109.47376 * 184.99617 * 4 2 1 29 29 H 1.09004 * 109.47156 * 305.00320 * 4 2 1 30 30 H 0.97006 * 119.99851 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.47198 * 57.08464 * 13 2 1 32 32 H 1.08995 * 109.47222 * 177.08337 * 13 2 1 33 33 H 1.08996 * 109.50210 * 297.57547 * 15 14 13 34 34 H 1.09009 * 109.50043 * 57.64306 * 15 14 13 35 35 H 1.09001 * 109.50707 * 176.76890 * 16 15 14 36 36 H 1.08997 * 109.51443 * 296.89967 * 16 15 14 37 37 H 1.09000 * 109.47015 * 59.85523 * 19 18 17 38 38 H 1.09002 * 109.47296 * 179.85326 * 19 18 17 39 39 H 1.08996 * 109.47055 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47074 * 60.02948 * 20 19 18 41 41 H 1.08997 * 109.47138 * 300.02096 * 21 20 19 42 42 H 1.09000 * 109.46805 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.47071 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.47407 * 59.98983 * 22 21 20 45 45 H 1.09009 * 109.47319 * 180.14845 * 23 18 17 46 46 H 1.09008 * 109.47146 * 300.13953 * 23 18 17 47 47 H 1.09003 * 109.51190 * 302.28714 * 24 14 13 48 48 H 1.09007 * 109.50936 * 62.43010 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9931 -0.4016 -3.7283 8 7 2.6762 -1.5186 -3.8513 9 14 1.4994 0.5635 -5.2496 10 1 2.5649 1.5432 -5.5817 11 1 1.3127 -0.3700 -6.3892 12 1 0.2281 1.2848 -4.9873 13 6 2.0401 -0.7214 1.2492 14 7 1.6088 0.0105 2.4476 15 6 2.2510 1.3311 2.5181 16 6 1.7302 2.0817 3.7464 17 8 1.9750 1.2976 4.9173 18 6 1.3637 0.0055 4.8822 19 6 -0.1545 0.1621 4.7790 20 6 -0.6714 0.9346 5.9944 21 6 -0.3226 0.1679 7.2717 22 6 1.1959 0.0124 7.3749 23 6 1.7133 -0.7598 6.1595 24 6 1.8808 -0.7664 3.6658 25 1 -0.3633 -1.0234 -0.0944 26 1 -0.3632 0.4298 0.9335 27 1 -0.3633 0.5934 -0.8389 28 1 3.1263 -0.7994 -1.2058 29 1 1.6053 -1.7198 -1.2953 30 1 2.9241 -1.8411 -4.7320 31 1 1.6347 -1.7329 1.2756 32 1 3.1288 -0.7668 1.2234 33 1 3.3308 1.2068 2.5983 34 1 2.0159 1.8986 1.6175 35 1 2.2460 3.0379 3.8345 36 1 0.6590 2.2537 3.6410 37 1 -0.4024 0.7084 3.8690 38 1 -0.6202 -0.8230 4.7497 39 1 -1.7531 1.0458 5.9211 40 1 -0.2061 1.9199 6.0234 41 1 -0.7876 -0.8174 7.2424 42 1 -0.6912 0.7179 8.1376 43 1 1.4442 -0.5334 8.2851 44 1 1.6610 0.9978 7.4041 45 1 1.2491 -1.7457 6.1310 46 1 2.7954 -0.8698 6.2326 47 1 1.3746 -1.7298 3.6038 48 1 2.9548 -0.9244 3.7646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:42 Heat of formation + Delta-G solvation = -73.644109 kcal Electronic energy + Delta-G solvation = -23634.584256 eV Core-core repulsion = 20494.982604 eV Total energy + Delta-G solvation = -3139.601652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52152 -37.42212 -35.89280 -33.99175 -32.06929 -31.63197 -30.75987 -28.59939 -26.93755 -26.00491 -24.26001 -23.36144 -22.73804 -21.91193 -20.25288 -19.23657 -18.81894 -16.61653 -16.11528 -15.90399 -15.41281 -15.08319 -14.82670 -14.55080 -14.31674 -14.04198 -13.62485 -13.49575 -13.31678 -12.73144 -12.27974 -12.27622 -12.17698 -12.14319 -11.79581 -11.58412 -11.36082 -11.24142 -11.10821 -10.90394 -10.87412 -10.72629 -10.60505 -10.40165 -10.31274 -10.26603 -9.91959 -9.59575 -9.42470 -9.11771 -8.90991 -8.32760 -8.04496 -5.97629 -3.98761 3.32721 3.39137 3.42393 3.74173 4.03889 4.48265 4.60679 4.67470 4.70693 4.98313 5.07107 5.12566 5.19820 5.31646 5.33658 5.38375 5.42388 5.45353 5.55447 5.60234 5.64009 5.69178 5.72736 5.83689 5.87806 5.94040 5.99003 6.04645 6.07708 6.10433 6.16027 6.16785 6.34834 6.36716 6.41287 6.52844 6.68564 7.00494 7.11093 7.18846 7.25614 7.34612 7.38760 7.69181 7.85207 8.02497 8.46587 9.07612 9.64652 11.13922 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038651 B = 0.003369 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.266014 B = 8308.968303 C = 8410.381736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.528 5.528 15 C 0.016 3.984 16 C 0.062 3.938 17 O -0.374 6.374 18 C 0.125 3.875 19 C -0.134 4.134 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.104 4.104 24 C 0.029 3.971 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.011 0.989 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 3.436 21.728 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 N -0.253 5.253 15 C -0.113 4.113 16 C -0.014 4.014 17 O -0.293 6.293 18 C 0.086 3.914 19 C -0.172 4.172 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.099 4.099 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.221 3.446 21.715 22.388 hybrid contribution 0.636 0.152 -1.289 1.445 sum -3.585 3.599 20.427 21.049 Atomic orbital electron populations 1.21566 0.95711 1.00728 0.99859 1.21216 0.95982 0.98965 0.93734 0.92702 1.19128 0.95868 0.95554 0.90461 1.21228 1.34578 1.08243 0.90970 0.92608 1.25022 0.95355 0.95083 0.99095 1.69967 1.39127 1.21228 1.23367 0.86633 0.78924 0.79815 0.82869 1.20771 1.21304 1.19876 1.22332 0.97340 0.97560 0.89414 1.62270 1.58074 1.02962 1.01963 1.22810 0.96862 0.91944 0.99654 1.22654 1.00708 0.93759 0.84323 1.87961 1.74542 1.27106 1.39706 1.21436 0.92426 0.83668 0.93887 1.21985 0.94832 1.01423 0.98957 1.21478 1.00000 0.99539 0.94383 1.21529 0.96080 1.00256 0.97699 1.21434 0.95722 1.01067 0.96917 1.21501 1.01400 0.98152 0.93131 1.22738 0.99113 0.97556 0.90501 0.94129 0.93822 0.93065 0.97022 0.96595 0.93106 0.91231 0.95332 0.94454 0.89016 0.88999 0.92189 0.90067 0.91444 0.92402 0.91689 0.92319 0.92403 0.92383 0.91204 0.90730 0.91497 0.90110 0.94499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.85 37.16 0.33 -2.01 16 2 C -0.08 -1.63 2.23 -90.61 -0.20 -1.83 16 3 H 0.05 1.13 6.37 -51.93 -0.33 0.80 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.34 8.47 -34.44 -0.29 -14.63 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.06 1.06 4.37 -3.83 -0.02 1.04 16 14 N -0.53 -7.80 3.37 -234.32 -0.79 -8.59 16 15 C 0.02 0.22 5.43 -3.72 -0.02 0.20 16 16 C 0.06 0.75 6.61 37.20 0.25 0.99 16 17 O -0.37 -4.75 8.95 -35.23 -0.32 -5.06 16 18 C 0.13 1.45 0.68 -90.62 -0.06 1.39 16 19 C -0.13 -1.48 4.26 -26.74 -0.11 -1.60 16 20 C -0.12 -1.13 5.78 -26.73 -0.15 -1.28 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 22 C -0.11 -1.03 5.78 -26.73 -0.15 -1.18 16 23 C -0.10 -1.02 4.95 -26.75 -0.13 -1.16 16 24 C 0.03 0.38 4.34 -3.72 -0.02 0.37 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.75 7.54 -51.93 -0.39 0.36 16 27 H 0.05 1.05 7.11 -51.93 -0.37 0.68 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 1.21 8.05 -51.93 -0.42 0.80 16 32 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.34 6.31 -51.92 -0.33 1.01 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.71 6.49 -51.93 -0.34 0.37 16 37 H 0.08 1.02 6.11 -51.93 -0.32 0.70 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.68 7.69 -51.93 -0.40 0.28 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 45 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 46 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 47 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 48 H 0.04 0.51 8.14 -51.92 -0.42 0.08 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -29.48 354.84 -10.14 -39.63 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -9.13 Total: -2.91 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.97 Total: -18.81 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.05 Total: -34.91 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.32 Total: -5.06 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.48 -10.14 -39.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.016 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds